Wall clock time and date at job start Tue Mar 31 2020 07:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.46878 * 2 1 4 4 C 1.53005 * 109.46951 * 240.00831 * 2 1 3 5 5 C 1.52997 * 109.47037 * 174.99847 * 4 2 1 6 6 C 1.50708 * 109.46941 * 179.97438 * 5 4 2 7 7 H 1.07999 * 119.99575 * 0.02562 * 6 5 4 8 8 C 1.37877 * 119.99866 * 179.97438 * 6 5 4 9 9 N 1.31510 * 119.99960 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 119.99946 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.46994 * 90.00141 * 10 8 6 12 12 H 1.48496 * 109.47405 * 210.00686 * 10 8 6 13 13 H 1.48504 * 109.47220 * 330.00671 * 10 8 6 14 14 N 1.46887 * 109.47391 * 120.00673 * 2 1 3 15 15 C 1.46908 * 110.99897 * 274.43549 * 14 2 1 16 16 H 1.08996 * 109.68186 * 341.50591 * 15 14 2 17 17 C 1.53330 * 109.68515 * 220.93335 * 15 14 2 18 18 C 1.52711 * 108.42291 * 170.47890 * 17 15 14 19 19 C 1.50736 * 110.58686 * 51.30340 * 18 17 15 20 20 N 1.32795 * 117.48886 * 162.38979 * 19 18 17 21 21 C 1.31900 * 122.34927 * 179.32486 * 20 19 18 22 22 O 1.35677 * 119.76733 * 180.02562 * 21 20 19 23 23 C 1.38929 * 120.46106 * 0.03442 * 21 20 19 24 24 C 1.38140 * 118.79317 * 0.13344 * 23 21 20 25 25 C 1.37487 * 122.34881 * 341.99223 * 19 18 17 26 26 C 1.50510 * 122.83497 * 0.82072 * 25 19 18 27 27 H 1.09006 * 109.46876 * 305.55047 * 1 2 3 28 28 H 1.08999 * 109.47005 * 185.55385 * 1 2 3 29 29 H 1.09001 * 109.47454 * 65.54597 * 1 2 3 30 30 H 1.09006 * 109.46574 * 295.00126 * 4 2 1 31 31 H 1.08998 * 109.47168 * 54.99764 * 4 2 1 32 32 H 1.08997 * 109.47117 * 299.99574 * 5 4 2 33 33 H 1.08998 * 109.47210 * 59.99943 * 5 4 2 34 34 H 0.97000 * 119.99639 * 179.97438 * 9 8 6 35 35 H 1.00898 * 111.00332 * 38.38756 * 14 2 1 36 36 H 1.08998 * 109.67715 * 290.21323 * 17 15 14 37 37 H 1.09002 * 109.67542 * 50.74673 * 17 15 14 38 38 H 1.09000 * 109.25778 * 291.01232 * 18 17 15 39 39 H 1.09002 * 109.22094 * 171.56146 * 18 17 15 40 40 H 0.96698 * 113.99925 * 269.97770 * 22 21 20 41 41 H 1.08004 * 120.60465 * 180.15222 * 23 21 20 42 42 H 1.08001 * 120.52397 * 179.97438 * 24 23 21 43 43 H 1.08996 * 109.26137 * 222.05554 * 26 25 19 44 44 H 1.09008 * 109.22565 * 102.60002 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 3.5648 -0.6131 -1.3139 6 6 4.0671 -1.3239 -2.5442 7 1 3.3686 -1.8042 -3.2133 8 6 5.4183 -1.3601 -2.8160 9 7 6.2688 -0.7748 -2.0014 10 14 6.0409 -2.2405 -4.3413 11 1 6.0904 -1.2863 -5.4781 12 1 7.4024 -2.7746 -4.0836 13 1 5.1248 -3.3607 -4.6749 14 7 2.0197 -0.6926 1.1992 15 6 2.0952 0.2257 2.3435 16 1 2.0917 1.2561 1.9882 17 6 3.3788 -0.0434 3.1378 18 6 3.5501 1.0693 4.1696 19 6 2.2882 1.2437 4.9754 20 7 2.3812 1.9017 6.1252 21 6 1.3361 2.1208 6.8995 22 8 1.4910 2.7999 8.0638 23 6 0.0780 1.6608 6.5313 24 6 -0.0561 0.9690 5.3431 25 6 1.0732 0.7570 4.5544 26 6 0.9007 -0.0042 3.2675 27 1 -0.3633 0.5975 0.8362 28 1 -0.3633 -1.0228 0.0995 29 1 -0.3634 0.4254 -0.9355 30 1 1.7515 -1.7714 -1.2058 31 1 1.6053 -0.2615 -2.1370 32 1 3.8531 0.4371 -1.3575 33 1 3.9994 -1.0727 -0.4262 34 1 7.2195 -0.8006 -2.1924 35 1 1.4442 -1.4927 1.4151 36 1 3.3018 -1.0053 3.6448 37 1 4.2338 -0.0518 2.4618 38 1 3.7808 2.0029 3.6565 39 1 4.3717 0.8146 4.8391 40 1 1.6896 2.2366 8.8243 41 1 -0.7798 1.8410 7.1624 42 1 -1.0210 0.5985 5.0300 43 1 -0.0087 0.3324 2.7698 44 1 0.8166 -1.0684 3.4885 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172479659.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:53:55 Heat of formation + Delta-G solvation = -28.785696 kcal Electronic energy + Delta-G solvation = -22878.969217 eV Core-core repulsion = 19602.283677 eV Total energy + Delta-G solvation = -3276.685540 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 4.20 seconds Orbital eigenvalues (eV) -40.99428 -38.59414 -37.17421 -35.08006 -33.55656 -32.90312 -30.99461 -30.09166 -29.09053 -27.34422 -24.98858 -24.11849 -22.79494 -22.73215 -21.32118 -20.37611 -19.51733 -18.59336 -17.14806 -16.15984 -16.09310 -15.87797 -15.13454 -14.81264 -14.39059 -14.26331 -14.15512 -13.91261 -13.37784 -13.12309 -12.94394 -12.66078 -12.43315 -12.37371 -12.17006 -11.98443 -11.67144 -11.51852 -11.20096 -11.15136 -10.96408 -10.80564 -10.65870 -10.41444 -10.08972 -9.85582 -9.61511 -9.54209 -9.18697 -8.87483 -8.77948 -8.22029 -7.91470 -5.87038 -3.87888 0.78925 0.98190 3.21137 3.37983 3.44255 3.47440 3.54597 4.26253 4.34244 4.55362 4.59534 4.63652 4.71361 4.91011 5.04154 5.12914 5.34172 5.38042 5.42587 5.46628 5.47755 5.48565 5.57639 5.63447 5.72712 5.82849 5.87574 5.92194 6.08886 6.18152 6.25065 6.29403 6.34126 6.41275 6.53666 6.69635 6.90270 7.23407 7.32521 7.51778 7.76573 7.80511 7.86723 8.09955 8.24998 8.59475 9.21103 9.74615 11.23954 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.028307 B = 0.003039 C = 0.002793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.900192 B = 9212.187945 C =10021.090988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.083 3.917 3 H 0.072 0.928 4 C -0.099 4.099 5 C 0.030 3.970 6 C -0.518 4.518 7 H 0.050 0.950 8 C 0.056 3.944 9 N -0.894 5.894 10 Si 0.886 3.114 11 H -0.283 1.283 12 H -0.288 1.288 13 H -0.276 1.276 14 N -0.663 5.663 15 C 0.090 3.910 16 H 0.075 0.925 17 C -0.108 4.108 18 C -0.071 4.071 19 C 0.166 3.834 20 N -0.508 5.508 21 C 0.308 3.692 22 O -0.484 6.484 23 C -0.193 4.193 24 C -0.063 4.063 25 C -0.128 4.128 26 C -0.101 4.101 27 H 0.044 0.956 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.046 0.954 31 H 0.045 0.955 32 H 0.006 0.994 33 H 0.033 0.967 34 H 0.258 0.742 35 H 0.336 0.664 36 H 0.064 0.936 37 H 0.093 0.907 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.398 0.602 41 H 0.138 0.862 42 H 0.137 0.863 43 H 0.076 0.924 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.824 2.920 17.919 22.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.026 4.026 3 H 0.090 0.910 4 C -0.137 4.137 5 C -0.007 4.007 6 C -0.557 4.557 7 H 0.068 0.932 8 C -0.144 4.144 9 N -0.534 5.534 10 Si 0.714 3.286 11 H -0.209 1.209 12 H -0.213 1.213 13 H -0.201 1.201 14 N -0.292 5.292 15 C -0.021 4.021 16 H 0.093 0.907 17 C -0.146 4.146 18 C -0.110 4.110 19 C 0.031 3.969 20 N -0.227 5.227 21 C 0.127 3.873 22 O -0.291 6.291 23 C -0.214 4.214 24 C -0.089 4.089 25 C -0.131 4.131 26 C -0.140 4.140 27 H 0.063 0.937 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.025 0.975 33 H 0.052 0.948 34 H 0.067 0.933 35 H 0.155 0.845 36 H 0.083 0.917 37 H 0.111 0.889 38 H 0.106 0.894 39 H 0.106 0.894 40 H 0.255 0.745 41 H 0.156 0.844 42 H 0.155 0.845 43 H 0.094 0.906 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -12.294 3.839 17.723 21.909 hybrid contribution -1.401 -0.914 -0.369 1.713 sum -13.695 2.925 17.355 22.300 Atomic orbital electron populations 1.22636 0.98704 1.01253 1.01461 1.21869 0.90859 0.98237 0.91648 0.90956 1.21635 1.00666 0.98361 0.93005 1.18991 0.88251 0.96448 0.97019 1.21352 0.91819 1.34010 1.08482 0.93188 1.24990 0.97162 0.95813 0.96462 1.69971 1.02145 1.44427 1.36850 0.86697 0.78129 0.79988 0.83750 1.20887 1.21344 1.20057 1.60575 1.57220 1.08778 1.02615 1.21636 0.93154 0.97130 0.90155 0.90664 1.21621 0.99285 0.97170 0.96545 1.20498 0.93064 1.00810 0.96590 1.20973 0.94840 0.91286 0.89846 1.67021 1.34481 1.14748 1.06403 1.19035 0.88425 0.91542 0.88295 1.84788 1.92763 1.35648 1.15925 1.22019 0.98419 1.01436 0.99532 1.21533 0.98850 0.95557 0.92982 1.20484 0.93297 1.01175 0.98150 1.21268 1.00533 0.99774 0.92399 0.93705 0.92836 0.92284 0.93505 0.93623 0.97531 0.94832 0.93263 0.84497 0.91694 0.88887 0.89448 0.89442 0.74474 0.84415 0.84516 0.90597 0.89993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.26 9.12 37.16 0.34 -1.92 16 2 C 0.08 1.31 2.55 -67.72 -0.17 1.14 16 3 H 0.07 1.21 7.35 -51.93 -0.38 0.83 16 4 C -0.10 -1.98 4.83 -26.73 -0.13 -2.11 16 5 C 0.03 0.77 4.86 -27.88 -0.14 0.64 16 6 C -0.52 -14.84 9.11 -34.44 -0.31 -15.15 16 7 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 8 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 9 N -0.89 -27.18 13.29 55.43 0.74 -26.44 16 10 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 11 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 13 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 14 N -0.66 -9.71 5.57 -99.69 -0.56 -10.26 16 15 C 0.09 1.13 2.54 -67.66 -0.17 0.96 16 16 H 0.08 1.02 7.16 -51.93 -0.37 0.65 16 17 C -0.11 -1.38 5.59 -26.71 -0.15 -1.53 16 18 C -0.07 -0.87 5.91 -28.01 -0.17 -1.03 16 19 C 0.17 2.08 6.62 -82.43 -0.55 1.53 16 20 N -0.51 -6.82 10.21 -9.58 -0.10 -6.92 16 21 C 0.31 3.55 7.75 -17.27 -0.13 3.42 16 22 O -0.48 -4.76 13.56 -18.73 -0.25 -5.01 16 23 C -0.19 -1.82 10.06 -39.36 -0.40 -2.22 16 24 C -0.06 -0.59 9.74 -39.20 -0.38 -0.97 16 25 C -0.13 -1.41 5.74 -104.57 -0.60 -2.01 16 26 C -0.10 -1.02 4.93 -28.10 -0.14 -1.16 16 27 H 0.04 0.49 6.59 -51.93 -0.34 0.15 16 28 H 0.05 0.63 8.03 -51.93 -0.42 0.21 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.01 0.18 8.14 -51.93 -0.42 -0.25 16 33 H 0.03 0.92 7.75 -51.93 -0.40 0.52 16 34 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 35 H 0.34 4.39 7.77 -39.29 -0.31 4.08 16 36 H 0.06 0.80 8.10 -51.93 -0.42 0.38 16 37 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 38 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.40 1.83 9.06 45.56 0.41 2.24 16 41 H 0.14 0.96 8.06 -52.48 -0.42 0.53 16 42 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 43 H 0.08 0.71 6.54 -51.93 -0.34 0.37 16 44 H 0.08 0.77 7.92 -51.92 -0.41 0.36 16 LS Contribution 353.72 15.07 5.33 5.33 Total: -1.00 -33.14 353.72 -9.38 -42.52 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -6.32 Total: 2.71 kcal Atomic # 6 Polarization: -15.68 SS G_CDS: -3.19 Total: -18.87 kcal Atomic # 7 Polarization: -43.71 SS G_CDS: 0.08 Total: -43.63 kcal Atomic # 8 Polarization: -4.76 SS G_CDS: -0.25 Total: -5.01 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.14 -9.38 -42.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172479659.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.735 kcal (2) G-P(sol) polarization free energy of solvation -33.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.20 seconds