Wall clock time and date at job start Tue Mar 31 2020 07:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.46878 * 2 1 4 4 C 1.53005 * 109.46951 * 240.00831 * 2 1 3 5 5 C 1.52997 * 109.47037 * 174.99847 * 4 2 1 6 6 C 1.50708 * 109.46941 * 179.97438 * 5 4 2 7 7 H 1.07999 * 119.99575 * 0.02562 * 6 5 4 8 8 C 1.37877 * 119.99866 * 179.97438 * 6 5 4 9 9 N 1.31510 * 119.99960 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 119.99946 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.46994 * 90.00141 * 10 8 6 12 12 H 1.48496 * 109.47405 * 210.00686 * 10 8 6 13 13 H 1.48504 * 109.47220 * 330.00671 * 10 8 6 14 14 N 1.46887 * 109.47391 * 120.00673 * 2 1 3 15 15 C 1.46908 * 110.99897 * 274.43549 * 14 2 1 16 16 H 1.08996 * 109.68186 * 341.50591 * 15 14 2 17 17 C 1.53330 * 109.68515 * 220.93335 * 15 14 2 18 18 C 1.52711 * 108.42291 * 170.47890 * 17 15 14 19 19 C 1.50736 * 110.58686 * 51.30340 * 18 17 15 20 20 N 1.32795 * 117.48886 * 162.38979 * 19 18 17 21 21 C 1.31900 * 122.34927 * 179.32486 * 20 19 18 22 22 O 1.35677 * 119.76733 * 180.02562 * 21 20 19 23 23 C 1.38929 * 120.46106 * 0.03442 * 21 20 19 24 24 C 1.38140 * 118.79317 * 0.13344 * 23 21 20 25 25 C 1.37487 * 122.34881 * 341.99223 * 19 18 17 26 26 C 1.50510 * 122.83497 * 0.82072 * 25 19 18 27 27 H 1.09006 * 109.46876 * 305.55047 * 1 2 3 28 28 H 1.08999 * 109.47005 * 185.55385 * 1 2 3 29 29 H 1.09001 * 109.47454 * 65.54597 * 1 2 3 30 30 H 1.09006 * 109.46574 * 295.00126 * 4 2 1 31 31 H 1.08998 * 109.47168 * 54.99764 * 4 2 1 32 32 H 1.08997 * 109.47117 * 299.99574 * 5 4 2 33 33 H 1.08998 * 109.47210 * 59.99943 * 5 4 2 34 34 H 0.97000 * 119.99639 * 179.97438 * 9 8 6 35 35 H 1.00898 * 111.00332 * 38.38756 * 14 2 1 36 36 H 1.08998 * 109.67715 * 290.21323 * 17 15 14 37 37 H 1.09002 * 109.67542 * 50.74673 * 17 15 14 38 38 H 1.09000 * 109.25778 * 291.01232 * 18 17 15 39 39 H 1.09002 * 109.22094 * 171.56146 * 18 17 15 40 40 H 0.96698 * 113.99925 * 269.97770 * 22 21 20 41 41 H 1.08004 * 120.60465 * 180.15222 * 23 21 20 42 42 H 1.08001 * 120.52397 * 179.97438 * 24 23 21 43 43 H 1.08996 * 109.26137 * 222.05554 * 26 25 19 44 44 H 1.09008 * 109.22565 * 102.60002 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 3.5648 -0.6131 -1.3139 6 6 4.0671 -1.3239 -2.5442 7 1 3.3686 -1.8042 -3.2133 8 6 5.4183 -1.3601 -2.8160 9 7 6.2688 -0.7748 -2.0014 10 14 6.0409 -2.2405 -4.3413 11 1 6.0904 -1.2863 -5.4781 12 1 7.4024 -2.7746 -4.0836 13 1 5.1248 -3.3607 -4.6749 14 7 2.0197 -0.6926 1.1992 15 6 2.0952 0.2257 2.3435 16 1 2.0917 1.2561 1.9882 17 6 3.3788 -0.0434 3.1378 18 6 3.5501 1.0693 4.1696 19 6 2.2882 1.2437 4.9754 20 7 2.3812 1.9017 6.1252 21 6 1.3361 2.1208 6.8995 22 8 1.4910 2.7999 8.0638 23 6 0.0780 1.6608 6.5313 24 6 -0.0561 0.9690 5.3431 25 6 1.0732 0.7570 4.5544 26 6 0.9007 -0.0042 3.2675 27 1 -0.3633 0.5975 0.8362 28 1 -0.3633 -1.0228 0.0995 29 1 -0.3634 0.4254 -0.9355 30 1 1.7515 -1.7714 -1.2058 31 1 1.6053 -0.2615 -2.1370 32 1 3.8531 0.4371 -1.3575 33 1 3.9994 -1.0727 -0.4262 34 1 7.2195 -0.8006 -2.1924 35 1 1.4442 -1.4927 1.4151 36 1 3.3018 -1.0053 3.6448 37 1 4.2338 -0.0518 2.4618 38 1 3.7808 2.0029 3.6565 39 1 4.3717 0.8146 4.8391 40 1 1.6896 2.2366 8.8243 41 1 -0.7798 1.8410 7.1624 42 1 -1.0210 0.5985 5.0300 43 1 -0.0087 0.3324 2.7698 44 1 0.8166 -1.0684 3.4885 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172479659.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:53:39 Heat of formation + Delta-G solvation = -53.269908 kcal Electronic energy + Delta-G solvation = -22880.030932 eV Core-core repulsion = 19602.283677 eV Total energy + Delta-G solvation = -3277.747255 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 15.45 seconds Orbital eigenvalues (eV) -41.82437 -39.56555 -38.15085 -36.29267 -34.95425 -34.31329 -32.46641 -30.98323 -30.55445 -28.31118 -26.89413 -24.99272 -23.77448 -23.60545 -23.00898 -21.65187 -20.69542 -19.40070 -18.32327 -18.00919 -16.98968 -16.80661 -16.51909 -16.11198 -15.82533 -15.22794 -15.08872 -14.94083 -14.53166 -14.28729 -14.10485 -14.01936 -13.81633 -13.50817 -13.24274 -13.03895 -12.97567 -12.82560 -12.71023 -12.49359 -12.34879 -12.19498 -12.08089 -11.77973 -11.49061 -11.41634 -11.15094 -10.87578 -10.67232 -10.45291 -10.37049 -9.59273 -9.06713 -8.10691 -6.20640 -0.00146 0.21941 1.41228 1.42610 1.53420 2.45708 2.47635 2.74038 3.21257 3.23163 3.52051 3.76343 3.78395 3.90951 3.98698 4.15605 4.27772 4.32472 4.37569 4.46650 4.48837 4.58274 4.58966 4.71477 4.80917 4.84831 4.92715 4.97170 5.05280 5.06782 5.10849 5.17546 5.27858 5.34592 5.36096 5.38805 5.53096 5.60419 5.63645 5.94796 6.08562 6.35947 6.38929 6.63588 6.75719 6.96141 6.99940 7.47200 9.00327 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.028307 B = 0.003039 C = 0.002793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.900192 B = 9212.187945 C =10021.090988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.092 3.908 3 H 0.055 0.945 4 C -0.089 4.089 5 C 0.039 3.961 6 C -0.541 4.541 7 H 0.054 0.946 8 C -0.002 4.002 9 N -0.932 5.932 10 Si 0.959 3.041 11 H -0.274 1.274 12 H -0.284 1.284 13 H -0.264 1.264 14 N -0.682 5.682 15 C 0.094 3.906 16 H 0.061 0.939 17 C -0.101 4.101 18 C -0.065 4.065 19 C 0.144 3.856 20 N -0.542 5.542 21 C 0.294 3.706 22 O -0.495 6.495 23 C -0.185 4.185 24 C -0.057 4.057 25 C -0.135 4.135 26 C -0.087 4.087 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.059 0.941 30 H 0.049 0.951 31 H 0.046 0.954 32 H -0.027 1.027 33 H 0.007 0.993 34 H 0.260 0.740 35 H 0.348 0.652 36 H 0.070 0.930 37 H 0.058 0.942 38 H 0.076 0.924 39 H 0.084 0.916 40 H 0.418 0.582 41 H 0.168 0.832 42 H 0.172 0.828 43 H 0.094 0.906 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.670 2.019 18.215 24.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 H 0.074 0.926 4 C -0.127 4.127 5 C 0.002 3.998 6 C -0.579 4.579 7 H 0.073 0.927 8 C -0.199 4.199 9 N -0.573 5.573 10 Si 0.784 3.216 11 H -0.200 1.200 12 H -0.209 1.209 13 H -0.188 1.188 14 N -0.313 5.313 15 C -0.016 4.016 16 H 0.080 0.920 17 C -0.140 4.140 18 C -0.103 4.103 19 C 0.009 3.991 20 N -0.262 5.262 21 C 0.113 3.887 22 O -0.305 6.305 23 C -0.206 4.206 24 C -0.082 4.082 25 C -0.137 4.137 26 C -0.126 4.126 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.068 0.932 31 H 0.065 0.935 32 H -0.008 1.008 33 H 0.026 0.974 34 H 0.069 0.931 35 H 0.168 0.832 36 H 0.089 0.911 37 H 0.077 0.923 38 H 0.095 0.905 39 H 0.103 0.897 40 H 0.278 0.722 41 H 0.185 0.815 42 H 0.189 0.811 43 H 0.113 0.887 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -15.157 2.928 18.036 23.740 hybrid contribution -0.468 -0.596 -0.378 0.847 sum -15.625 2.331 17.658 23.693 Atomic orbital electron populations 1.22481 0.95174 1.02646 1.02519 1.21602 0.93496 0.96528 0.90182 0.92647 1.21466 0.96418 0.99208 0.95592 1.18822 0.92337 0.93616 0.95043 1.21831 0.92407 1.34225 1.09457 0.92730 1.25938 0.97497 0.96598 0.99898 1.70120 1.02497 1.45730 1.38910 0.85546 0.77579 0.78989 0.79496 1.20010 1.20915 1.18806 1.60407 1.58128 1.09724 1.03028 1.21521 0.94241 0.95868 0.89943 0.92049 1.21498 0.98444 0.97835 0.96187 1.20353 0.93769 0.99907 0.96312 1.20909 0.95299 0.92711 0.90160 1.66920 1.36140 1.15953 1.07184 1.19366 0.88968 0.91780 0.88606 1.84739 1.92826 1.36582 1.16337 1.22325 0.98300 1.00179 0.99771 1.21902 0.99501 0.94536 0.92265 1.20584 0.93290 1.01173 0.98676 1.21133 0.99448 1.00636 0.91399 0.91493 0.91449 0.92181 0.93221 0.93546 1.00841 0.97440 0.93127 0.83234 0.91087 0.92310 0.90531 0.89743 0.72162 0.81494 0.81068 0.88750 0.88556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.75 9.12 71.98 0.66 -3.09 16 2 C 0.09 2.86 2.55 44.92 0.11 2.97 16 3 H 0.06 1.90 7.35 -2.39 -0.02 1.89 16 4 C -0.09 -3.58 4.83 30.59 0.15 -3.44 16 5 C 0.04 2.09 4.86 29.85 0.15 2.24 16 6 C -0.54 -31.58 9.11 25.60 0.23 -31.35 16 7 H 0.05 3.06 7.74 -2.91 -0.02 3.04 16 8 C 0.00 -0.12 5.46 84.66 0.46 0.34 16 9 N -0.93 -58.33 13.29 21.45 0.28 -58.05 16 10 Si 0.96 45.40 29.54 68.60 2.03 47.42 16 11 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 12 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 13 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 14 N -0.68 -19.86 5.57 -469.31 -2.61 -22.47 16 15 C 0.09 2.37 2.54 44.94 0.11 2.49 16 16 H 0.06 1.71 7.16 -2.39 -0.02 1.69 16 17 C -0.10 -2.74 5.59 30.61 0.17 -2.57 16 18 C -0.07 -1.69 5.91 29.76 0.18 -1.51 16 19 C 0.14 3.59 6.62 42.25 0.28 3.87 16 20 N -0.54 -14.55 10.21 -297.25 -3.03 -17.58 16 21 C 0.29 6.39 7.75 84.85 0.66 7.05 16 22 O -0.49 -9.11 13.56 -89.94 -1.22 -10.33 16 23 C -0.19 -2.93 10.06 22.41 0.23 -2.70 16 24 C -0.06 -0.85 9.74 22.52 0.22 -0.63 16 25 C -0.13 -2.68 5.74 -19.83 -0.11 -2.80 16 26 C -0.09 -1.55 4.93 29.71 0.15 -1.41 16 27 H 0.07 1.21 6.59 -2.38 -0.02 1.20 16 28 H 0.07 1.33 8.03 -2.39 -0.02 1.31 16 29 H 0.06 1.33 8.14 -2.39 -0.02 1.32 16 30 H 0.05 1.96 8.14 -2.38 -0.02 1.94 16 31 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 32 H -0.03 -1.59 8.14 -2.39 -0.02 -1.61 16 33 H 0.01 0.42 7.75 -2.39 -0.02 0.40 16 34 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 35 H 0.35 8.52 7.77 -89.70 -0.70 7.82 16 36 H 0.07 1.80 8.10 -2.39 -0.02 1.78 16 37 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 39 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 40 H 0.42 3.32 9.06 -74.06 -0.67 2.64 16 41 H 0.17 1.61 8.06 -2.91 -0.02 1.59 16 42 H 0.17 1.37 8.06 -2.91 -0.02 1.35 16 43 H 0.09 1.37 6.54 -2.39 -0.02 1.36 16 44 H 0.10 1.49 7.92 -2.38 -0.02 1.47 16 Total: -1.00 -74.08 353.72 -1.29 -75.37 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: -0.36 Total: 16.18 kcal Atomic # 6 Polarization: -34.17 SS G_CDS: 3.64 Total: -30.54 kcal Atomic # 7 Polarization: -92.74 SS G_CDS: -5.36 Total: -98.10 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: -1.22 Total: -10.33 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.42 kcal Total: -74.08 -1.29 -75.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172479659.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.095 kcal (2) G-P(sol) polarization free energy of solvation -74.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 15.46 seconds