Wall clock time and date at job start Tue Mar 31 2020 07:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47250 * 2 1 4 4 C 1.52997 * 109.47049 * 120.00119 * 2 1 3 5 5 C 1.53006 * 109.47127 * 185.00237 * 4 2 1 6 6 C 1.50698 * 109.47184 * 180.02562 * 5 4 2 7 7 H 1.08005 * 119.99819 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00046 * 180.02562 * 6 5 4 9 9 N 1.31520 * 119.99809 * 179.97438 * 8 6 5 10 10 Si 1.86799 * 119.99912 * 359.97438 * 8 6 5 11 11 H 1.48498 * 109.47123 * 90.00333 * 10 8 6 12 12 H 1.48506 * 109.46940 * 210.00455 * 10 8 6 13 13 H 1.48493 * 109.47121 * 329.99876 * 10 8 6 14 14 N 1.46905 * 109.46983 * 239.99815 * 2 1 3 15 15 C 1.46907 * 110.99787 * 85.00388 * 14 2 1 16 16 H 1.08997 * 109.68638 * 325.54096 * 15 14 2 17 17 C 1.53324 * 109.69029 * 204.99873 * 15 14 2 18 18 C 1.52706 * 108.42740 * 170.42897 * 17 15 14 19 19 C 1.50741 * 110.59280 * 51.20989 * 18 17 15 20 20 N 1.32796 * 117.48813 * 162.33649 * 19 18 17 21 21 C 1.31891 * 122.35355 * 179.75646 * 20 19 18 22 22 O 1.35684 * 119.76663 * 179.97438 * 21 20 19 23 23 C 1.38929 * 120.46574 * 359.97438 * 21 20 19 24 24 C 1.38147 * 118.78587 * 0.10859 * 23 21 20 25 25 C 1.37482 * 122.36089 * 342.29564 * 19 18 17 26 26 C 1.50526 * 122.83655 * 0.44667 * 25 19 18 27 27 H 1.08998 * 109.47250 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47252 * 300.00076 * 1 2 3 29 29 H 1.09000 * 109.46959 * 60.00033 * 1 2 3 30 30 H 1.09001 * 109.47502 * 65.00394 * 4 2 1 31 31 H 1.09001 * 109.47289 * 305.00191 * 4 2 1 32 32 H 1.09001 * 109.47002 * 299.99574 * 5 4 2 33 33 H 1.08993 * 109.46955 * 60.00011 * 5 4 2 34 34 H 0.97004 * 119.99097 * 179.97438 * 9 8 6 35 35 H 1.00897 * 111.00013 * 321.04620 * 14 2 1 36 36 H 1.09001 * 109.67292 * 290.16825 * 17 15 14 37 37 H 1.09001 * 109.67380 * 50.66078 * 17 15 14 38 38 H 1.09000 * 109.25746 * 171.49384 * 18 17 15 39 39 H 1.08996 * 109.25598 * 290.96568 * 18 17 15 40 40 H 0.96705 * 113.99802 * 270.00297 * 22 21 20 41 41 H 1.08004 * 120.60964 * 180.13411 * 23 21 20 42 42 H 1.07999 * 120.51657 * 179.97438 * 24 23 21 43 43 H 1.08996 * 109.25768 * 222.26132 * 26 25 19 44 44 H 1.08998 * 109.25114 * 102.81906 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.6133 1.3137 6 6 4.0672 -1.3242 2.5438 7 1 3.3687 -1.8047 3.2129 8 6 5.4185 -1.3604 2.8156 9 7 5.8568 -1.9805 3.8894 10 14 6.6265 -0.5288 1.6586 11 1 6.8311 0.8789 2.0849 12 1 7.9238 -1.2507 1.6952 13 1 6.0850 -0.5538 0.2762 14 7 2.0197 -0.6926 -1.1995 15 6 2.0825 0.2226 -2.3469 16 1 1.2646 0.9407 -2.2891 17 6 1.9772 -0.5764 -3.6513 18 6 1.8044 0.4067 -4.8070 19 6 2.8671 1.4746 -4.7580 20 7 3.0789 2.1797 -5.8632 21 6 3.9812 3.1396 -5.9260 22 8 4.1543 3.8268 -7.0831 23 6 4.7557 3.4520 -4.8158 24 6 4.5642 2.7380 -3.6488 25 6 3.6026 1.7295 -3.6248 26 6 3.4192 0.9621 -2.3429 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.7517 -1.7716 1.2056 31 1 1.6053 -0.2618 2.1370 32 1 3.9995 -1.0728 0.4260 33 1 3.8532 0.4369 1.3574 34 1 6.8075 -2.0062 4.0804 35 1 1.4496 -1.4980 -1.4100 36 1 2.8861 -1.1599 -3.7986 37 1 1.1165 -1.2435 -3.6045 38 1 1.8796 -0.1320 -5.7515 39 1 0.8224 0.8744 -4.7372 40 1 4.8116 3.4383 -7.6767 41 1 5.4938 4.2391 -4.8640 42 1 5.1511 2.9572 -2.7691 43 1 3.4440 1.6553 -1.5022 44 1 4.2291 0.2403 -2.2371 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172479660.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:54:04 Heat of formation + Delta-G solvation = -27.474672 kcal Electronic energy + Delta-G solvation = -23180.909770 eV Core-core repulsion = 19904.281081 eV Total energy + Delta-G solvation = -3276.628690 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.98774 -38.63511 -37.22628 -35.20818 -33.51324 -32.92125 -31.18523 -30.12449 -29.55228 -27.35557 -25.29785 -24.23191 -22.85497 -22.75530 -20.99965 -20.08954 -19.71875 -18.63844 -17.12070 -16.57569 -16.29049 -16.09800 -15.04789 -14.87871 -14.34776 -14.25282 -14.09613 -13.80269 -13.48526 -13.28343 -13.06900 -12.70713 -12.62352 -12.47817 -12.37346 -12.11988 -11.82370 -11.72616 -11.38766 -11.32631 -11.04785 -10.89157 -10.65636 -10.43821 -9.87110 -9.81959 -9.65669 -9.55235 -9.47859 -9.01803 -8.74635 -8.44605 -8.07390 -5.95657 -3.91516 0.81294 1.01439 3.21127 3.35516 3.42922 3.49017 3.55337 4.14924 4.27020 4.53527 4.59170 4.66938 4.71323 4.87338 4.96703 5.15528 5.24552 5.27574 5.34199 5.40127 5.42017 5.44571 5.49347 5.57794 5.70172 5.72280 5.84277 5.87688 5.97822 6.00626 6.16132 6.19384 6.24139 6.30772 6.41159 6.54504 6.70949 7.09755 7.24271 7.32581 7.50378 7.66271 7.73848 7.74444 7.93373 8.65036 9.10973 9.68504 11.18384 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.016159 B = 0.004243 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.345107 B = 6598.142563 C = 7900.751519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.081 3.919 3 H 0.071 0.929 4 C -0.090 4.090 5 C -0.005 4.005 6 C -0.516 4.516 7 H 0.067 0.933 8 C 0.063 3.937 9 N -0.910 5.910 10 Si 0.879 3.121 11 H -0.281 1.281 12 H -0.291 1.291 13 H -0.261 1.261 14 N -0.670 5.670 15 C 0.089 3.911 16 H 0.046 0.954 17 C -0.120 4.120 18 C -0.064 4.064 19 C 0.154 3.846 20 N -0.509 5.509 21 C 0.304 3.696 22 O -0.485 6.485 23 C -0.187 4.187 24 C -0.062 4.062 25 C -0.123 4.123 26 C -0.070 4.070 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.044 0.956 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.032 0.968 33 H 0.001 0.999 34 H 0.260 0.740 35 H 0.341 0.659 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.398 0.602 41 H 0.139 0.861 42 H 0.141 0.859 43 H 0.079 0.921 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.529 8.091 -19.988 22.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.029 4.029 3 H 0.089 0.911 4 C -0.128 4.128 5 C -0.043 4.043 6 C -0.554 4.554 7 H 0.086 0.914 8 C -0.137 4.137 9 N -0.550 5.550 10 Si 0.706 3.294 11 H -0.207 1.207 12 H -0.218 1.218 13 H -0.185 1.185 14 N -0.301 5.301 15 C -0.021 4.021 16 H 0.064 0.936 17 C -0.159 4.159 18 C -0.103 4.103 19 C 0.019 3.981 20 N -0.228 5.228 21 C 0.123 3.877 22 O -0.291 6.291 23 C -0.208 4.208 24 C -0.088 4.088 25 C -0.125 4.125 26 C -0.109 4.109 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.050 0.950 33 H 0.019 0.981 34 H 0.070 0.930 35 H 0.160 0.840 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.105 0.895 39 H 0.101 0.899 40 H 0.255 0.745 41 H 0.157 0.843 42 H 0.159 0.841 43 H 0.097 0.903 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.593 8.353 -20.261 22.886 hybrid contribution 0.757 0.626 -0.220 1.006 sum -5.836 8.979 -20.482 23.112 Atomic orbital electron populations 1.22519 0.98273 1.01744 1.01382 1.21813 0.91318 0.98224 0.91530 0.91077 1.21450 0.98944 0.99076 0.93328 1.19465 0.91532 0.95706 0.97551 1.21274 0.92784 1.33873 1.07504 0.91439 1.25033 0.98453 0.95149 0.95052 1.69936 1.14400 1.44115 1.26503 0.86780 0.80460 0.79458 0.82664 1.20681 1.21753 1.18505 1.60507 1.58005 1.08900 1.02732 1.21433 0.96169 0.94301 0.90183 0.93576 1.21777 1.03337 0.97477 0.93278 1.20353 0.96080 0.93813 1.00022 1.20759 0.95692 0.94554 0.87110 1.66932 1.19030 1.06938 1.29853 1.18980 0.91792 0.89879 0.87020 1.84788 1.64806 1.49944 1.29585 1.22059 1.01879 1.02863 0.94041 1.21609 0.95941 0.93218 0.98000 1.20628 0.97166 0.97758 0.96950 1.20487 0.99148 0.98661 0.92555 0.92575 0.92157 0.93679 0.92814 0.92974 0.95005 0.98070 0.92985 0.84020 0.90382 0.90683 0.89495 0.89874 0.74528 0.84276 0.84091 0.90300 0.88771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.18 9.15 37.16 0.34 -1.84 16 2 C 0.08 1.19 2.41 -67.71 -0.16 1.03 16 3 H 0.07 1.08 7.29 -51.93 -0.38 0.71 16 4 C -0.09 -1.71 4.83 -26.73 -0.13 -1.84 16 5 C -0.01 -0.12 3.93 -27.88 -0.11 -0.23 16 6 C -0.52 -14.81 9.66 -34.44 -0.33 -15.15 16 7 H 0.07 2.09 7.99 -52.48 -0.42 1.67 16 8 C 0.06 1.86 5.47 -17.82 -0.10 1.77 16 9 N -0.91 -28.49 13.96 55.43 0.77 -27.72 16 10 Si 0.88 21.91 27.47 -169.99 -4.67 17.24 16 11 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 13 H -0.26 -6.18 6.54 56.52 0.37 -5.81 16 14 N -0.67 -9.12 5.52 -99.69 -0.55 -9.67 16 15 C 0.09 1.04 2.31 -67.67 -0.16 0.89 16 16 H 0.05 0.54 7.09 -51.93 -0.37 0.17 16 17 C -0.12 -1.17 5.35 -26.71 -0.14 -1.32 16 18 C -0.06 -0.64 5.91 -28.01 -0.17 -0.80 16 19 C 0.15 1.88 6.62 -82.43 -0.55 1.33 16 20 N -0.51 -6.68 10.21 -9.58 -0.10 -6.78 16 21 C 0.30 3.61 7.75 -17.27 -0.13 3.47 16 22 O -0.48 -4.84 13.56 -18.75 -0.25 -5.10 16 23 C -0.19 -1.97 10.06 -39.36 -0.40 -2.37 16 24 C -0.06 -0.69 9.74 -39.20 -0.38 -1.07 16 25 C -0.12 -1.49 5.74 -104.56 -0.60 -2.09 16 26 C -0.07 -0.90 5.15 -28.09 -0.14 -1.04 16 27 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.04 0.49 7.44 -51.93 -0.39 0.10 16 30 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.03 0.76 6.81 -51.93 -0.35 0.41 16 33 H 0.00 0.02 7.57 -51.93 -0.39 -0.37 16 34 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 35 H 0.34 4.14 7.98 -39.29 -0.31 3.83 16 36 H 0.08 0.82 8.10 -51.93 -0.42 0.40 16 37 H 0.07 0.62 7.94 -51.93 -0.41 0.20 16 38 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.40 1.93 9.06 45.56 0.41 2.35 16 41 H 0.14 1.14 8.06 -52.48 -0.42 0.71 16 42 H 0.14 1.36 8.06 -52.49 -0.42 0.94 16 43 H 0.08 1.05 7.63 -51.93 -0.40 0.66 16 44 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 351.87 15.07 5.30 5.30 Total: -1.00 -33.61 351.87 -9.05 -42.67 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -6.40 Total: 3.32 kcal Atomic # 6 Polarization: -16.11 SS G_CDS: -3.16 Total: -19.27 kcal Atomic # 7 Polarization: -44.29 SS G_CDS: 0.13 Total: -44.16 kcal Atomic # 8 Polarization: -4.84 SS G_CDS: -0.25 Total: -5.10 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.67 Total: 17.24 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.61 -9.05 -42.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172479660.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.194 kcal (2) G-P(sol) polarization free energy of solvation -33.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds