Wall clock time and date at job start Tue Mar 31 2020 07:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47250 * 2 1 4 4 C 1.52997 * 109.47049 * 120.00119 * 2 1 3 5 5 C 1.53006 * 109.47127 * 185.00237 * 4 2 1 6 6 C 1.50698 * 109.47184 * 180.02562 * 5 4 2 7 7 H 1.08005 * 119.99819 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00046 * 180.02562 * 6 5 4 9 9 N 1.31520 * 119.99809 * 179.97438 * 8 6 5 10 10 Si 1.86799 * 119.99912 * 359.97438 * 8 6 5 11 11 H 1.48498 * 109.47123 * 90.00333 * 10 8 6 12 12 H 1.48506 * 109.46940 * 210.00455 * 10 8 6 13 13 H 1.48493 * 109.47121 * 329.99876 * 10 8 6 14 14 N 1.46905 * 109.46983 * 239.99815 * 2 1 3 15 15 C 1.46907 * 110.99787 * 85.00388 * 14 2 1 16 16 H 1.08997 * 109.68638 * 325.54096 * 15 14 2 17 17 C 1.53324 * 109.69029 * 204.99873 * 15 14 2 18 18 C 1.52706 * 108.42740 * 170.42897 * 17 15 14 19 19 C 1.50741 * 110.59280 * 51.20989 * 18 17 15 20 20 N 1.32796 * 117.48813 * 162.33649 * 19 18 17 21 21 C 1.31891 * 122.35355 * 179.75646 * 20 19 18 22 22 O 1.35684 * 119.76663 * 179.97438 * 21 20 19 23 23 C 1.38929 * 120.46574 * 359.97438 * 21 20 19 24 24 C 1.38147 * 118.78587 * 0.10859 * 23 21 20 25 25 C 1.37482 * 122.36089 * 342.29564 * 19 18 17 26 26 C 1.50526 * 122.83655 * 0.44667 * 25 19 18 27 27 H 1.08998 * 109.47250 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47252 * 300.00076 * 1 2 3 29 29 H 1.09000 * 109.46959 * 60.00033 * 1 2 3 30 30 H 1.09001 * 109.47502 * 65.00394 * 4 2 1 31 31 H 1.09001 * 109.47289 * 305.00191 * 4 2 1 32 32 H 1.09001 * 109.47002 * 299.99574 * 5 4 2 33 33 H 1.08993 * 109.46955 * 60.00011 * 5 4 2 34 34 H 0.97004 * 119.99097 * 179.97438 * 9 8 6 35 35 H 1.00897 * 111.00013 * 321.04620 * 14 2 1 36 36 H 1.09001 * 109.67292 * 290.16825 * 17 15 14 37 37 H 1.09001 * 109.67380 * 50.66078 * 17 15 14 38 38 H 1.09000 * 109.25746 * 171.49384 * 18 17 15 39 39 H 1.08996 * 109.25598 * 290.96568 * 18 17 15 40 40 H 0.96705 * 113.99802 * 270.00297 * 22 21 20 41 41 H 1.08004 * 120.60964 * 180.13411 * 23 21 20 42 42 H 1.07999 * 120.51657 * 179.97438 * 24 23 21 43 43 H 1.08996 * 109.25768 * 222.26132 * 26 25 19 44 44 H 1.08998 * 109.25114 * 102.81906 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.6133 1.3137 6 6 4.0672 -1.3242 2.5438 7 1 3.3687 -1.8047 3.2129 8 6 5.4185 -1.3604 2.8156 9 7 5.8568 -1.9805 3.8894 10 14 6.6265 -0.5288 1.6586 11 1 6.8311 0.8789 2.0849 12 1 7.9238 -1.2507 1.6952 13 1 6.0850 -0.5538 0.2762 14 7 2.0197 -0.6926 -1.1995 15 6 2.0825 0.2226 -2.3469 16 1 1.2646 0.9407 -2.2891 17 6 1.9772 -0.5764 -3.6513 18 6 1.8044 0.4067 -4.8070 19 6 2.8671 1.4746 -4.7580 20 7 3.0789 2.1797 -5.8632 21 6 3.9812 3.1396 -5.9260 22 8 4.1543 3.8268 -7.0831 23 6 4.7557 3.4520 -4.8158 24 6 4.5642 2.7380 -3.6488 25 6 3.6026 1.7295 -3.6248 26 6 3.4192 0.9621 -2.3429 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.7517 -1.7716 1.2056 31 1 1.6053 -0.2618 2.1370 32 1 3.9995 -1.0728 0.4260 33 1 3.8532 0.4369 1.3574 34 1 6.8075 -2.0062 4.0804 35 1 1.4496 -1.4980 -1.4100 36 1 2.8861 -1.1599 -3.7986 37 1 1.1165 -1.2435 -3.6045 38 1 1.8796 -0.1320 -5.7515 39 1 0.8224 0.8744 -4.7372 40 1 4.8116 3.4383 -7.6767 41 1 5.4938 4.2391 -4.8640 42 1 5.1511 2.9572 -2.7691 43 1 3.4440 1.6553 -1.5022 44 1 4.2291 0.2403 -2.2371 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172479660.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:54:04 Heat of formation + Delta-G solvation = -52.732415 kcal Electronic energy + Delta-G solvation = -23182.005028 eV Core-core repulsion = 19904.281081 eV Total energy + Delta-G solvation = -3277.723948 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.82681 -39.55716 -38.17733 -36.32065 -34.90680 -34.32583 -32.71933 -31.01737 -30.83674 -28.30326 -27.05978 -25.08336 -23.75402 -23.65330 -22.66493 -21.24867 -20.84561 -19.43121 -18.77106 -17.96214 -17.21318 -16.90170 -16.28594 -16.14497 -15.84357 -15.17691 -15.06720 -14.84137 -14.73061 -14.40690 -14.22235 -14.12527 -13.91598 -13.67140 -13.25846 -13.21237 -13.08704 -12.85527 -12.71474 -12.59106 -12.22093 -11.96865 -11.82312 -11.65861 -11.57876 -11.38250 -11.29868 -11.02715 -10.71118 -10.68632 -10.40998 -9.59709 -9.13395 -8.23624 -6.25333 -0.01864 0.17517 1.37198 1.40537 1.54333 2.41699 2.44907 2.72740 3.13054 3.18082 3.49368 3.75207 3.83421 3.86657 4.03365 4.09473 4.20253 4.34764 4.35983 4.45358 4.50482 4.54806 4.57558 4.69248 4.78405 4.86589 4.91742 4.95620 5.00068 5.04588 5.04704 5.14140 5.19019 5.29353 5.33130 5.38020 5.45029 5.58991 5.65571 5.75382 5.83794 6.31405 6.38464 6.61779 6.69876 6.84202 6.91754 7.38981 8.93723 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.016159 B = 0.004243 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.345107 B = 6598.142563 C = 7900.751519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.091 3.909 3 H 0.068 0.932 4 C -0.085 4.085 5 C 0.004 3.996 6 C -0.528 4.528 7 H 0.026 0.974 8 C -0.001 4.001 9 N -0.958 5.958 10 Si 0.950 3.050 11 H -0.269 1.269 12 H -0.289 1.289 13 H -0.240 1.240 14 N -0.685 5.685 15 C 0.094 3.906 16 H 0.053 0.947 17 C -0.111 4.111 18 C -0.060 4.060 19 C 0.145 3.855 20 N -0.533 5.533 21 C 0.297 3.703 22 O -0.492 6.492 23 C -0.186 4.186 24 C -0.068 4.068 25 C -0.135 4.135 26 C -0.066 4.066 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.045 0.955 31 H 0.044 0.956 32 H 0.031 0.969 33 H 0.004 0.996 34 H 0.263 0.737 35 H 0.350 0.650 36 H 0.069 0.931 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.418 0.582 41 H 0.163 0.837 42 H 0.154 0.846 43 H 0.069 0.931 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.836 9.374 -22.441 25.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.019 4.019 3 H 0.086 0.914 4 C -0.123 4.123 5 C -0.034 4.034 6 C -0.566 4.566 7 H 0.044 0.956 8 C -0.196 4.196 9 N -0.600 5.600 10 Si 0.774 3.226 11 H -0.195 1.195 12 H -0.215 1.215 13 H -0.163 1.163 14 N -0.317 5.317 15 C -0.016 4.016 16 H 0.071 0.929 17 C -0.149 4.149 18 C -0.098 4.098 19 C 0.010 3.990 20 N -0.252 5.252 21 C 0.116 3.884 22 O -0.302 6.302 23 C -0.207 4.207 24 C -0.093 4.093 25 C -0.138 4.138 26 C -0.105 4.105 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.050 0.950 33 H 0.023 0.977 34 H 0.072 0.928 35 H 0.170 0.830 36 H 0.088 0.912 37 H 0.114 0.886 38 H 0.112 0.888 39 H 0.110 0.890 40 H 0.279 0.721 41 H 0.180 0.820 42 H 0.171 0.829 43 H 0.088 0.912 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -6.914 9.633 -22.741 25.646 hybrid contribution 0.849 0.206 0.576 1.047 sum -6.065 9.839 -22.164 24.997 Atomic orbital electron populations 1.22403 0.95823 1.02482 1.02321 1.21540 0.93139 0.97193 0.89981 0.91373 1.21338 0.95958 0.99293 0.95718 1.19351 0.94529 0.94791 0.94697 1.21698 0.92472 1.33724 1.08712 0.95572 1.26040 1.00776 0.95943 0.96876 1.70100 1.15034 1.46064 1.28819 0.85648 0.77431 0.78482 0.81056 1.19457 1.21543 1.16311 1.60383 1.58546 1.09683 1.03070 1.21418 0.95723 0.94232 0.90243 0.92912 1.21707 1.03851 0.97328 0.92045 1.20379 0.95827 0.93339 1.00296 1.21086 0.96109 0.94911 0.86906 1.66974 1.20010 1.07872 1.30378 1.19250 0.91661 0.89582 0.87899 1.84736 1.65796 1.50128 1.29568 1.22273 1.01998 1.03111 0.93287 1.21856 0.95751 0.92970 0.98752 1.20622 0.98022 0.98412 0.96714 1.20401 0.99164 0.98182 0.92713 0.91975 0.92204 0.91736 0.93608 0.93758 0.95028 0.97735 0.92813 0.83000 0.91238 0.88627 0.88792 0.88968 0.72101 0.81969 0.82858 0.91198 0.90633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.71 9.15 71.98 0.66 -3.05 16 2 C 0.09 2.53 2.41 44.91 0.11 2.64 16 3 H 0.07 1.95 7.29 -2.39 -0.02 1.93 16 4 C -0.08 -3.20 4.83 30.60 0.15 -3.05 16 5 C 0.00 0.17 3.93 29.85 0.12 0.29 16 6 C -0.53 -31.05 9.66 25.60 0.25 -30.80 16 7 H 0.03 1.69 7.99 -2.91 -0.02 1.67 16 8 C 0.00 -0.05 5.47 84.65 0.46 0.41 16 9 N -0.96 -61.60 13.96 21.45 0.30 -61.30 16 10 Si 0.95 45.12 27.47 68.60 1.88 47.01 16 11 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 12 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 13 H -0.24 -10.50 6.54 99.48 0.65 -9.85 16 14 N -0.68 -17.26 5.52 -469.30 -2.59 -19.85 16 15 C 0.09 1.98 2.31 44.94 0.10 2.08 16 16 H 0.05 1.07 7.09 -2.39 -0.02 1.06 16 17 C -0.11 -1.89 5.35 30.61 0.16 -1.73 16 18 C -0.06 -1.05 5.91 29.76 0.18 -0.88 16 19 C 0.14 3.28 6.62 42.25 0.28 3.56 16 20 N -0.53 -13.14 10.21 -297.26 -3.03 -16.18 16 21 C 0.30 6.50 7.75 84.85 0.66 7.16 16 22 O -0.49 -8.87 13.56 -90.02 -1.22 -10.09 16 23 C -0.19 -3.52 10.06 22.41 0.23 -3.29 16 24 C -0.07 -1.39 9.74 22.52 0.22 -1.17 16 25 C -0.14 -3.07 5.74 -19.83 -0.11 -3.19 16 26 C -0.07 -1.59 5.15 29.71 0.15 -1.44 16 27 H 0.06 1.28 8.13 -2.39 -0.02 1.26 16 28 H 0.06 1.30 8.14 -2.39 -0.02 1.29 16 29 H 0.06 1.17 7.44 -2.39 -0.02 1.16 16 30 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.03 1.48 6.81 -2.39 -0.02 1.46 16 33 H 0.00 0.20 7.57 -2.39 -0.02 0.18 16 34 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 35 H 0.35 7.66 7.98 -89.70 -0.72 6.95 16 36 H 0.07 1.32 8.10 -2.39 -0.02 1.30 16 37 H 0.10 1.25 7.94 -2.39 -0.02 1.23 16 38 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.42 3.21 9.06 -74.05 -0.67 2.54 16 41 H 0.16 2.20 8.06 -2.91 -0.02 2.18 16 42 H 0.15 2.65 8.06 -2.91 -0.02 2.63 16 43 H 0.07 1.77 7.63 -2.39 -0.02 1.75 16 44 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -73.59 351.87 -1.50 -75.09 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: -0.44 Total: 17.78 kcal Atomic # 6 Polarization: -36.06 SS G_CDS: 3.61 Total: -32.45 kcal Atomic # 7 Polarization: -92.01 SS G_CDS: -5.33 Total: -97.33 kcal Atomic # 8 Polarization: -8.87 SS G_CDS: -1.22 Total: -10.09 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 1.88 Total: 47.01 kcal Total: -73.59 -1.50 -75.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172479660.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.357 kcal (2) G-P(sol) polarization free energy of solvation -73.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds