Wall clock time and date at job start Tue Mar 31 2020 07:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.52997 * 109.47127 * 240.00426 * 2 1 3 5 5 C 1.53001 * 109.47049 * 174.99763 * 4 2 1 6 6 C 1.50703 * 109.47033 * 179.97438 * 5 4 2 7 7 H 1.07998 * 120.00117 * 0.02562 * 6 5 4 8 8 C 1.37870 * 119.99962 * 179.97438 * 6 5 4 9 9 N 1.31512 * 120.00182 * 0.02562 * 8 6 5 10 10 Si 1.86806 * 120.00189 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.46745 * 0.02562 * 10 8 6 12 12 H 1.48497 * 109.47116 * 120.00016 * 10 8 6 13 13 H 1.48498 * 109.47491 * 240.00247 * 10 8 6 14 14 N 1.46899 * 109.47163 * 120.00236 * 2 1 3 15 15 C 1.46903 * 110.99807 * 275.00039 * 14 2 1 16 16 H 1.08997 * 109.46768 * 35.00227 * 15 14 2 17 17 C 1.53002 * 109.46765 * 155.00068 * 15 14 2 18 18 C 1.50696 * 109.47084 * 294.99786 * 17 15 14 19 19 C 1.38231 * 120.00080 * 269.72471 * 18 17 15 20 20 C 1.38233 * 119.99978 * 179.76534 * 19 18 17 21 21 C 1.38241 * 120.00071 * 0.51607 * 20 19 18 22 22 C 1.38239 * 119.99540 * 359.73696 * 21 20 19 23 23 C 1.38230 * 119.99731 * 90.00530 * 18 17 15 24 24 C 1.50704 * 109.47102 * 275.00156 * 15 14 2 25 25 N 1.34775 * 119.99622 * 180.02562 * 24 15 14 26 26 O 1.21278 * 119.99751 * 0.02562 * 24 15 14 27 27 H 1.09000 * 109.47050 * 299.99734 * 1 2 3 28 28 H 1.09001 * 109.46801 * 59.99846 * 1 2 3 29 29 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46934 * 294.99762 * 4 2 1 31 31 H 1.09006 * 109.47500 * 54.99635 * 4 2 1 32 32 H 1.08998 * 109.47252 * 299.99805 * 5 4 2 33 33 H 1.08998 * 109.47250 * 59.99881 * 5 4 2 34 34 H 0.97002 * 120.00223 * 179.97438 * 9 8 6 35 35 H 1.00901 * 110.99898 * 151.04719 * 14 2 1 36 36 H 1.09002 * 109.47270 * 55.00360 * 17 15 14 37 37 H 1.09001 * 109.46732 * 174.99958 * 17 15 14 38 38 H 1.08003 * 120.00208 * 0.02562 * 19 18 17 39 39 H 1.07996 * 120.00404 * 180.23270 * 20 19 18 40 40 H 1.07994 * 120.00077 * 179.72213 * 21 20 19 41 41 H 1.08000 * 119.99388 * 179.97438 * 22 21 20 42 42 H 1.07997 * 120.00533 * 359.97438 * 23 18 17 43 43 H 0.96992 * 120.00445 * 359.97438 * 25 24 15 44 44 H 0.96999 * 119.99313 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2493 5 6 3.5649 -0.6131 -1.3137 6 6 4.0673 -1.3240 -2.5439 7 1 3.3688 -1.8044 -3.2131 8 6 5.4184 -1.3602 -2.8157 9 7 6.2690 -0.7748 -2.0011 10 14 6.0413 -2.2419 -4.3402 11 1 4.8914 -2.8142 -5.0855 12 1 6.7635 -1.2782 -5.2091 13 1 6.9640 -3.3338 -3.9383 14 7 2.0197 -0.6925 1.1994 15 6 2.0825 0.2226 2.3469 16 1 1.2576 0.9328 2.2906 17 6 1.9771 -0.5798 3.6453 18 6 0.6191 -1.2282 3.7263 19 6 -0.4301 -0.5616 4.3309 20 6 -1.6769 -1.1544 4.4008 21 6 -1.8719 -2.4182 3.8757 22 6 -0.8212 -3.0869 3.2757 23 6 0.4243 -2.4919 3.2011 24 6 3.3912 0.9695 2.3227 25 7 3.6711 1.8698 3.2859 26 8 4.1924 0.7605 1.4366 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.7517 -1.7714 -1.2056 31 1 1.6054 -0.2616 -2.1370 32 1 3.8532 0.4371 -1.3574 33 1 3.9995 -1.0726 -0.4260 34 1 7.2196 -0.8005 -2.1921 35 1 2.9174 -1.1205 1.0286 36 1 2.7488 -1.3495 3.6605 37 1 2.1125 0.0873 4.4966 38 1 -0.2768 0.4240 4.7449 39 1 -2.4976 -0.6321 4.8698 40 1 -2.8449 -2.8832 3.9343 41 1 -0.9735 -4.0745 2.8658 42 1 1.2450 -3.0145 2.7324 43 1 3.0301 2.0372 3.9943 44 1 4.5132 2.3508 3.2701 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172479889.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:54:45 Heat of formation + Delta-G solvation = -32.893542 kcal Electronic energy + Delta-G solvation = -23602.944254 eV Core-core repulsion = 20326.080584 eV Total energy + Delta-G solvation = -3276.863670 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.95263 -38.87826 -36.59843 -34.33269 -33.23830 -32.60280 -30.82228 -30.69794 -29.13991 -27.42229 -24.98408 -24.08371 -22.47731 -21.37824 -21.09093 -19.86955 -19.45205 -17.61852 -16.72486 -16.58698 -16.10250 -15.38548 -15.17267 -14.76648 -14.53536 -14.36568 -14.21249 -13.59123 -13.35481 -13.06810 -12.82196 -12.64042 -12.39137 -12.35913 -11.91851 -11.65989 -11.34349 -11.25382 -11.05472 -10.96800 -10.86325 -10.82687 -10.37435 -10.17297 -9.80112 -9.56975 -9.45636 -9.08649 -8.82427 -8.81555 -8.59177 -8.19720 -8.00302 -5.81563 -3.84871 1.42776 1.52008 2.90612 3.39257 3.46287 3.50713 3.68396 3.91551 4.45552 4.58100 4.77469 4.92100 5.04129 5.13302 5.17213 5.28010 5.33772 5.45654 5.51865 5.58567 5.62585 5.73981 5.82513 5.89520 6.00556 6.11683 6.16487 6.24508 6.45029 6.51919 6.59433 6.61369 6.63459 6.77304 6.95213 7.03247 7.10439 7.27151 7.38346 7.56647 7.83055 7.95371 8.09128 8.22798 8.51891 8.61591 9.24354 9.77699 11.28041 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.017774 B = 0.004256 C = 0.003774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.971666 B = 6577.118824 C = 7417.375790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.086 3.914 3 H 0.037 0.963 4 C -0.113 4.113 5 C 0.029 3.971 6 C -0.520 4.520 7 H 0.052 0.948 8 C 0.057 3.943 9 N -0.887 5.887 10 Si 0.885 3.115 11 H -0.274 1.274 12 H -0.286 1.286 13 H -0.285 1.285 14 N -0.655 5.655 15 C 0.076 3.924 16 H 0.098 0.902 17 C -0.066 4.066 18 C -0.062 4.062 19 C -0.123 4.123 20 C -0.127 4.127 21 C -0.128 4.128 22 C -0.122 4.122 23 C -0.083 4.083 24 C 0.471 3.529 25 N -0.863 5.863 26 O -0.499 6.499 27 H 0.041 0.959 28 H 0.049 0.951 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.050 0.950 32 H 0.013 0.987 33 H 0.023 0.977 34 H 0.256 0.744 35 H 0.363 0.637 36 H 0.079 0.921 37 H 0.073 0.927 38 H 0.115 0.885 39 H 0.115 0.885 40 H 0.114 0.886 41 H 0.117 0.883 42 H 0.126 0.874 43 H 0.395 0.605 44 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.351 2.484 17.224 22.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.024 4.024 3 H 0.055 0.945 4 C -0.151 4.151 5 C -0.009 4.009 6 C -0.559 4.559 7 H 0.070 0.930 8 C -0.144 4.144 9 N -0.526 5.526 10 Si 0.714 3.286 11 H -0.198 1.198 12 H -0.212 1.212 13 H -0.212 1.212 14 N -0.291 5.291 15 C -0.039 4.039 16 H 0.116 0.884 17 C -0.104 4.104 18 C -0.062 4.062 19 C -0.142 4.142 20 C -0.145 4.145 21 C -0.146 4.146 22 C -0.140 4.140 23 C -0.101 4.101 24 C 0.253 3.747 25 N -0.428 5.428 26 O -0.371 6.371 27 H 0.060 0.940 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.032 0.968 33 H 0.041 0.959 34 H 0.066 0.934 35 H 0.188 0.812 36 H 0.098 0.902 37 H 0.091 0.909 38 H 0.133 0.867 39 H 0.133 0.867 40 H 0.132 0.868 41 H 0.136 0.864 42 H 0.144 0.856 43 H 0.222 0.778 44 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -14.365 1.955 16.700 22.115 hybrid contribution 1.236 0.519 -0.743 1.533 sum -13.129 2.474 15.957 20.812 Atomic orbital electron populations 1.21798 0.95837 1.01698 0.99876 1.21573 0.93886 0.96288 0.90615 0.94517 1.21817 1.00338 0.99001 0.93930 1.19047 0.88016 0.97108 0.96690 1.21324 0.91880 1.34193 1.08496 0.92964 1.25023 0.97193 0.95754 0.96425 1.70042 1.02010 1.43909 1.36615 0.86649 0.78830 0.79527 0.83642 1.19846 1.21226 1.21153 1.60924 1.35034 1.29328 1.03784 1.21700 0.93944 0.94326 0.93955 0.88412 1.20556 0.95109 0.99488 0.95238 1.19567 0.94720 0.94527 0.97346 1.20965 0.92988 0.99585 1.00617 1.21005 0.96940 0.95716 1.00806 1.21069 0.98726 0.95384 0.99458 1.21154 0.93303 1.00009 0.99547 1.21069 0.97329 0.94726 0.96961 1.22097 0.90507 0.80313 0.81777 1.44012 1.23680 1.45060 1.30073 1.91019 1.48497 1.63417 1.34150 0.94034 0.93214 0.92361 0.92745 0.93106 0.96835 0.95931 0.93399 0.81232 0.90207 0.90871 0.86689 0.86738 0.86780 0.86448 0.85645 0.77780 0.77335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.02 9.40 37.16 0.35 -1.67 16 2 C 0.09 1.55 2.29 -67.71 -0.15 1.39 16 3 H 0.04 0.72 7.64 -51.93 -0.40 0.32 16 4 C -0.11 -2.46 4.74 -26.73 -0.13 -2.59 16 5 C 0.03 0.78 4.44 -27.88 -0.12 0.66 16 6 C -0.52 -15.52 9.11 -34.44 -0.31 -15.83 16 7 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 8 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 9 N -0.89 -28.18 13.29 55.43 0.74 -27.45 16 10 Si 0.89 22.62 29.54 -169.99 -5.02 17.60 16 11 H -0.27 -6.83 7.11 56.52 0.40 -6.42 16 12 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 13 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 14 N -0.66 -10.81 5.29 -100.95 -0.53 -11.34 16 15 C 0.08 1.01 2.20 -68.86 -0.15 0.85 16 16 H 0.10 1.20 7.11 -51.93 -0.37 0.83 16 17 C -0.07 -0.70 4.97 -27.88 -0.14 -0.84 16 18 C -0.06 -0.69 4.95 -104.63 -0.52 -1.20 16 19 C -0.12 -1.23 9.70 -39.59 -0.38 -1.61 16 20 C -0.13 -1.23 10.05 -39.58 -0.40 -1.63 16 21 C -0.13 -1.30 10.05 -39.58 -0.40 -1.70 16 22 C -0.12 -1.35 10.05 -39.58 -0.40 -1.75 16 23 C -0.08 -1.00 9.31 -39.59 -0.37 -1.37 16 24 C 0.47 7.21 7.13 -10.98 -0.08 7.13 16 25 N -0.86 -8.93 8.73 31.22 0.27 -8.65 16 26 O -0.50 -10.87 15.73 5.56 0.09 -10.78 16 27 H 0.04 0.57 7.43 -51.93 -0.39 0.18 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 32 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.02 0.65 6.04 -51.93 -0.31 0.34 16 34 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 35 H 0.36 7.21 5.49 -39.29 -0.22 6.99 16 36 H 0.08 0.94 8.09 -51.93 -0.42 0.52 16 37 H 0.07 0.58 7.37 -51.93 -0.38 0.20 16 38 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 39 H 0.11 0.88 8.06 -52.49 -0.42 0.45 16 40 H 0.11 0.93 8.06 -52.49 -0.42 0.51 16 41 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 42 H 0.13 1.58 8.06 -52.49 -0.42 1.16 16 43 H 0.39 2.59 8.19 -40.82 -0.33 2.26 16 44 H 0.40 4.00 8.93 -40.82 -0.36 3.64 16 LS Contribution 361.06 15.07 5.44 5.44 Total: -1.00 -35.29 361.06 -9.27 -44.56 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: -6.95 Total: 9.16 kcal Atomic # 6 Polarization: -15.24 SS G_CDS: -3.30 Total: -18.54 kcal Atomic # 7 Polarization: -47.92 SS G_CDS: 0.48 Total: -47.44 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: 0.09 Total: -10.78 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -35.29 -9.27 -44.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172479889.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.668 kcal (2) G-P(sol) polarization free energy of solvation -35.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds