Wall clock time and date at job start Tue Mar 31 2020 07:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.52997 * 109.47127 * 240.00426 * 2 1 3 5 5 C 1.53001 * 109.47049 * 174.99763 * 4 2 1 6 6 C 1.50703 * 109.47033 * 179.97438 * 5 4 2 7 7 H 1.07998 * 120.00117 * 0.02562 * 6 5 4 8 8 C 1.37870 * 119.99962 * 179.97438 * 6 5 4 9 9 N 1.31512 * 120.00182 * 0.02562 * 8 6 5 10 10 Si 1.86806 * 120.00189 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.46745 * 0.02562 * 10 8 6 12 12 H 1.48497 * 109.47116 * 120.00016 * 10 8 6 13 13 H 1.48498 * 109.47491 * 240.00247 * 10 8 6 14 14 N 1.46899 * 109.47163 * 120.00236 * 2 1 3 15 15 C 1.46903 * 110.99807 * 275.00039 * 14 2 1 16 16 H 1.08997 * 109.46768 * 35.00227 * 15 14 2 17 17 C 1.53002 * 109.46765 * 155.00068 * 15 14 2 18 18 C 1.50696 * 109.47084 * 294.99786 * 17 15 14 19 19 C 1.38231 * 120.00080 * 269.72471 * 18 17 15 20 20 C 1.38233 * 119.99978 * 179.76534 * 19 18 17 21 21 C 1.38241 * 120.00071 * 0.51607 * 20 19 18 22 22 C 1.38239 * 119.99540 * 359.73696 * 21 20 19 23 23 C 1.38230 * 119.99731 * 90.00530 * 18 17 15 24 24 C 1.50704 * 109.47102 * 275.00156 * 15 14 2 25 25 N 1.34775 * 119.99622 * 180.02562 * 24 15 14 26 26 O 1.21278 * 119.99751 * 0.02562 * 24 15 14 27 27 H 1.09000 * 109.47050 * 299.99734 * 1 2 3 28 28 H 1.09001 * 109.46801 * 59.99846 * 1 2 3 29 29 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46934 * 294.99762 * 4 2 1 31 31 H 1.09006 * 109.47500 * 54.99635 * 4 2 1 32 32 H 1.08998 * 109.47252 * 299.99805 * 5 4 2 33 33 H 1.08998 * 109.47250 * 59.99881 * 5 4 2 34 34 H 0.97002 * 120.00223 * 179.97438 * 9 8 6 35 35 H 1.00901 * 110.99898 * 151.04719 * 14 2 1 36 36 H 1.09002 * 109.47270 * 55.00360 * 17 15 14 37 37 H 1.09001 * 109.46732 * 174.99958 * 17 15 14 38 38 H 1.08003 * 120.00208 * 0.02562 * 19 18 17 39 39 H 1.07996 * 120.00404 * 180.23270 * 20 19 18 40 40 H 1.07994 * 120.00077 * 179.72213 * 21 20 19 41 41 H 1.08000 * 119.99388 * 179.97438 * 22 21 20 42 42 H 1.07997 * 120.00533 * 359.97438 * 23 18 17 43 43 H 0.96992 * 120.00445 * 359.97438 * 25 24 15 44 44 H 0.96999 * 119.99313 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2493 5 6 3.5649 -0.6131 -1.3137 6 6 4.0673 -1.3240 -2.5439 7 1 3.3688 -1.8044 -3.2131 8 6 5.4184 -1.3602 -2.8157 9 7 6.2690 -0.7748 -2.0011 10 14 6.0413 -2.2419 -4.3402 11 1 4.8914 -2.8142 -5.0855 12 1 6.7635 -1.2782 -5.2091 13 1 6.9640 -3.3338 -3.9383 14 7 2.0197 -0.6925 1.1994 15 6 2.0825 0.2226 2.3469 16 1 1.2576 0.9328 2.2906 17 6 1.9771 -0.5798 3.6453 18 6 0.6191 -1.2282 3.7263 19 6 -0.4301 -0.5616 4.3309 20 6 -1.6769 -1.1544 4.4008 21 6 -1.8719 -2.4182 3.8757 22 6 -0.8212 -3.0869 3.2757 23 6 0.4243 -2.4919 3.2011 24 6 3.3912 0.9695 2.3227 25 7 3.6711 1.8698 3.2859 26 8 4.1924 0.7605 1.4366 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.7517 -1.7714 -1.2056 31 1 1.6054 -0.2616 -2.1370 32 1 3.8532 0.4371 -1.3574 33 1 3.9995 -1.0726 -0.4260 34 1 7.2196 -0.8005 -2.1921 35 1 2.9174 -1.1205 1.0286 36 1 2.7488 -1.3495 3.6605 37 1 2.1125 0.0873 4.4966 38 1 -0.2768 0.4240 4.7449 39 1 -2.4976 -0.6321 4.8698 40 1 -2.8449 -2.8832 3.9343 41 1 -0.9735 -4.0745 2.8658 42 1 1.2450 -3.0145 2.7324 43 1 3.0301 2.0372 3.9943 44 1 4.5132 2.3508 3.2701 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172479889.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:54:44 Heat of formation + Delta-G solvation = -58.124817 kcal Electronic energy + Delta-G solvation = -23604.038364 eV Core-core repulsion = 20326.080584 eV Total energy + Delta-G solvation = -3277.957780 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.11971 -39.77400 -38.06495 -35.70436 -34.88177 -34.07480 -32.13546 -31.55719 -30.79362 -28.48168 -26.96878 -25.19404 -23.32909 -23.19301 -22.00458 -21.07033 -20.99894 -18.81754 -18.33076 -17.79303 -17.44540 -16.57588 -16.53941 -16.15548 -15.80241 -15.61802 -15.50143 -14.79380 -14.55612 -14.30145 -14.20309 -14.02597 -13.70985 -13.57007 -13.24358 -13.12650 -12.98148 -12.86087 -12.44629 -12.37813 -12.23503 -11.88408 -11.83114 -11.65449 -11.62423 -11.24491 -11.05516 -10.85534 -10.58691 -10.51796 -9.62312 -9.45998 -9.30184 -8.13984 -6.27578 0.63352 0.72871 1.36552 1.37952 1.51354 1.70353 2.41255 2.64956 3.09112 3.15614 3.22420 3.87700 4.05901 4.11615 4.18206 4.23353 4.34527 4.37882 4.42883 4.48819 4.49480 4.64656 4.79911 4.82042 4.94542 4.97631 5.03593 5.07344 5.10106 5.29993 5.34041 5.38005 5.47548 5.56573 5.75795 5.79004 5.82756 5.91873 5.95427 5.97949 6.15733 6.29832 6.33433 6.34526 6.56215 6.92643 7.40983 7.45307 8.96254 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.017774 B = 0.004256 C = 0.003774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.971666 B = 6577.118824 C = 7417.375790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.094 3.906 3 H 0.017 0.983 4 C -0.102 4.102 5 C 0.046 3.954 6 C -0.546 4.546 7 H 0.057 0.943 8 C -0.002 4.002 9 N -0.928 5.928 10 Si 0.964 3.036 11 H -0.260 1.260 12 H -0.279 1.279 13 H -0.277 1.277 14 N -0.651 5.651 15 C 0.080 3.920 16 H 0.119 0.881 17 C -0.057 4.057 18 C -0.072 4.072 19 C -0.122 4.122 20 C -0.129 4.129 21 C -0.133 4.133 22 C -0.136 4.136 23 C -0.105 4.105 24 C 0.469 3.531 25 N -0.835 5.835 26 O -0.575 6.575 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.051 0.949 32 H -0.029 1.029 33 H -0.002 1.002 34 H 0.259 0.741 35 H 0.341 0.659 36 H 0.062 0.938 37 H 0.109 0.891 38 H 0.143 0.857 39 H 0.140 0.860 40 H 0.133 0.867 41 H 0.122 0.878 42 H 0.106 0.894 43 H 0.418 0.582 44 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.594 2.903 18.305 24.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.016 4.016 3 H 0.035 0.965 4 C -0.140 4.140 5 C 0.008 3.992 6 C -0.584 4.584 7 H 0.076 0.924 8 C -0.200 4.200 9 N -0.568 5.568 10 Si 0.789 3.211 11 H -0.184 1.184 12 H -0.205 1.205 13 H -0.203 1.203 14 N -0.283 5.283 15 C -0.035 4.035 16 H 0.136 0.864 17 C -0.095 4.095 18 C -0.072 4.072 19 C -0.140 4.140 20 C -0.147 4.147 21 C -0.151 4.151 22 C -0.154 4.154 23 C -0.123 4.123 24 C 0.253 3.747 25 N -0.401 5.401 26 O -0.453 6.453 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.070 0.930 32 H -0.011 1.011 33 H 0.016 0.984 34 H 0.068 0.932 35 H 0.162 0.838 36 H 0.081 0.919 37 H 0.127 0.873 38 H 0.161 0.839 39 H 0.158 0.842 40 H 0.151 0.849 41 H 0.140 0.860 42 H 0.124 0.876 43 H 0.249 0.751 44 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -16.666 2.410 17.851 24.540 hybrid contribution 1.916 0.432 -0.970 2.191 sum -14.750 2.842 16.880 22.596 Atomic orbital electron populations 1.21667 0.92707 1.02102 1.01371 1.21444 0.96044 0.94485 0.89622 0.96526 1.21642 0.96428 0.99652 0.96310 1.18784 0.91699 0.93700 0.94986 1.21799 0.92617 1.34583 1.09440 0.92434 1.26026 0.97399 0.96448 1.00101 1.70216 1.02423 1.45268 1.38878 0.85420 0.78446 0.78242 0.79030 1.18434 1.20469 1.20303 1.61018 1.33373 1.29889 1.04060 1.21852 0.93346 0.94380 0.93875 0.86381 1.20527 0.94822 0.99375 0.94762 1.19595 0.95149 0.94345 0.98075 1.21276 0.92451 1.00563 0.99710 1.21370 0.97671 0.95516 1.00142 1.21361 0.99150 0.95775 0.98803 1.21307 0.93389 1.00560 1.00168 1.21081 0.97394 0.95688 0.98116 1.22447 0.90447 0.80494 0.81355 1.43755 1.24194 1.42978 1.29138 1.91008 1.50877 1.66004 1.37373 0.91878 0.92348 0.92429 0.92658 0.93000 1.01101 0.98394 0.93210 0.83783 0.91896 0.87261 0.83883 0.84224 0.84925 0.86008 0.87573 0.75055 0.76848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.43 9.40 71.98 0.68 -2.75 16 2 C 0.09 3.44 2.29 44.92 0.10 3.54 16 3 H 0.02 0.67 7.64 -2.39 -0.02 0.66 16 4 C -0.10 -4.63 4.74 30.59 0.15 -4.49 16 5 C 0.05 2.64 4.44 29.85 0.13 2.77 16 6 C -0.55 -33.67 9.11 25.60 0.23 -33.43 16 7 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 8 C 0.00 -0.13 5.46 84.65 0.46 0.33 16 9 N -0.93 -61.24 13.29 21.44 0.28 -60.96 16 10 Si 0.96 47.24 29.54 68.60 2.03 49.27 16 11 H -0.26 -12.09 7.11 99.48 0.71 -11.39 16 12 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16 13 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 14 N -0.65 -22.11 5.29 -473.29 -2.50 -24.62 16 15 C 0.08 2.07 2.20 44.17 0.10 2.17 16 16 H 0.12 2.59 7.11 -2.39 -0.02 2.58 16 17 C -0.06 -1.14 4.97 29.85 0.15 -0.99 16 18 C -0.07 -1.47 4.95 -19.87 -0.10 -1.56 16 19 C -0.12 -1.98 9.70 22.27 0.22 -1.77 16 20 C -0.13 -2.05 10.05 22.27 0.22 -1.83 16 21 C -0.13 -2.37 10.05 22.27 0.22 -2.15 16 22 C -0.14 -2.90 10.05 22.27 0.22 -2.68 16 23 C -0.10 -2.50 9.31 22.27 0.21 -2.30 16 24 C 0.47 14.56 7.13 87.66 0.62 15.18 16 25 N -0.84 -16.19 8.73 -173.53 -1.52 -17.71 16 26 O -0.57 -26.69 15.73 -3.02 -0.05 -26.74 16 27 H 0.06 1.53 7.43 -2.39 -0.02 1.51 16 28 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.05 2.46 8.14 -2.39 -0.02 2.44 16 31 H 0.05 2.29 8.14 -2.38 -0.02 2.27 16 32 H -0.03 -1.94 8.14 -2.39 -0.02 -1.96 16 33 H 0.00 -0.14 6.04 -2.39 -0.01 -0.15 16 34 H 0.26 16.03 8.31 -92.71 -0.77 15.26 16 35 H 0.34 14.52 5.49 -89.69 -0.49 14.03 16 36 H 0.06 1.49 8.09 -2.39 -0.02 1.47 16 37 H 0.11 1.36 7.37 -2.39 -0.02 1.34 16 38 H 0.14 1.48 8.06 -2.91 -0.02 1.46 16 39 H 0.14 1.50 8.06 -2.91 -0.02 1.47 16 40 H 0.13 1.80 8.06 -2.91 -0.02 1.77 16 41 H 0.12 2.34 8.06 -2.91 -0.02 2.32 16 42 H 0.11 2.85 8.06 -2.91 -0.02 2.83 16 43 H 0.42 4.20 8.19 -92.71 -0.76 3.44 16 44 H 0.40 7.76 8.93 -92.71 -0.83 6.93 16 Total: -1.00 -81.69 361.06 0.79 -80.90 By element: Atomic # 1 Polarization: 30.86 SS G_CDS: -1.07 Total: 29.79 kcal Atomic # 6 Polarization: -33.56 SS G_CDS: 3.62 Total: -29.94 kcal Atomic # 7 Polarization: -99.55 SS G_CDS: -3.73 Total: -103.28 kcal Atomic # 8 Polarization: -26.69 SS G_CDS: -0.05 Total: -26.74 kcal Atomic # 14 Polarization: 47.24 SS G_CDS: 2.03 Total: 49.27 kcal Total: -81.69 0.79 -80.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172479889.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.775 kcal (2) G-P(sol) polarization free energy of solvation -81.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds