Wall clock time and date at job start Tue Mar 31 2020 07:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.47021 * 2 1 4 4 C 1.53004 * 109.46993 * 240.00476 * 2 1 3 5 5 C 1.52996 * 109.47365 * 162.99106 * 4 2 1 6 6 C 1.50702 * 109.47137 * 185.63059 * 5 4 2 7 7 H 1.07998 * 119.99694 * 359.97438 * 6 5 4 8 8 C 1.37870 * 119.99754 * 180.02562 * 6 5 4 9 9 N 1.31521 * 120.00237 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99873 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47480 * 359.97438 * 10 8 6 12 12 H 1.48509 * 109.47460 * 119.99781 * 10 8 6 13 13 H 1.48507 * 109.47305 * 239.99715 * 10 8 6 14 14 N 1.46893 * 109.47338 * 120.00271 * 2 1 3 15 15 C 1.39856 * 110.96239 * 144.95370 * 14 2 1 16 16 C 1.39143 * 118.60505 * 284.83870 * 15 14 2 17 17 C 1.38062 * 120.24526 * 179.63631 * 16 15 14 18 18 C 1.38257 * 120.11395 * 0.02562 * 17 16 15 19 19 C 1.38180 * 120.02976 * 0.11106 * 18 17 16 20 20 C 1.38777 * 120.20175 * 359.97438 * 19 18 17 21 21 O 1.36143 * 118.74212 * 179.70023 * 20 19 18 22 22 C 1.43143 * 116.68068 * 165.11427 * 21 20 19 23 23 C 1.46761 * 110.99995 * 270.34820 * 14 2 1 24 24 H 1.09005 * 109.61490 * 165.78196 * 23 14 2 25 25 C 1.52991 * 109.61549 * 45.25045 * 23 14 2 26 26 N 1.46898 * 109.47730 * 66.03282 * 25 23 14 27 27 H 1.08998 * 109.46469 * 310.05821 * 1 2 3 28 28 H 1.08996 * 109.47004 * 70.05789 * 1 2 3 29 29 H 1.08995 * 109.46811 * 190.06425 * 1 2 3 30 30 H 1.09001 * 109.46574 * 282.99297 * 4 2 1 31 31 H 1.08996 * 109.47149 * 42.98668 * 4 2 1 32 32 H 1.08996 * 109.47072 * 305.62820 * 5 4 2 33 33 H 1.09003 * 109.46855 * 65.63080 * 5 4 2 34 34 H 0.97005 * 119.99561 * 180.02562 * 9 8 6 35 35 H 1.08000 * 119.87684 * 359.91075 * 16 15 14 36 36 H 1.08001 * 119.94526 * 180.02562 * 17 16 15 37 37 H 1.08000 * 119.98390 * 180.08963 * 18 17 16 38 38 H 1.07993 * 119.89655 * 179.97438 * 19 18 17 39 39 H 1.08997 * 109.77563 * 164.93903 * 22 21 20 40 40 H 1.08997 * 109.77032 * 285.67658 * 22 21 20 41 41 H 1.09005 * 109.47431 * 186.03115 * 25 23 14 42 42 H 1.08998 * 109.47335 * 306.02803 * 25 23 14 43 43 H 1.00890 * 111.00684 * 188.84045 * 26 25 23 44 44 H 1.00902 * 110.99761 * 312.80068 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5105 -0.3663 -1.4786 6 6 3.9742 -0.9640 -2.7820 7 1 3.2887 -1.5398 -3.3861 8 6 5.2738 -0.7767 -3.2025 9 7 6.1086 -0.0759 -2.4665 10 14 5.8484 -1.5169 -4.8185 11 1 4.7257 -2.2536 -5.4525 12 1 6.3044 -0.4328 -5.7252 13 1 6.9722 -2.4533 -4.5622 14 7 2.0198 -0.6925 1.1993 15 6 3.1946 -1.3996 0.9242 16 6 3.1039 -2.5893 0.2083 17 6 4.2429 -3.3108 -0.0886 18 6 5.4807 -2.8543 0.3249 19 6 5.5798 -1.6753 1.0387 20 6 4.4394 -0.9453 1.3426 21 8 4.5708 0.2089 2.0526 22 6 3.4421 1.0892 2.0630 23 6 2.1872 0.2447 2.3163 24 1 2.3031 -0.3116 3.2465 25 6 0.9631 1.1577 2.4086 26 7 -0.2158 0.3609 2.7737 27 1 -0.3632 0.6614 0.7866 28 1 -0.3633 0.3505 -0.9660 29 1 -0.3633 -1.0118 0.1796 30 1 1.9433 -1.7982 -1.1120 31 1 1.4524 -0.4109 -2.1133 32 1 3.6211 0.7174 -1.5161 33 1 4.1121 -0.7649 -0.6616 34 1 7.0229 0.0562 -2.7627 35 1 2.1394 -2.9474 -0.1201 36 1 4.1670 -4.2335 -0.6449 37 1 6.3705 -3.4196 0.0902 38 1 6.5477 -1.3209 1.3610 39 1 3.5569 1.8268 2.8572 40 1 3.3594 1.5939 1.1004 41 1 1.1352 1.9206 3.1679 42 1 0.7935 1.6367 1.4443 43 1 -1.0595 0.9093 2.7012 44 1 -0.2771 -0.4734 2.2095 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172485095.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:45:06 Heat of formation + Delta-G solvation = 37.898833 kcal Electronic energy + Delta-G solvation = -25593.830607 eV Core-core repulsion = 22320.036725 eV Total energy + Delta-G solvation = -3273.793882 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 2.47 seconds Orbital eigenvalues (eV) -41.41234 -37.60889 -37.25616 -34.49464 -33.10295 -32.02885 -30.17762 -30.06113 -29.09534 -26.57233 -25.11944 -24.76406 -22.45352 -21.71414 -21.60094 -20.76635 -18.61000 -17.37673 -16.62088 -16.47363 -16.15253 -15.46450 -15.37018 -14.91017 -14.48512 -14.27647 -14.12559 -13.48883 -13.29026 -13.11603 -12.84466 -12.52776 -12.31026 -12.14055 -11.84551 -11.75252 -11.51953 -11.13185 -11.08074 -10.91628 -10.85844 -10.54949 -10.41667 -10.37867 -10.06688 -9.50022 -9.19360 -8.96826 -8.70479 -8.59603 -8.24211 -7.61028 -7.10138 -5.89127 -3.89090 2.07708 2.21354 3.32624 3.40915 3.44041 3.74697 3.92519 4.43027 4.51561 4.54236 4.90368 5.05329 5.12946 5.25506 5.37281 5.43496 5.46634 5.51799 5.57877 5.60223 5.71618 5.75074 5.89649 5.94849 6.06179 6.08316 6.15037 6.23964 6.34152 6.45958 6.64733 6.82167 6.88603 6.90937 7.09352 7.15218 7.24332 7.30996 7.46703 7.48034 7.58789 7.76321 7.95020 8.07755 8.11630 8.53087 9.15505 9.72008 11.21066 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.018996 B = 0.006674 C = 0.005973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.663221 B = 4194.376048 C = 4686.606327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.072 3.928 3 H 0.051 0.949 4 C -0.135 4.135 5 C -0.004 4.004 6 C -0.507 4.507 7 H 0.048 0.952 8 C 0.063 3.937 9 N -0.887 5.887 10 Si 0.879 3.121 11 H -0.275 1.275 12 H -0.287 1.287 13 H -0.285 1.285 14 N -0.477 5.477 15 C 0.046 3.954 16 C -0.069 4.069 17 C -0.125 4.125 18 C -0.085 4.085 19 C -0.117 4.117 20 C 0.091 3.909 21 O -0.310 6.310 22 C 0.029 3.971 23 C 0.047 3.953 24 H 0.102 0.898 25 C 0.064 3.936 26 N -0.848 5.848 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.077 0.923 31 H 0.051 0.949 32 H -0.003 1.003 33 H 0.060 0.940 34 H 0.256 0.744 35 H 0.123 0.877 36 H 0.116 0.884 37 H 0.117 0.883 38 H 0.119 0.881 39 H 0.105 0.895 40 H 0.067 0.933 41 H 0.075 0.925 42 H 0.044 0.956 43 H 0.336 0.664 44 H 0.357 0.643 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.674 -0.382 9.606 12.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.033 4.033 3 H 0.069 0.931 4 C -0.172 4.172 5 C -0.040 4.040 6 C -0.545 4.545 7 H 0.067 0.933 8 C -0.138 4.138 9 N -0.526 5.526 10 Si 0.708 3.292 11 H -0.200 1.200 12 H -0.214 1.214 13 H -0.211 1.211 14 N -0.195 5.195 15 C -0.050 4.050 16 C -0.088 4.088 17 C -0.144 4.144 18 C -0.103 4.103 19 C -0.136 4.136 20 C 0.044 3.956 21 O -0.224 6.224 22 C -0.049 4.049 23 C -0.062 4.062 24 H 0.120 0.880 25 C -0.067 4.067 26 N -0.383 5.383 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.095 0.905 31 H 0.070 0.930 32 H 0.015 0.985 33 H 0.078 0.922 34 H 0.065 0.935 35 H 0.141 0.859 36 H 0.134 0.866 37 H 0.135 0.865 38 H 0.137 0.863 39 H 0.123 0.877 40 H 0.085 0.915 41 H 0.093 0.907 42 H 0.062 0.938 43 H 0.149 0.851 44 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -8.390 -0.625 10.560 13.502 hybrid contribution 0.549 0.663 -2.505 2.649 sum -7.841 0.039 8.055 11.241 Atomic orbital electron populations 1.22453 0.95517 1.02102 1.01649 1.22012 0.94426 0.96708 0.90168 0.93064 1.22378 1.00728 1.00751 0.93324 1.19827 0.89394 0.95858 0.98960 1.21116 0.95748 1.32438 1.05222 0.93345 1.24899 0.96934 0.95469 0.96538 1.69990 1.05055 1.40209 1.37383 0.86740 0.78724 0.79047 0.84687 1.19986 1.21352 1.21107 1.59568 1.27348 1.26319 1.06307 1.18190 0.86896 0.96265 1.03654 1.20569 0.98472 0.92717 0.97064 1.20671 0.92351 1.00339 1.01023 1.20643 0.97334 0.95593 0.96762 1.20150 0.95967 0.95904 1.01621 1.18733 0.93266 0.86526 0.97065 1.86251 1.38910 1.29303 1.67942 1.23416 0.86328 0.92090 1.03087 1.22493 0.94142 0.93617 0.95906 0.87963 1.21912 0.89972 0.95084 0.99738 1.58773 1.04556 1.10934 1.63990 0.92426 0.92346 0.91802 0.90481 0.92991 0.98498 0.92190 0.93451 0.85949 0.86626 0.86527 0.86328 0.87732 0.91484 0.90659 0.93825 0.85108 0.82547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.07 7.57 37.16 0.28 -1.79 16 2 C 0.07 1.20 1.82 -67.71 -0.12 1.08 16 3 H 0.05 0.92 5.27 -51.93 -0.27 0.65 16 4 C -0.13 -2.74 4.17 -26.73 -0.11 -2.85 16 5 C 0.00 -0.10 4.01 -27.88 -0.11 -0.21 16 6 C -0.51 -14.06 9.11 -34.44 -0.31 -14.37 16 7 H 0.05 1.34 7.74 -52.49 -0.41 0.93 16 8 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 9 N -0.89 -26.20 13.29 55.43 0.74 -25.46 16 10 Si 0.88 21.69 29.54 -169.99 -5.02 16.67 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 13 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 14 N -0.48 -7.79 3.93 -155.84 -0.61 -8.40 16 15 C 0.05 0.88 3.27 -83.59 -0.27 0.60 16 16 C -0.07 -1.29 6.42 -39.31 -0.25 -1.54 16 17 C -0.13 -2.34 9.78 -39.64 -0.39 -2.73 16 18 C -0.08 -1.64 9.86 -39.60 -0.39 -2.03 16 19 C -0.12 -2.39 9.44 -39.40 -0.37 -2.77 16 20 C 0.09 1.85 5.07 -39.11 -0.20 1.65 16 21 O -0.31 -6.06 10.40 -20.20 -0.21 -6.27 16 22 C 0.03 0.46 6.33 37.35 0.24 0.69 16 23 C 0.05 0.69 2.60 -67.60 -0.18 0.51 16 24 H 0.10 1.56 8.14 -51.93 -0.42 1.14 16 25 C 0.06 0.74 5.38 -3.83 -0.02 0.72 16 26 N -0.85 -9.21 8.70 -10.37 -0.09 -9.30 16 27 H 0.06 0.64 3.68 -51.93 -0.19 0.45 16 28 H 0.06 0.75 7.94 -51.93 -0.41 0.34 16 29 H 0.06 0.80 7.85 -51.93 -0.41 0.40 16 30 H 0.08 1.54 4.21 -51.93 -0.22 1.32 16 31 H 0.05 1.06 7.88 -51.93 -0.41 0.65 16 32 H 0.00 -0.09 8.04 -51.93 -0.42 -0.51 16 33 H 0.06 1.49 2.29 -51.93 -0.12 1.38 16 34 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 35 H 0.12 2.12 6.56 -52.49 -0.34 1.77 16 36 H 0.12 1.90 8.06 -52.49 -0.42 1.48 16 37 H 0.12 2.00 8.06 -52.49 -0.42 1.58 16 38 H 0.12 2.30 8.06 -52.49 -0.42 1.88 16 39 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 40 H 0.07 1.18 6.66 -51.93 -0.35 0.83 16 41 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.04 0.53 4.85 -51.93 -0.25 0.27 16 43 H 0.34 2.94 8.80 -39.30 -0.35 2.59 16 44 H 0.36 4.17 6.08 -39.29 -0.24 3.93 16 LS Contribution 322.21 15.07 4.86 4.86 Total: -1.00 -30.85 322.21 -8.70 -39.55 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: -6.05 Total: 9.70 kcal Atomic # 6 Polarization: -19.04 SS G_CDS: -2.31 Total: -21.35 kcal Atomic # 7 Polarization: -43.19 SS G_CDS: 0.03 Total: -43.16 kcal Atomic # 8 Polarization: -6.06 SS G_CDS: -0.21 Total: -6.27 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.85 -8.70 -39.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172485095.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.450 kcal (2) G-P(sol) polarization free energy of solvation -30.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.47 seconds