Wall clock time and date at job start Tue Mar 31 2020 07:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.47021 * 2 1 4 4 C 1.53004 * 109.46993 * 240.00476 * 2 1 3 5 5 C 1.52996 * 109.47365 * 162.99106 * 4 2 1 6 6 C 1.50702 * 109.47137 * 185.63059 * 5 4 2 7 7 H 1.07998 * 119.99694 * 359.97438 * 6 5 4 8 8 C 1.37870 * 119.99754 * 180.02562 * 6 5 4 9 9 N 1.31521 * 120.00237 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99873 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47480 * 359.97438 * 10 8 6 12 12 H 1.48509 * 109.47460 * 119.99781 * 10 8 6 13 13 H 1.48507 * 109.47305 * 239.99715 * 10 8 6 14 14 N 1.46893 * 109.47338 * 120.00271 * 2 1 3 15 15 C 1.39856 * 110.96239 * 144.95370 * 14 2 1 16 16 C 1.39143 * 118.60505 * 284.83870 * 15 14 2 17 17 C 1.38062 * 120.24526 * 179.63631 * 16 15 14 18 18 C 1.38257 * 120.11395 * 0.02562 * 17 16 15 19 19 C 1.38180 * 120.02976 * 0.11106 * 18 17 16 20 20 C 1.38777 * 120.20175 * 359.97438 * 19 18 17 21 21 O 1.36143 * 118.74212 * 179.70023 * 20 19 18 22 22 C 1.43143 * 116.68068 * 165.11427 * 21 20 19 23 23 C 1.46761 * 110.99995 * 270.34820 * 14 2 1 24 24 H 1.09005 * 109.61490 * 165.78196 * 23 14 2 25 25 C 1.52991 * 109.61549 * 45.25045 * 23 14 2 26 26 N 1.46898 * 109.47730 * 66.03282 * 25 23 14 27 27 H 1.08998 * 109.46469 * 310.05821 * 1 2 3 28 28 H 1.08996 * 109.47004 * 70.05789 * 1 2 3 29 29 H 1.08995 * 109.46811 * 190.06425 * 1 2 3 30 30 H 1.09001 * 109.46574 * 282.99297 * 4 2 1 31 31 H 1.08996 * 109.47149 * 42.98668 * 4 2 1 32 32 H 1.08996 * 109.47072 * 305.62820 * 5 4 2 33 33 H 1.09003 * 109.46855 * 65.63080 * 5 4 2 34 34 H 0.97005 * 119.99561 * 180.02562 * 9 8 6 35 35 H 1.08000 * 119.87684 * 359.91075 * 16 15 14 36 36 H 1.08001 * 119.94526 * 180.02562 * 17 16 15 37 37 H 1.08000 * 119.98390 * 180.08963 * 18 17 16 38 38 H 1.07993 * 119.89655 * 179.97438 * 19 18 17 39 39 H 1.08997 * 109.77563 * 164.93903 * 22 21 20 40 40 H 1.08997 * 109.77032 * 285.67658 * 22 21 20 41 41 H 1.09005 * 109.47431 * 186.03115 * 25 23 14 42 42 H 1.08998 * 109.47335 * 306.02803 * 25 23 14 43 43 H 1.00890 * 111.00684 * 188.84045 * 26 25 23 44 44 H 1.00902 * 110.99761 * 312.80068 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5105 -0.3663 -1.4786 6 6 3.9742 -0.9640 -2.7820 7 1 3.2887 -1.5398 -3.3861 8 6 5.2738 -0.7767 -3.2025 9 7 6.1086 -0.0759 -2.4665 10 14 5.8484 -1.5169 -4.8185 11 1 4.7257 -2.2536 -5.4525 12 1 6.3044 -0.4328 -5.7252 13 1 6.9722 -2.4533 -4.5622 14 7 2.0198 -0.6925 1.1993 15 6 3.1946 -1.3996 0.9242 16 6 3.1039 -2.5893 0.2083 17 6 4.2429 -3.3108 -0.0886 18 6 5.4807 -2.8543 0.3249 19 6 5.5798 -1.6753 1.0387 20 6 4.4394 -0.9453 1.3426 21 8 4.5708 0.2089 2.0526 22 6 3.4421 1.0892 2.0630 23 6 2.1872 0.2447 2.3163 24 1 2.3031 -0.3116 3.2465 25 6 0.9631 1.1577 2.4086 26 7 -0.2158 0.3609 2.7737 27 1 -0.3632 0.6614 0.7866 28 1 -0.3633 0.3505 -0.9660 29 1 -0.3633 -1.0118 0.1796 30 1 1.9433 -1.7982 -1.1120 31 1 1.4524 -0.4109 -2.1133 32 1 3.6211 0.7174 -1.5161 33 1 4.1121 -0.7649 -0.6616 34 1 7.0229 0.0562 -2.7627 35 1 2.1394 -2.9474 -0.1201 36 1 4.1670 -4.2335 -0.6449 37 1 6.3705 -3.4196 0.0902 38 1 6.5477 -1.3209 1.3610 39 1 3.5569 1.8268 2.8572 40 1 3.3594 1.5939 1.1004 41 1 1.1352 1.9206 3.1679 42 1 0.7935 1.6367 1.4443 43 1 -1.0595 0.9093 2.7012 44 1 -0.2771 -0.4734 2.2095 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172485095.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:44:55 Heat of formation + Delta-G solvation = 16.984335 kcal Electronic energy + Delta-G solvation = -25594.737527 eV Core-core repulsion = 22320.036725 eV Total energy + Delta-G solvation = -3274.700802 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 8.47 seconds Orbital eigenvalues (eV) -42.80811 -38.92043 -38.73175 -35.87114 -34.84311 -33.56977 -31.60067 -31.46415 -30.74561 -27.90549 -26.94432 -25.96709 -23.99661 -23.08384 -22.96429 -22.50812 -19.95743 -18.83323 -18.32390 -17.89318 -17.76446 -16.87258 -16.53439 -16.48992 -16.10406 -15.74681 -15.49104 -14.75348 -14.70407 -14.46728 -14.35103 -14.10065 -13.84081 -13.42432 -13.35096 -13.16863 -12.87661 -12.87031 -12.68703 -12.42685 -12.41724 -12.21857 -11.83595 -11.80838 -11.73911 -11.23207 -11.03858 -10.89663 -10.42642 -10.07154 -9.47427 -9.10900 -8.61246 -8.06011 -6.13001 0.57521 0.68844 1.37064 1.39415 1.49714 2.38067 2.44869 2.60579 3.06326 3.26594 3.35205 3.73005 3.90257 3.91627 4.00618 4.11152 4.19536 4.29434 4.36741 4.37252 4.40081 4.52487 4.60249 4.64900 4.71225 4.78796 4.85636 4.89680 5.00884 5.03774 5.17123 5.32534 5.37767 5.40573 5.46334 5.61208 5.76216 5.80526 5.90487 6.05672 6.12483 6.15110 6.26308 6.38427 6.61089 6.68745 7.01683 7.51855 9.03459 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.018996 B = 0.006674 C = 0.005973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.663221 B = 4194.376048 C = 4686.606327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.079 3.921 3 H 0.035 0.965 4 C -0.129 4.129 5 C -0.001 4.001 6 C -0.519 4.519 7 H 0.047 0.953 8 C 0.014 3.986 9 N -0.919 5.919 10 Si 0.942 3.058 11 H -0.266 1.266 12 H -0.287 1.287 13 H -0.279 1.279 14 N -0.467 5.467 15 C 0.039 3.961 16 C -0.077 4.077 17 C -0.133 4.133 18 C -0.097 4.097 19 C -0.142 4.142 20 C 0.069 3.931 21 O -0.330 6.330 22 C 0.023 3.977 23 C 0.051 3.949 24 H 0.100 0.900 25 C 0.072 3.928 26 N -0.849 5.849 27 H 0.080 0.920 28 H 0.062 0.938 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.048 0.952 32 H -0.049 1.049 33 H 0.066 0.934 34 H 0.255 0.745 35 H 0.140 0.860 36 H 0.139 0.861 37 H 0.132 0.868 38 H 0.115 0.885 39 H 0.139 0.861 40 H 0.044 0.956 41 H 0.095 0.905 42 H 0.042 0.958 43 H 0.352 0.648 44 H 0.354 0.646 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.625 -0.914 9.745 14.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.026 4.026 3 H 0.053 0.947 4 C -0.166 4.166 5 C -0.037 4.037 6 C -0.558 4.558 7 H 0.066 0.934 8 C -0.184 4.184 9 N -0.560 5.560 10 Si 0.768 3.232 11 H -0.190 1.190 12 H -0.214 1.214 13 H -0.205 1.205 14 N -0.186 5.186 15 C -0.057 4.057 16 C -0.096 4.096 17 C -0.152 4.152 18 C -0.115 4.115 19 C -0.161 4.161 20 C 0.023 3.977 21 O -0.244 6.244 22 C -0.054 4.054 23 C -0.057 4.057 24 H 0.118 0.882 25 C -0.059 4.059 26 N -0.384 5.384 27 H 0.099 0.901 28 H 0.081 0.919 29 H 0.093 0.907 30 H 0.103 0.897 31 H 0.067 0.933 32 H -0.031 1.031 33 H 0.083 0.917 34 H 0.064 0.936 35 H 0.157 0.843 36 H 0.156 0.844 37 H 0.150 0.850 38 H 0.133 0.867 39 H 0.157 0.843 40 H 0.062 0.938 41 H 0.113 0.887 42 H 0.060 0.940 43 H 0.166 0.834 44 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -10.372 -1.151 10.702 14.948 hybrid contribution 1.183 0.873 -2.520 2.917 sum -9.189 -0.279 8.182 12.307 Atomic orbital electron populations 1.22386 0.92062 1.03471 1.02850 1.21914 0.96945 0.95118 0.88648 0.94675 1.22240 0.97502 1.01650 0.95182 1.19801 0.92935 0.92613 0.98401 1.21465 0.95905 1.32213 1.06173 0.93439 1.25641 0.97160 0.95882 0.99727 1.70127 1.05265 1.41486 1.39115 0.85752 0.78459 0.78275 0.80680 1.18995 1.21379 1.20489 1.59683 1.25864 1.26557 1.06451 1.18408 0.87362 0.96695 1.03228 1.20856 0.99267 0.92656 0.96863 1.21020 0.92113 1.01184 1.00859 1.20919 0.98473 0.95505 0.96629 1.20381 0.96211 0.96874 1.02668 1.18989 0.93957 0.87058 0.97743 1.86212 1.40874 1.29476 1.67831 1.23675 0.86258 0.92324 1.03157 1.22552 0.94909 0.93436 0.94844 0.88242 1.21858 0.88965 0.94679 1.00440 1.58741 1.04924 1.10953 1.63812 0.90127 0.91941 0.90724 0.89665 0.93346 1.03053 0.91659 0.93570 0.84289 0.84364 0.84999 0.86659 0.84298 0.93757 0.88667 0.93978 0.83364 0.82884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.50 7.57 71.98 0.54 -2.96 16 2 C 0.08 2.56 1.82 44.92 0.08 2.64 16 3 H 0.04 1.27 5.27 -2.39 -0.01 1.26 16 4 C -0.13 -5.18 4.17 30.59 0.13 -5.05 16 5 C 0.00 -0.06 4.01 29.85 0.12 0.06 16 6 C -0.52 -29.03 9.11 25.60 0.23 -28.80 16 7 H 0.05 2.61 7.74 -2.91 -0.02 2.58 16 8 C 0.01 0.80 5.46 84.65 0.46 1.26 16 9 N -0.92 -55.49 13.29 21.45 0.28 -55.21 16 10 Si 0.94 44.57 29.54 68.60 2.03 46.60 16 11 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 12 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 13 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 14 N -0.47 -14.76 3.93 -646.95 -2.54 -17.31 16 15 C 0.04 1.50 3.27 38.25 0.13 1.63 16 16 C -0.08 -2.84 6.42 22.45 0.14 -2.70 16 17 C -0.13 -4.91 9.78 22.23 0.22 -4.70 16 18 C -0.10 -3.78 9.86 22.26 0.22 -3.56 16 19 C -0.14 -6.01 9.44 22.38 0.21 -5.80 16 20 C 0.07 2.90 5.07 22.57 0.11 3.01 16 21 O -0.33 -13.21 10.40 -95.18 -0.99 -14.20 16 22 C 0.02 0.73 6.33 72.10 0.46 1.18 16 23 C 0.05 1.42 2.60 45.06 0.12 1.54 16 24 H 0.10 2.88 8.14 -2.38 -0.02 2.86 16 25 C 0.07 1.48 5.38 86.30 0.46 1.94 16 26 N -0.85 -15.62 8.70 -186.73 -1.62 -17.25 16 27 H 0.08 1.52 3.68 -2.39 -0.01 1.51 16 28 H 0.06 1.44 7.94 -2.39 -0.02 1.42 16 29 H 0.07 1.62 7.85 -2.39 -0.02 1.60 16 30 H 0.09 3.30 4.21 -2.39 -0.01 3.29 16 31 H 0.05 1.95 7.88 -2.39 -0.02 1.93 16 32 H -0.05 -2.93 8.04 -2.39 -0.02 -2.95 16 33 H 0.07 3.33 2.29 -2.39 -0.01 3.33 16 34 H 0.26 14.75 8.31 -92.70 -0.77 13.98 16 35 H 0.14 4.56 6.56 -2.91 -0.02 4.54 16 36 H 0.14 4.34 8.06 -2.91 -0.02 4.32 16 37 H 0.13 4.56 8.06 -2.91 -0.02 4.53 16 38 H 0.12 4.74 8.06 -2.91 -0.02 4.72 16 39 H 0.14 3.31 8.14 -2.39 -0.02 3.29 16 40 H 0.04 1.60 6.66 -2.39 -0.02 1.59 16 41 H 0.10 1.64 8.14 -2.38 -0.02 1.62 16 42 H 0.04 0.90 4.85 -2.39 -0.01 0.89 16 43 H 0.35 4.81 8.80 -89.70 -0.79 4.02 16 44 H 0.35 7.09 6.08 -89.69 -0.55 6.54 16 Total: -1.00 -67.67 322.21 0.50 -67.17 By element: Atomic # 1 Polarization: 30.80 SS G_CDS: -0.29 Total: 30.51 kcal Atomic # 6 Polarization: -43.95 SS G_CDS: 3.64 Total: -40.31 kcal Atomic # 7 Polarization: -85.88 SS G_CDS: -3.88 Total: -89.76 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: -0.99 Total: -14.20 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -67.67 0.50 -67.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172485095.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.153 kcal (2) G-P(sol) polarization free energy of solvation -67.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.47 seconds