Wall clock time and date at job start Tue Mar 31 2020 07:50:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.53002 * 109.47233 * 120.00174 * 2 1 3 5 5 C 1.52997 * 109.47469 * 184.99697 * 4 2 1 6 6 C 1.50699 * 109.47339 * 179.97438 * 5 4 2 7 7 H 1.07999 * 119.99742 * 359.97438 * 6 5 4 8 8 C 1.37874 * 119.99999 * 180.02562 * 6 5 4 9 9 N 1.31519 * 120.00224 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 120.00088 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.46928 * 59.99450 * 10 8 6 12 12 H 1.48497 * 109.47106 * 179.97438 * 10 8 6 13 13 H 1.48502 * 109.46687 * 299.99674 * 10 8 6 14 14 N 1.46499 * 109.46840 * 239.99674 * 2 1 3 15 15 C 1.40049 * 119.99767 * 85.00224 * 14 2 1 16 16 C 1.36772 * 120.39896 * 359.72500 * 15 14 2 17 17 C 1.40264 * 119.23826 * 179.78291 * 16 15 14 18 18 C 1.35215 * 120.04073 * 0.51349 * 17 16 15 19 19 N 1.36021 * 120.81969 * 359.70924 * 18 17 16 20 20 C 1.46506 * 119.61436 * 180.02562 * 19 18 17 21 21 C 1.53013 * 109.46771 * 270.01889 * 20 19 18 22 22 C 1.52995 * 117.49813 * 243.62067 * 21 20 19 23 23 C 1.52999 * 60.00123 * 252.51455 * 22 21 20 24 24 C 1.34668 * 120.76839 * 0.04201 * 19 18 17 25 25 O 1.22076 * 120.03753 * 179.97438 * 24 19 18 26 26 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 27 27 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 28 28 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.46873 * 304.99791 * 4 2 1 30 30 H 1.08997 * 109.47047 * 64.99480 * 4 2 1 31 31 H 1.08997 * 109.47151 * 300.00410 * 5 4 2 32 32 H 1.09006 * 109.46918 * 59.99351 * 5 4 2 33 33 H 0.96998 * 120.00384 * 179.97438 * 9 8 6 34 34 H 0.97002 * 120.00410 * 264.99761 * 14 2 1 35 35 H 1.07997 * 120.37950 * 359.97438 * 16 15 14 36 36 H 1.08000 * 119.97792 * 180.22017 * 17 16 15 37 37 H 1.08003 * 119.58681 * 179.72921 * 18 17 16 38 38 H 1.08990 * 109.47345 * 30.01771 * 20 19 18 39 39 H 1.08998 * 109.47162 * 150.02241 * 20 19 18 40 40 H 1.08998 * 115.54667 * 29.33281 * 21 20 19 41 41 H 1.09000 * 117.49729 * 0.02562 * 22 21 20 42 42 H 1.09003 * 117.49581 * 145.01856 * 22 21 20 43 43 H 1.08996 * 117.49932 * 252.51196 * 23 22 21 44 44 H 1.08999 * 117.51415 * 107.48366 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.6134 1.3137 6 6 4.0671 -1.3233 2.5444 7 1 3.3685 -1.8031 3.2140 8 6 5.4183 -1.3595 2.8163 9 7 6.2690 -0.7748 2.0012 10 14 6.0410 -2.2400 4.3415 11 1 5.6486 -3.6710 4.2818 12 1 7.5209 -2.1352 4.4041 13 1 5.4484 -1.6143 5.5509 14 7 2.0183 -0.6907 -1.1961 15 6 2.1520 0.0080 -2.4025 16 6 1.8238 1.3338 -2.4746 17 6 1.9716 2.0109 -3.6940 18 6 2.4240 1.3511 -4.7841 19 7 2.7465 0.0314 -4.7160 20 6 3.2347 -0.6574 -5.9133 21 6 2.0497 -1.2460 -6.6818 22 6 1.9818 -2.7684 -6.8175 23 6 2.3408 -1.9076 -8.0303 24 6 2.6220 -0.6494 -3.5608 25 8 2.9149 -1.8336 -3.5148 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.6054 -0.2617 2.1370 30 1 1.7516 -1.7715 1.2056 31 1 3.9994 -1.0729 0.4260 32 1 3.8533 0.4369 1.3572 33 1 7.2195 -0.7999 2.1927 34 1 2.2490 -1.6319 -1.1526 35 1 1.4581 1.8541 -1.6017 36 1 1.7194 3.0587 -3.7635 37 1 2.5308 1.8785 -5.7205 38 1 3.7644 0.0514 -6.5497 39 1 3.9122 -1.4594 -5.6203 40 1 1.1080 -0.7070 -6.5785 41 1 2.7810 -3.3507 -6.3589 42 1 0.9951 -3.2314 -6.8032 43 1 1.5904 -1.8043 -8.8140 44 1 3.3764 -1.9233 -8.3701 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172488122.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:42 Heat of formation + Delta-G solvation = 12.154836 kcal Electronic energy + Delta-G solvation = -23015.817882 eV Core-core repulsion = 19740.907657 eV Total energy + Delta-G solvation = -3274.910225 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 2.31 seconds Orbital eigenvalues (eV) -41.16556 -37.96823 -37.01568 -36.58901 -34.07054 -32.78007 -31.16726 -29.31261 -28.00025 -27.64958 -25.10589 -23.40863 -22.66957 -22.44600 -21.44722 -20.85412 -19.82345 -17.81841 -17.34046 -16.24209 -16.16730 -15.90266 -15.77984 -14.75145 -14.72123 -14.45963 -14.22341 -14.13551 -13.20481 -13.08587 -12.92691 -12.61429 -12.26023 -12.17817 -12.01802 -11.90204 -11.71418 -11.50522 -11.47044 -11.23144 -10.89494 -10.80481 -10.59421 -10.44861 -10.25452 -10.19586 -9.84020 -9.67633 -9.30627 -9.03717 -8.68894 -8.30485 -6.63976 -5.95383 -3.98374 1.31803 2.15997 2.68546 3.35539 3.39913 3.42208 3.54223 3.90779 3.96621 4.47499 4.48736 4.61930 4.71188 4.83574 4.90723 5.06564 5.21381 5.35585 5.38189 5.40162 5.40593 5.45981 5.53555 5.60721 5.71927 5.72331 5.89231 5.96585 6.03035 6.10042 6.16443 6.29798 6.37799 6.49468 6.55100 6.78172 6.83319 7.09856 7.24968 7.64310 7.72167 7.87378 8.04774 8.15470 8.26873 8.45740 9.08842 9.65398 11.15525 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.017923 B = 0.003569 C = 0.003293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.826269 B = 7843.993338 C = 8499.557458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.147 3.853 3 H 0.076 0.924 4 C -0.119 4.119 5 C 0.024 3.976 6 C -0.523 4.523 7 H 0.053 0.947 8 C 0.057 3.943 9 N -0.893 5.893 10 Si 0.891 3.109 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.277 1.277 14 N -0.704 5.704 15 C 0.128 3.872 16 C -0.180 4.180 17 C -0.153 4.153 18 C 0.034 3.966 19 N -0.485 5.485 20 C 0.129 3.871 21 C -0.171 4.171 22 C -0.168 4.168 23 C -0.174 4.174 24 C 0.510 3.490 25 O -0.548 6.548 26 H 0.062 0.938 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.053 0.947 31 H 0.020 0.980 32 H 0.013 0.987 33 H 0.260 0.740 34 H 0.407 0.593 35 H 0.128 0.872 36 H 0.135 0.865 37 H 0.149 0.851 38 H 0.091 0.909 39 H 0.098 0.902 40 H 0.107 0.893 41 H 0.100 0.900 42 H 0.092 0.908 43 H 0.095 0.905 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.791 4.892 -18.779 22.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.042 3.958 3 H 0.094 0.906 4 C -0.157 4.157 5 C -0.013 4.013 6 C -0.562 4.562 7 H 0.072 0.928 8 C -0.144 4.144 9 N -0.532 5.532 10 Si 0.719 3.281 11 H -0.203 1.203 12 H -0.213 1.213 13 H -0.203 1.203 14 N -0.330 5.330 15 C 0.018 3.982 16 C -0.211 4.211 17 C -0.177 4.177 18 C -0.090 4.090 19 N -0.200 5.200 20 C 0.007 3.993 21 C -0.190 4.190 22 C -0.205 4.205 23 C -0.212 4.212 24 C 0.308 3.692 25 O -0.430 6.430 26 H 0.081 0.919 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.038 0.962 32 H 0.032 0.968 33 H 0.070 0.930 34 H 0.244 0.756 35 H 0.146 0.854 36 H 0.153 0.847 37 H 0.167 0.833 38 H 0.110 0.890 39 H 0.116 0.884 40 H 0.125 0.875 41 H 0.119 0.881 42 H 0.111 0.889 43 H 0.114 0.886 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -10.455 4.235 -18.610 21.761 hybrid contribution 0.504 -0.617 0.877 1.185 sum -9.951 3.618 -17.732 20.653 Atomic orbital electron populations 1.22276 0.96753 1.01959 1.01384 1.21157 0.92306 0.97251 0.85098 0.90635 1.21955 1.00715 0.99033 0.93998 1.19072 0.88054 0.97091 0.97083 1.21221 0.91979 1.34591 1.08375 0.92834 1.25024 0.97100 0.95627 0.96651 1.69965 1.02369 1.43980 1.36915 0.86678 0.77616 0.80268 0.83544 1.20278 1.21321 1.20280 1.44724 1.70014 1.12812 1.05497 1.18546 0.99509 0.92523 0.87586 1.20552 1.08889 0.92740 0.98892 1.20240 1.05444 1.00197 0.91817 1.21357 1.03514 0.83664 1.00432 1.44873 1.55090 1.09471 1.10549 1.21404 0.95346 0.98163 0.84346 1.22608 1.00163 0.96627 0.99641 1.23028 1.03415 0.92861 1.01176 1.22962 1.02674 1.04498 0.91044 1.16740 0.81940 0.87321 0.83170 1.90953 1.52758 1.14767 1.84555 0.91940 0.92968 0.92677 0.91777 0.92840 0.96176 0.96821 0.93009 0.75648 0.85402 0.84707 0.83334 0.89044 0.88399 0.87496 0.88143 0.88901 0.88649 0.88546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.29 9.43 37.16 0.35 -1.94 16 2 C 0.15 2.50 2.27 -67.93 -0.15 2.34 16 3 H 0.08 1.30 6.53 -51.93 -0.34 0.96 16 4 C -0.12 -2.41 4.69 -26.73 -0.13 -2.54 16 5 C 0.02 0.63 4.86 -27.89 -0.14 0.49 16 6 C -0.52 -15.09 9.11 -34.44 -0.31 -15.40 16 7 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 8 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 9 N -0.89 -27.60 13.29 55.43 0.74 -26.86 16 10 Si 0.89 22.15 29.54 -169.99 -5.02 17.13 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 12 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 13 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 14 N -0.70 -12.76 4.70 -51.99 -0.24 -13.00 16 15 C 0.13 2.18 6.67 -83.50 -0.56 1.63 16 16 C -0.18 -2.58 8.91 -39.35 -0.35 -2.93 16 17 C -0.15 -1.74 10.00 -39.90 -0.40 -2.14 16 18 C 0.03 0.36 10.28 -16.77 -0.17 0.19 16 19 N -0.49 -6.37 2.59 -119.49 -0.31 -6.68 16 20 C 0.13 1.37 5.62 -4.03 -0.02 1.35 16 21 C -0.17 -1.65 6.01 -90.62 -0.54 -2.19 16 22 C -0.17 -1.67 10.18 -26.73 -0.27 -1.94 16 23 C -0.17 -1.33 10.25 -26.73 -0.27 -1.60 16 24 C 0.51 8.79 7.43 -15.17 -0.11 8.68 16 25 O -0.55 -11.06 15.97 4.85 0.08 -10.98 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.05 0.67 7.71 -51.93 -0.40 0.27 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.06 1.24 8.14 -51.92 -0.42 0.82 16 30 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.02 0.57 7.75 -51.93 -0.40 0.17 16 32 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 34 H 0.41 8.01 8.06 -40.82 -0.33 7.68 16 35 H 0.13 1.74 6.14 -52.49 -0.32 1.42 16 36 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 37 H 0.15 1.01 8.04 -52.48 -0.42 0.59 16 38 H 0.09 0.70 8.01 -51.93 -0.42 0.28 16 39 H 0.10 1.22 7.12 -51.93 -0.37 0.85 16 40 H 0.11 1.05 8.14 -51.93 -0.42 0.62 16 41 H 0.10 1.11 8.03 -51.93 -0.42 0.69 16 42 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 43 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 363.37 15.07 5.48 5.48 Total: -1.00 -33.45 363.37 -9.65 -43.11 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -7.19 Total: 6.23 kcal Atomic # 6 Polarization: -11.23 SS G_CDS: -3.18 Total: -14.41 kcal Atomic # 7 Polarization: -46.72 SS G_CDS: 0.18 Total: -46.54 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: 0.08 Total: -10.98 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.45 -9.65 -43.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172488122.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.262 kcal (2) G-P(sol) polarization free energy of solvation -33.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.31 seconds