Wall clock time and date at job start Tue Mar 31 2020 07:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.53002 * 109.47233 * 120.00174 * 2 1 3 5 5 C 1.52997 * 109.47469 * 184.99697 * 4 2 1 6 6 C 1.50699 * 109.47339 * 179.97438 * 5 4 2 7 7 H 1.07999 * 119.99742 * 359.97438 * 6 5 4 8 8 C 1.37874 * 119.99999 * 180.02562 * 6 5 4 9 9 N 1.31519 * 120.00224 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 120.00088 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.46928 * 59.99450 * 10 8 6 12 12 H 1.48497 * 109.47106 * 179.97438 * 10 8 6 13 13 H 1.48502 * 109.46687 * 299.99674 * 10 8 6 14 14 N 1.46499 * 109.46840 * 239.99674 * 2 1 3 15 15 C 1.40049 * 119.99767 * 85.00224 * 14 2 1 16 16 C 1.36772 * 120.39896 * 359.72500 * 15 14 2 17 17 C 1.40264 * 119.23826 * 179.78291 * 16 15 14 18 18 C 1.35215 * 120.04073 * 0.51349 * 17 16 15 19 19 N 1.36021 * 120.81969 * 359.70924 * 18 17 16 20 20 C 1.46506 * 119.61436 * 180.02562 * 19 18 17 21 21 C 1.53013 * 109.46771 * 270.01889 * 20 19 18 22 22 C 1.52995 * 117.49813 * 243.62067 * 21 20 19 23 23 C 1.52999 * 60.00123 * 252.51455 * 22 21 20 24 24 C 1.34668 * 120.76839 * 0.04201 * 19 18 17 25 25 O 1.22076 * 120.03753 * 179.97438 * 24 19 18 26 26 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 27 27 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 28 28 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.46873 * 304.99791 * 4 2 1 30 30 H 1.08997 * 109.47047 * 64.99480 * 4 2 1 31 31 H 1.08997 * 109.47151 * 300.00410 * 5 4 2 32 32 H 1.09006 * 109.46918 * 59.99351 * 5 4 2 33 33 H 0.96998 * 120.00384 * 179.97438 * 9 8 6 34 34 H 0.97002 * 120.00410 * 264.99761 * 14 2 1 35 35 H 1.07997 * 120.37950 * 359.97438 * 16 15 14 36 36 H 1.08000 * 119.97792 * 180.22017 * 17 16 15 37 37 H 1.08003 * 119.58681 * 179.72921 * 18 17 16 38 38 H 1.08990 * 109.47345 * 30.01771 * 20 19 18 39 39 H 1.08998 * 109.47162 * 150.02241 * 20 19 18 40 40 H 1.08998 * 115.54667 * 29.33281 * 21 20 19 41 41 H 1.09000 * 117.49729 * 0.02562 * 22 21 20 42 42 H 1.09003 * 117.49581 * 145.01856 * 22 21 20 43 43 H 1.08996 * 117.49932 * 252.51196 * 23 22 21 44 44 H 1.08999 * 117.51415 * 107.48366 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.6134 1.3137 6 6 4.0671 -1.3233 2.5444 7 1 3.3685 -1.8031 3.2140 8 6 5.4183 -1.3595 2.8163 9 7 6.2690 -0.7748 2.0012 10 14 6.0410 -2.2400 4.3415 11 1 5.6486 -3.6710 4.2818 12 1 7.5209 -2.1352 4.4041 13 1 5.4484 -1.6143 5.5509 14 7 2.0183 -0.6907 -1.1961 15 6 2.1520 0.0080 -2.4025 16 6 1.8238 1.3338 -2.4746 17 6 1.9716 2.0109 -3.6940 18 6 2.4240 1.3511 -4.7841 19 7 2.7465 0.0314 -4.7160 20 6 3.2347 -0.6574 -5.9133 21 6 2.0497 -1.2460 -6.6818 22 6 1.9818 -2.7684 -6.8175 23 6 2.3408 -1.9076 -8.0303 24 6 2.6220 -0.6494 -3.5608 25 8 2.9149 -1.8336 -3.5148 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.6054 -0.2617 2.1370 30 1 1.7516 -1.7715 1.2056 31 1 3.9994 -1.0729 0.4260 32 1 3.8533 0.4369 1.3572 33 1 7.2195 -0.7999 2.1927 34 1 2.2490 -1.6319 -1.1526 35 1 1.4581 1.8541 -1.6017 36 1 1.7194 3.0587 -3.7635 37 1 2.5308 1.8785 -5.7205 38 1 3.7644 0.0514 -6.5497 39 1 3.9122 -1.4594 -5.6203 40 1 1.1080 -0.7070 -6.5785 41 1 2.7810 -3.3507 -6.3589 42 1 0.9951 -3.2314 -6.8032 43 1 1.5904 -1.8043 -8.8140 44 1 3.3764 -1.9233 -8.3701 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172488122.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:40 Heat of formation + Delta-G solvation = -7.677885 kcal Electronic energy + Delta-G solvation = -23016.677894 eV Core-core repulsion = 19740.907657 eV Total energy + Delta-G solvation = -3275.770237 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.27642 -39.04067 -38.13453 -37.72583 -35.67169 -34.50032 -32.56770 -30.97307 -29.13006 -28.60636 -27.02503 -24.57038 -23.72400 -23.29572 -23.08358 -21.83713 -21.19599 -18.96381 -18.58479 -18.29281 -17.33512 -16.91621 -16.85181 -16.55675 -15.99452 -15.65500 -15.20546 -15.14452 -14.71185 -14.51993 -14.35384 -13.96690 -13.79390 -13.28218 -13.15932 -13.09659 -12.92070 -12.84696 -12.76461 -12.51794 -12.42188 -12.37557 -12.02751 -11.82886 -11.55941 -11.42192 -11.25553 -11.04165 -10.97632 -10.88272 -10.57102 -9.83174 -8.21288 -7.82852 -6.33247 0.21701 1.05843 1.36250 1.40257 1.47926 1.66039 2.38609 2.65810 2.82666 2.86859 3.11363 3.66936 3.72060 3.90340 3.99032 4.00136 4.13468 4.27333 4.28549 4.30035 4.38750 4.47721 4.51026 4.63092 4.71313 4.77133 4.87320 4.94611 4.98295 5.00091 5.10055 5.19359 5.21516 5.23206 5.25189 5.39202 5.47929 5.50578 5.70594 5.84646 5.87006 6.15601 6.22244 6.48260 6.76180 6.85266 7.08306 7.36025 8.90124 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.017923 B = 0.003569 C = 0.003293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.826269 B = 7843.993338 C = 8499.557458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.156 3.844 3 H 0.071 0.929 4 C -0.107 4.107 5 C 0.034 3.966 6 C -0.546 4.546 7 H 0.061 0.939 8 C -0.003 4.003 9 N -0.934 5.934 10 Si 0.966 3.034 11 H -0.269 1.269 12 H -0.284 1.284 13 H -0.262 1.262 14 N -0.725 5.725 15 C 0.075 3.925 16 C -0.154 4.154 17 C -0.169 4.169 18 C 0.057 3.943 19 N -0.479 5.479 20 C 0.124 3.876 21 C -0.175 4.175 22 C -0.196 4.196 23 C -0.141 4.141 24 C 0.489 3.511 25 O -0.601 6.601 26 H 0.080 0.920 27 H 0.063 0.937 28 H 0.051 0.949 29 H 0.077 0.923 30 H 0.050 0.950 31 H -0.016 1.016 32 H -0.014 1.014 33 H 0.262 0.738 34 H 0.391 0.609 35 H 0.135 0.865 36 H 0.176 0.824 37 H 0.203 0.797 38 H 0.133 0.867 39 H 0.070 0.930 40 H 0.110 0.890 41 H 0.078 0.922 42 H 0.091 0.909 43 H 0.115 0.885 44 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.944 6.952 -20.166 24.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.051 3.949 3 H 0.089 0.911 4 C -0.145 4.145 5 C -0.004 4.004 6 C -0.584 4.584 7 H 0.080 0.920 8 C -0.201 4.201 9 N -0.574 5.574 10 Si 0.790 3.210 11 H -0.194 1.194 12 H -0.209 1.209 13 H -0.187 1.187 14 N -0.353 5.353 15 C -0.032 4.032 16 C -0.184 4.184 17 C -0.191 4.191 18 C -0.067 4.067 19 N -0.191 5.191 20 C 0.003 3.997 21 C -0.194 4.194 22 C -0.233 4.233 23 C -0.178 4.178 24 C 0.289 3.711 25 O -0.489 6.489 26 H 0.099 0.901 27 H 0.082 0.918 28 H 0.070 0.930 29 H 0.095 0.905 30 H 0.069 0.931 31 H 0.003 0.997 32 H 0.005 0.995 33 H 0.071 0.929 34 H 0.225 0.775 35 H 0.152 0.848 36 H 0.193 0.807 37 H 0.220 0.780 38 H 0.151 0.849 39 H 0.089 0.911 40 H 0.128 0.872 41 H 0.097 0.903 42 H 0.110 0.890 43 H 0.134 0.866 44 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -11.633 6.351 -20.044 24.029 hybrid contribution 0.886 -1.122 1.151 1.836 sum -10.747 5.229 -18.892 22.355 Atomic orbital electron populations 1.22155 0.93876 1.02244 1.02803 1.21022 0.94350 0.96098 0.83445 0.91065 1.21769 0.96455 0.99645 0.96612 1.18892 0.92105 0.94544 0.94812 1.21728 0.92661 1.34742 1.09256 0.92049 1.26033 0.97412 0.96394 1.00239 1.70122 1.02697 1.45488 1.39095 0.85493 0.77002 0.79106 0.79393 1.19437 1.20893 1.18684 1.44650 1.72147 1.12112 1.06348 1.18768 1.03159 0.93767 0.87471 1.20981 1.05366 0.91559 1.00487 1.20727 1.05787 1.02045 0.90582 1.22286 0.99838 0.82226 1.02368 1.45095 1.53347 1.10525 1.10131 1.21658 0.95720 0.98536 0.83818 1.22561 0.99804 0.95860 1.01161 1.23020 1.02851 0.93434 1.03996 1.23060 1.03991 1.00705 0.90074 1.16974 0.82499 0.87116 0.84486 1.90904 1.55738 1.16792 1.85451 0.90083 0.91793 0.92988 0.90494 0.93116 0.99718 0.99529 0.92927 0.77546 0.84767 0.80715 0.78035 0.84911 0.91125 0.87221 0.90337 0.89022 0.86629 0.87249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.09 9.43 71.98 0.68 -3.41 16 2 C 0.16 5.44 2.27 44.99 0.10 5.54 16 3 H 0.07 2.50 6.53 -2.39 -0.02 2.48 16 4 C -0.11 -4.48 4.69 30.59 0.14 -4.34 16 5 C 0.03 1.86 4.86 29.85 0.15 2.00 16 6 C -0.55 -32.39 9.11 25.60 0.23 -32.15 16 7 H 0.06 3.45 7.74 -2.91 -0.02 3.43 16 8 C 0.00 -0.20 5.46 84.65 0.46 0.27 16 9 N -0.93 -59.69 13.29 21.45 0.28 -59.41 16 10 Si 0.97 46.05 29.54 68.60 2.03 48.07 16 11 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 12 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 13 H -0.26 -11.80 7.11 99.48 0.71 -11.10 16 14 N -0.72 -28.10 4.70 -318.39 -1.50 -29.59 16 15 C 0.08 2.66 6.67 38.22 0.25 2.91 16 16 C -0.15 -4.23 8.91 22.42 0.20 -4.03 16 17 C -0.17 -3.23 10.00 22.07 0.22 -3.01 16 18 C 0.06 0.99 10.28 83.35 0.86 1.85 16 19 N -0.48 -12.07 2.59 -650.09 -1.68 -13.76 16 20 C 0.12 2.47 5.62 86.38 0.49 2.96 16 21 C -0.18 -3.12 6.01 -10.79 -0.06 -3.18 16 22 C -0.20 -4.00 10.18 30.59 0.31 -3.68 16 23 C -0.14 -1.82 10.25 30.59 0.31 -1.51 16 24 C 0.49 17.67 7.43 84.99 0.63 18.31 16 25 O -0.60 -26.57 15.97 -5.56 -0.09 -26.66 16 26 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 27 H 0.06 1.56 7.71 -2.39 -0.02 1.55 16 28 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.08 2.98 8.14 -2.38 -0.02 2.97 16 30 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 31 H -0.02 -0.97 7.75 -2.39 -0.02 -0.98 16 32 H -0.01 -0.82 8.14 -2.38 -0.02 -0.84 16 33 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 34 H 0.39 17.05 8.06 -92.71 -0.75 16.31 16 35 H 0.13 3.46 6.14 -2.91 -0.02 3.44 16 36 H 0.18 1.98 8.06 -2.91 -0.02 1.96 16 37 H 0.20 1.40 8.04 -2.91 -0.02 1.38 16 38 H 0.13 1.53 8.01 -2.39 -0.02 1.51 16 39 H 0.07 1.84 7.12 -2.39 -0.02 1.82 16 40 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.08 1.92 8.03 -2.39 -0.02 1.90 16 42 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 43 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -79.23 363.37 4.25 -74.99 By element: Atomic # 1 Polarization: 27.61 SS G_CDS: 0.23 Total: 27.85 kcal Atomic # 6 Polarization: -26.46 SS G_CDS: 4.97 Total: -21.48 kcal Atomic # 7 Polarization: -99.86 SS G_CDS: -2.90 Total: -102.76 kcal Atomic # 8 Polarization: -26.57 SS G_CDS: -0.09 Total: -26.66 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.07 kcal Total: -79.23 4.25 -74.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172488122.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.308 kcal (2) G-P(sol) polarization free energy of solvation -79.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds