Wall clock time and date at job start Tue Mar 31 2020 07:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 O 1.21288 * 119.99842 * 2 1 4 4 N 1.34774 * 119.99839 * 179.97438 * 2 1 3 5 5 C 1.39927 * 119.99556 * 185.27317 * 4 2 1 6 6 C 1.38871 * 120.06945 * 33.29223 * 5 4 2 7 7 C 1.38119 * 119.92279 * 180.02562 * 6 5 4 8 8 C 1.38273 * 120.07425 * 0.02562 * 7 6 5 9 9 C 1.50700 * 119.93134 * 179.97438 * 8 7 6 10 10 N 1.46910 * 109.47214 * 89.99424 * 9 8 7 11 11 C 1.46893 * 111.00265 * 179.97438 * 10 9 8 12 12 H 1.08999 * 109.47400 * 325.00722 * 11 10 9 13 13 C 1.53007 * 109.46712 * 85.00290 * 11 10 9 14 14 C 1.52999 * 109.47402 * 205.00308 * 11 10 9 15 15 C 1.53004 * 109.46614 * 65.00349 * 14 11 10 16 16 C 1.50707 * 109.46575 * 180.02562 * 15 14 11 17 17 H 1.07998 * 119.99846 * 0.02562 * 16 15 14 18 18 C 1.37874 * 119.99700 * 179.97438 * 16 15 14 19 19 N 1.31513 * 119.99995 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 120.00165 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47160 * 89.99759 * 20 18 16 22 22 H 1.48494 * 109.47050 * 209.99671 * 20 18 16 23 23 H 1.48498 * 109.47013 * 329.99854 * 20 18 16 24 24 C 1.38275 * 120.14263 * 0.25062 * 8 7 6 25 25 C 1.38112 * 120.07155 * 359.49199 * 24 8 7 26 26 H 1.09005 * 109.46790 * 269.99811 * 1 2 3 27 27 H 1.09001 * 109.46780 * 30.00189 * 1 2 3 28 28 H 1.09001 * 109.46692 * 150.00313 * 1 2 3 29 29 H 0.96992 * 120.00289 * 5.27190 * 4 2 1 30 30 H 1.07999 * 120.04056 * 359.97438 * 6 5 4 31 31 H 1.08009 * 119.96097 * 179.97438 * 7 6 5 32 32 H 1.09007 * 109.47315 * 330.00164 * 9 8 7 33 33 H 1.08994 * 109.47813 * 209.99707 * 9 8 7 34 34 H 1.00897 * 111.00200 * 303.96116 * 10 9 8 35 35 H 1.08992 * 109.47379 * 299.99941 * 13 11 10 36 36 H 1.09002 * 109.46735 * 60.00596 * 13 11 10 37 37 H 1.09007 * 109.46835 * 179.97438 * 13 11 10 38 38 H 1.09000 * 109.46989 * 184.99893 * 14 11 10 39 39 H 1.08997 * 109.47231 * 305.00289 * 14 11 10 40 40 H 1.09000 * 109.47070 * 299.99495 * 15 14 11 41 41 H 1.08993 * 109.47471 * 60.00541 * 15 14 11 42 42 H 0.97005 * 120.00024 * 179.97438 * 19 18 16 43 43 H 1.08008 * 119.96608 * 179.74564 * 24 8 7 44 44 H 1.07995 * 120.04088 * 180.25323 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5758 -1.1696 0.1119 6 6 4.2150 -0.1973 0.8699 7 6 5.5920 -0.2023 0.9773 8 6 6.3339 -1.1736 0.3308 9 6 7.8362 -1.1756 0.4497 10 7 8.2348 -1.9889 1.6065 11 6 9.6961 -2.0143 1.7537 12 1 10.1609 -2.0044 0.7678 13 6 10.1505 -0.7856 2.5441 14 6 10.1114 -3.2834 2.5006 15 6 9.7687 -4.5097 1.6521 16 6 10.1773 -5.7597 2.3880 17 1 10.6351 -5.6868 3.3634 18 6 9.9655 -6.9964 1.8164 19 7 10.3225 -8.0873 2.4584 20 14 9.1730 -7.1225 0.1296 21 1 10.2272 -7.0956 -0.9159 22 1 8.4129 -8.3946 0.0336 23 1 8.2488 -5.9774 -0.0699 24 6 5.7008 -2.1397 -0.4294 25 6 4.3239 -2.1435 -0.5366 26 1 -0.3633 0.0000 1.0277 27 1 -0.3633 0.8900 -0.5139 28 1 -0.3633 -0.8900 -0.5138 29 1 1.6991 -2.0054 -0.0763 30 1 3.6361 0.5623 1.3741 31 1 6.0898 0.5539 1.5664 32 1 8.1915 -0.1539 0.5843 33 1 8.2720 -1.5953 -0.4569 34 1 7.7917 -1.6586 2.4506 35 1 9.8546 0.1185 2.0121 36 1 9.6858 -0.7956 3.5301 37 1 11.2349 -0.8047 2.6538 38 1 11.1850 -3.2598 2.6879 39 1 9.5780 -3.3376 3.4495 40 1 8.6952 -4.5333 1.4647 41 1 10.3022 -4.4556 0.7031 42 1 10.1732 -8.9575 2.0564 43 1 6.2835 -2.8946 -0.9365 44 1 3.8297 -2.9008 -1.1271 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172490333.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:52:16 Heat of formation + Delta-G solvation = -24.962445 kcal Electronic energy + Delta-G solvation = -22309.612332 eV Core-core repulsion = 19033.092580 eV Total energy + Delta-G solvation = -3276.519751 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.71322 -38.89059 -37.17051 -35.16274 -33.28419 -32.09184 -30.99244 -30.71339 -29.64696 -28.22166 -25.39773 -24.46170 -23.12254 -21.60408 -21.00609 -20.59444 -19.80039 -18.03847 -17.22166 -16.58496 -16.01451 -15.65069 -15.34652 -15.03464 -14.61508 -14.27837 -14.07401 -13.70788 -13.52156 -13.33191 -13.14198 -12.96916 -12.78432 -12.59101 -12.47568 -12.31523 -11.98249 -11.82684 -11.38215 -11.20017 -11.18597 -10.81299 -10.54649 -10.44993 -10.09538 -9.79072 -9.61185 -9.44342 -8.98194 -8.93833 -8.41089 -8.21265 -7.92938 -5.92308 -3.88001 1.14254 1.41107 2.27456 2.77495 3.39465 3.46040 3.54202 3.72053 4.32825 4.57387 4.59619 4.70421 4.82461 4.91619 4.92333 5.00681 5.24986 5.28458 5.32586 5.37605 5.43572 5.46194 5.50943 5.61190 5.67587 5.78148 6.01955 6.05228 6.19205 6.22023 6.23322 6.31322 6.40516 6.56582 6.66835 6.75715 6.96256 7.07692 7.13892 7.36422 7.55177 7.71509 7.76769 7.79059 7.97016 8.68506 9.14201 9.72035 11.21682 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.016700 B = 0.003374 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.282798 B = 8296.353343 C = 9535.495800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.508 3.492 3 O -0.528 6.528 4 N -0.673 5.673 5 C 0.136 3.864 6 C -0.122 4.122 7 C -0.096 4.096 8 C -0.088 4.088 9 C 0.098 3.902 10 N -0.669 5.669 11 C 0.081 3.919 12 H 0.072 0.928 13 C -0.181 4.181 14 C -0.090 4.090 15 C -0.006 4.006 16 C -0.515 4.515 17 H 0.067 0.933 18 C 0.063 3.937 19 N -0.911 5.911 20 Si 0.880 3.120 21 H -0.281 1.281 22 H -0.291 1.291 23 H -0.261 1.261 24 C -0.075 4.075 25 C -0.144 4.144 26 H 0.097 0.903 27 H 0.096 0.904 28 H 0.082 0.918 29 H 0.411 0.589 30 H 0.130 0.870 31 H 0.121 0.879 32 H 0.033 0.967 33 H 0.079 0.921 34 H 0.338 0.662 35 H 0.044 0.956 36 H 0.055 0.945 37 H 0.060 0.940 38 H 0.052 0.948 39 H 0.053 0.947 40 H 0.032 0.968 41 H 0.002 0.998 42 H 0.260 0.740 43 H 0.130 0.870 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.812 17.239 -5.987 25.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.296 3.704 3 O -0.404 6.404 4 N -0.319 5.319 5 C 0.042 3.958 6 C -0.142 4.142 7 C -0.115 4.115 8 C -0.089 4.089 9 C -0.030 4.030 10 N -0.300 5.300 11 C -0.029 4.029 12 H 0.090 0.910 13 C -0.240 4.240 14 C -0.128 4.128 15 C -0.044 4.044 16 C -0.553 4.553 17 H 0.086 0.914 18 C -0.137 4.137 19 N -0.550 5.550 20 Si 0.707 3.293 21 H -0.207 1.207 22 H -0.218 1.218 23 H -0.185 1.185 24 C -0.094 4.094 25 C -0.165 4.165 26 H 0.116 0.884 27 H 0.114 0.886 28 H 0.101 0.899 29 H 0.247 0.753 30 H 0.148 0.852 31 H 0.139 0.861 32 H 0.051 0.949 33 H 0.097 0.903 34 H 0.156 0.844 35 H 0.064 0.936 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.050 0.950 41 H 0.020 0.980 42 H 0.070 0.930 43 H 0.148 0.852 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -17.466 17.234 -6.341 25.343 hybrid contribution -0.482 0.135 -0.538 0.735 sum -17.948 17.369 -6.880 25.906 Atomic orbital electron populations 1.21895 0.90809 1.05218 1.05163 1.21008 0.90871 0.83219 0.75260 1.90753 1.70565 1.31247 1.47799 1.43649 1.05554 1.09824 1.72880 1.17718 0.82346 0.97892 0.97825 1.21005 0.94687 0.99405 0.99062 1.20907 0.93214 0.98327 0.99078 1.19843 0.95662 0.95349 0.98044 1.20896 0.90512 0.95689 0.95936 1.60590 1.07927 1.55445 1.06032 1.21793 0.86781 0.95032 0.99282 0.90971 1.22524 1.02202 0.98580 1.00658 1.21451 0.99259 0.93275 0.98801 1.19474 0.97452 0.92841 0.94602 1.21276 1.39499 0.89604 1.04955 0.91444 1.25032 0.95342 0.95809 0.97548 1.69936 1.48847 0.97720 1.38546 0.86763 0.80103 0.77438 0.84970 1.20668 1.21766 1.18496 1.20901 0.93404 0.97406 0.97738 1.20874 0.94217 1.00142 1.01229 0.88409 0.88551 0.89929 0.75333 0.85204 0.86070 0.94856 0.90303 0.84378 0.93644 0.92635 0.92103 0.92903 0.92865 0.94991 0.97995 0.93016 0.85248 0.85808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.76 10.31 36.01 0.37 -0.39 16 2 C 0.51 4.68 7.68 -10.98 -0.08 4.59 16 3 O -0.53 -7.21 14.78 5.55 0.08 -7.13 16 4 N -0.67 -5.77 5.34 -9.86 -0.05 -5.82 16 5 C 0.14 1.59 6.28 -83.69 -0.53 1.06 16 6 C -0.12 -1.55 8.66 -39.39 -0.34 -1.89 16 7 C -0.10 -1.19 9.69 -39.61 -0.38 -1.57 16 8 C -0.09 -1.15 5.39 -104.60 -0.56 -1.71 16 9 C 0.10 1.29 5.61 -4.97 -0.03 1.27 16 10 N -0.67 -10.20 5.69 -107.99 -0.61 -10.82 16 11 C 0.08 1.27 2.59 -67.71 -0.18 1.09 16 12 H 0.07 1.15 7.80 -51.93 -0.40 0.75 16 13 C -0.18 -2.33 9.16 37.16 0.34 -1.99 16 14 C -0.09 -1.79 4.83 -26.73 -0.13 -1.92 16 15 C -0.01 -0.15 3.93 -27.88 -0.11 -0.26 16 16 C -0.52 -15.14 9.66 -34.44 -0.33 -15.47 16 17 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 18 C 0.06 1.88 5.47 -17.82 -0.10 1.78 16 19 N -0.91 -28.90 13.96 55.43 0.77 -28.13 16 20 Si 0.88 22.40 27.47 -169.99 -4.67 17.73 16 21 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 23 H -0.26 -6.38 6.54 56.52 0.37 -6.01 16 24 C -0.08 -0.98 9.69 -39.61 -0.38 -1.37 16 25 C -0.14 -1.67 9.96 -39.39 -0.39 -2.06 16 26 H 0.10 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 29 H 0.41 2.11 8.82 -40.82 -0.36 1.75 16 30 H 0.13 1.70 6.41 -52.49 -0.34 1.36 16 31 H 0.12 1.30 8.06 -52.48 -0.42 0.88 16 32 H 0.03 0.40 7.38 -51.92 -0.38 0.01 16 33 H 0.08 1.06 7.99 -51.93 -0.42 0.65 16 34 H 0.34 4.83 8.47 -39.29 -0.33 4.49 16 35 H 0.04 0.52 7.45 -51.93 -0.39 0.13 16 36 H 0.05 0.69 8.13 -51.93 -0.42 0.27 16 37 H 0.06 0.76 8.14 -51.92 -0.42 0.34 16 38 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.03 0.80 6.81 -51.93 -0.35 0.45 16 41 H 0.00 0.04 7.57 -51.93 -0.39 -0.35 16 42 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 43 H 0.13 1.69 8.06 -52.48 -0.42 1.26 16 44 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 363.06 15.07 5.47 5.47 Total: -1.00 -35.33 363.06 -9.02 -44.35 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -7.18 Total: 3.18 kcal Atomic # 6 Polarization: -16.00 SS G_CDS: -2.84 Total: -18.84 kcal Atomic # 7 Polarization: -44.87 SS G_CDS: 0.11 Total: -44.77 kcal Atomic # 8 Polarization: -7.21 SS G_CDS: 0.08 Total: -7.13 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -4.67 Total: 17.73 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.33 -9.02 -44.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172490333.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.389 kcal (2) G-P(sol) polarization free energy of solvation -35.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds