Wall clock time and date at job start Tue Mar 31 2020 07:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 O 1.21288 * 119.99842 * 2 1 4 4 N 1.34774 * 119.99839 * 179.97438 * 2 1 3 5 5 C 1.39927 * 119.99556 * 185.27317 * 4 2 1 6 6 C 1.38871 * 120.06945 * 33.29223 * 5 4 2 7 7 C 1.38119 * 119.92279 * 180.02562 * 6 5 4 8 8 C 1.38273 * 120.07425 * 0.02562 * 7 6 5 9 9 C 1.50700 * 119.93134 * 179.97438 * 8 7 6 10 10 N 1.46910 * 109.47214 * 89.99424 * 9 8 7 11 11 C 1.46893 * 111.00265 * 179.97438 * 10 9 8 12 12 H 1.08999 * 109.47400 * 325.00722 * 11 10 9 13 13 C 1.53007 * 109.46712 * 85.00290 * 11 10 9 14 14 C 1.52999 * 109.47402 * 205.00308 * 11 10 9 15 15 C 1.53004 * 109.46614 * 65.00349 * 14 11 10 16 16 C 1.50707 * 109.46575 * 180.02562 * 15 14 11 17 17 H 1.07998 * 119.99846 * 0.02562 * 16 15 14 18 18 C 1.37874 * 119.99700 * 179.97438 * 16 15 14 19 19 N 1.31513 * 119.99995 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 120.00165 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47160 * 89.99759 * 20 18 16 22 22 H 1.48494 * 109.47050 * 209.99671 * 20 18 16 23 23 H 1.48498 * 109.47013 * 329.99854 * 20 18 16 24 24 C 1.38275 * 120.14263 * 0.25062 * 8 7 6 25 25 C 1.38112 * 120.07155 * 359.49199 * 24 8 7 26 26 H 1.09005 * 109.46790 * 269.99811 * 1 2 3 27 27 H 1.09001 * 109.46780 * 30.00189 * 1 2 3 28 28 H 1.09001 * 109.46692 * 150.00313 * 1 2 3 29 29 H 0.96992 * 120.00289 * 5.27190 * 4 2 1 30 30 H 1.07999 * 120.04056 * 359.97438 * 6 5 4 31 31 H 1.08009 * 119.96097 * 179.97438 * 7 6 5 32 32 H 1.09007 * 109.47315 * 330.00164 * 9 8 7 33 33 H 1.08994 * 109.47813 * 209.99707 * 9 8 7 34 34 H 1.00897 * 111.00200 * 303.96116 * 10 9 8 35 35 H 1.08992 * 109.47379 * 299.99941 * 13 11 10 36 36 H 1.09002 * 109.46735 * 60.00596 * 13 11 10 37 37 H 1.09007 * 109.46835 * 179.97438 * 13 11 10 38 38 H 1.09000 * 109.46989 * 184.99893 * 14 11 10 39 39 H 1.08997 * 109.47231 * 305.00289 * 14 11 10 40 40 H 1.09000 * 109.47070 * 299.99495 * 15 14 11 41 41 H 1.08993 * 109.47471 * 60.00541 * 15 14 11 42 42 H 0.97005 * 120.00024 * 179.97438 * 19 18 16 43 43 H 1.08008 * 119.96608 * 179.74564 * 24 8 7 44 44 H 1.07995 * 120.04088 * 180.25323 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5758 -1.1696 0.1119 6 6 4.2150 -0.1973 0.8699 7 6 5.5920 -0.2023 0.9773 8 6 6.3339 -1.1736 0.3308 9 6 7.8362 -1.1756 0.4497 10 7 8.2348 -1.9889 1.6065 11 6 9.6961 -2.0143 1.7537 12 1 10.1609 -2.0044 0.7678 13 6 10.1505 -0.7856 2.5441 14 6 10.1114 -3.2834 2.5006 15 6 9.7687 -4.5097 1.6521 16 6 10.1773 -5.7597 2.3880 17 1 10.6351 -5.6868 3.3634 18 6 9.9655 -6.9964 1.8164 19 7 10.3225 -8.0873 2.4584 20 14 9.1730 -7.1225 0.1296 21 1 10.2272 -7.0956 -0.9159 22 1 8.4129 -8.3946 0.0336 23 1 8.2488 -5.9774 -0.0699 24 6 5.7008 -2.1397 -0.4294 25 6 4.3239 -2.1435 -0.5366 26 1 -0.3633 0.0000 1.0277 27 1 -0.3633 0.8900 -0.5139 28 1 -0.3633 -0.8900 -0.5138 29 1 1.6991 -2.0054 -0.0763 30 1 3.6361 0.5623 1.3741 31 1 6.0898 0.5539 1.5664 32 1 8.1915 -0.1539 0.5843 33 1 8.2720 -1.5953 -0.4569 34 1 7.7917 -1.6586 2.4506 35 1 9.8546 0.1185 2.0121 36 1 9.6858 -0.7956 3.5301 37 1 11.2349 -0.8047 2.6538 38 1 11.1850 -3.2598 2.6879 39 1 9.5780 -3.3376 3.4495 40 1 8.6952 -4.5333 1.4647 41 1 10.3022 -4.4556 0.7031 42 1 10.1732 -8.9575 2.0564 43 1 6.2835 -2.8946 -0.9365 44 1 3.8297 -2.9008 -1.1271 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172490333.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:52:14 Heat of formation + Delta-G solvation = -48.995929 kcal Electronic energy + Delta-G solvation = -22310.654502 eV Core-core repulsion = 19033.092580 eV Total energy + Delta-G solvation = -3277.561921 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -41.51078 -39.80317 -38.37829 -36.10813 -35.15373 -33.55292 -31.94855 -31.86475 -30.76918 -29.13614 -27.10965 -25.56570 -24.02632 -22.84620 -22.37157 -21.51339 -21.24283 -18.84892 -18.78220 -17.94518 -16.96338 -16.58563 -16.47502 -16.28856 -15.99053 -15.41930 -15.19768 -14.90274 -14.63192 -14.42850 -14.27807 -14.24083 -13.95086 -13.61933 -13.41775 -13.29682 -13.15258 -12.99878 -12.85383 -12.80719 -12.21518 -12.10703 -11.98652 -11.63767 -11.46610 -11.36351 -11.32293 -11.09498 -10.90778 -10.69799 -9.86986 -9.21479 -8.97086 -8.24198 -6.26233 0.23983 0.46993 1.37788 1.40458 1.55400 1.56368 2.12481 2.41911 2.78295 3.12186 3.49032 3.76538 3.92596 3.97258 4.05106 4.08179 4.28762 4.38165 4.45781 4.45903 4.50682 4.60326 4.63621 4.73092 4.76501 4.78759 4.95403 5.02703 5.06062 5.06230 5.13111 5.26433 5.29390 5.34530 5.40068 5.52041 5.62205 5.72249 5.73281 5.81352 6.05802 6.26397 6.37062 6.43475 6.60563 6.82646 7.11274 7.38110 8.93086 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.016700 B = 0.003374 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.282798 B = 8296.353343 C = 9535.495800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.502 3.498 3 O -0.579 6.579 4 N -0.664 5.664 5 C 0.131 3.869 6 C -0.138 4.138 7 C -0.098 4.098 8 C -0.099 4.099 9 C 0.105 3.895 10 N -0.686 5.686 11 C 0.090 3.910 12 H 0.074 0.926 13 C -0.172 4.172 14 C -0.085 4.085 15 C 0.002 3.998 16 C -0.529 4.529 17 H 0.026 0.974 18 C -0.001 4.001 19 N -0.958 5.958 20 Si 0.953 3.047 21 H -0.269 1.269 22 H -0.286 1.286 23 H -0.243 1.243 24 C -0.091 4.091 25 C -0.145 4.145 26 H 0.114 0.886 27 H 0.096 0.904 28 H 0.112 0.888 29 H 0.428 0.572 30 H 0.122 0.878 31 H 0.134 0.866 32 H 0.050 0.950 33 H 0.075 0.925 34 H 0.342 0.658 35 H 0.065 0.935 36 H 0.057 0.943 37 H 0.063 0.937 38 H 0.048 0.952 39 H 0.042 0.958 40 H 0.028 0.972 41 H 0.006 0.994 42 H 0.264 0.736 43 H 0.127 0.873 44 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.734 18.243 -7.689 27.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.293 3.707 3 O -0.458 6.458 4 N -0.311 5.311 5 C 0.037 3.963 6 C -0.158 4.158 7 C -0.117 4.117 8 C -0.100 4.100 9 C -0.023 4.023 10 N -0.317 5.317 11 C -0.019 4.019 12 H 0.092 0.908 13 C -0.230 4.230 14 C -0.123 4.123 15 C -0.035 4.035 16 C -0.567 4.567 17 H 0.044 0.956 18 C -0.197 4.197 19 N -0.599 5.599 20 Si 0.776 3.224 21 H -0.195 1.195 22 H -0.212 1.212 23 H -0.166 1.166 24 C -0.110 4.110 25 C -0.165 4.165 26 H 0.132 0.868 27 H 0.115 0.885 28 H 0.131 0.869 29 H 0.268 0.732 30 H 0.140 0.860 31 H 0.152 0.848 32 H 0.068 0.932 33 H 0.093 0.907 34 H 0.161 0.839 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.066 0.934 39 H 0.061 0.939 40 H 0.047 0.953 41 H 0.024 0.976 42 H 0.073 0.927 43 H 0.145 0.855 44 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -19.411 18.229 -8.039 27.815 hybrid contribution 0.112 -0.209 0.082 0.251 sum -19.299 18.019 -7.957 27.577 Atomic orbital electron populations 1.21931 0.86774 1.06757 1.06605 1.21931 0.92712 0.82374 0.73671 1.90731 1.71921 1.33003 1.50149 1.43671 1.04461 1.10815 1.72110 1.17884 0.83931 0.97370 0.97133 1.21095 0.95025 0.99831 0.99830 1.21043 0.93189 0.98477 0.98992 1.19873 0.95649 0.95823 0.98703 1.20847 0.90593 0.96138 0.94771 1.60488 1.07502 1.56770 1.06987 1.21553 0.87428 0.93930 0.99035 0.90815 1.22405 1.02380 0.97740 1.00520 1.21347 0.98967 0.93866 0.98163 1.19358 0.96908 0.92475 0.94759 1.21673 1.39076 0.92084 1.03879 0.95554 1.26051 0.96006 0.95262 1.02343 1.70094 1.50454 0.98516 1.40867 0.85607 0.79503 0.78082 0.79165 1.19459 1.21187 1.16649 1.21061 0.94248 0.97572 0.98142 1.21095 0.93820 1.00511 1.01106 0.86813 0.88484 0.86915 0.73249 0.86045 0.84819 0.93200 0.90696 0.83896 0.91629 0.92381 0.91780 0.93352 0.93897 0.95321 0.97594 0.92734 0.85467 0.83458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.99 10.31 71.24 0.73 -0.25 16 2 C 0.50 8.50 7.68 87.66 0.67 9.18 16 3 O -0.58 -15.67 14.78 -3.05 -0.05 -15.72 16 4 N -0.66 -10.11 5.34 -303.49 -1.62 -11.73 16 5 C 0.13 2.90 6.28 38.15 0.24 3.14 16 6 C -0.14 -3.43 8.66 22.39 0.19 -3.24 16 7 C -0.10 -2.33 9.69 22.25 0.22 -2.12 16 8 C -0.10 -2.47 5.39 -19.85 -0.11 -2.58 16 9 C 0.10 2.56 5.61 85.55 0.48 3.04 16 10 N -0.69 -19.81 5.69 -495.56 -2.82 -22.63 16 11 C 0.09 2.69 2.59 44.92 0.12 2.81 16 12 H 0.07 2.20 7.80 -2.39 -0.02 2.18 16 13 C -0.17 -4.02 9.16 71.98 0.66 -3.36 16 14 C -0.09 -3.38 4.83 30.60 0.15 -3.23 16 15 C 0.00 0.12 3.93 29.85 0.12 0.24 16 16 C -0.53 -31.81 9.66 25.60 0.25 -31.56 16 17 H 0.03 1.74 7.99 -2.91 -0.02 1.71 16 18 C 0.00 -0.06 5.47 84.65 0.46 0.40 16 19 N -0.96 -62.14 13.96 21.45 0.30 -61.84 16 20 Si 0.95 46.00 27.47 68.60 1.88 47.88 16 21 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 22 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 23 H -0.24 -10.97 6.54 99.48 0.65 -10.32 16 24 C -0.09 -2.25 9.69 22.25 0.22 -2.04 16 25 C -0.15 -3.10 9.96 22.39 0.22 -2.88 16 26 H 0.11 0.39 8.14 -2.38 -0.02 0.38 16 27 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.11 0.02 8.14 -2.39 -0.02 0.00 16 29 H 0.43 3.22 8.82 -92.71 -0.82 2.41 16 30 H 0.12 3.21 6.41 -2.91 -0.02 3.19 16 31 H 0.13 2.71 8.06 -2.91 -0.02 2.69 16 32 H 0.05 1.05 7.38 -2.38 -0.02 1.04 16 33 H 0.07 1.88 7.99 -2.39 -0.02 1.86 16 34 H 0.34 9.27 8.47 -89.70 -0.76 8.51 16 35 H 0.06 1.30 7.45 -2.39 -0.02 1.28 16 36 H 0.06 1.33 8.13 -2.39 -0.02 1.31 16 37 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 38 H 0.05 1.92 8.14 -2.39 -0.02 1.91 16 39 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.03 1.41 6.81 -2.39 -0.02 1.39 16 41 H 0.01 0.27 7.57 -2.39 -0.02 0.26 16 42 H 0.26 15.94 8.31 -92.70 -0.77 15.17 16 43 H 0.13 3.14 8.06 -2.91 -0.02 3.11 16 44 H 0.15 2.33 8.06 -2.91 -0.02 2.31 16 Total: -1.00 -78.52 363.06 1.68 -76.84 By element: Atomic # 1 Polarization: 20.30 SS G_CDS: -0.64 Total: 19.66 kcal Atomic # 6 Polarization: -37.08 SS G_CDS: 4.62 Total: -32.46 kcal Atomic # 7 Polarization: -92.06 SS G_CDS: -4.14 Total: -96.20 kcal Atomic # 8 Polarization: -15.67 SS G_CDS: -0.05 Total: -15.72 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 1.88 Total: 47.88 kcal Total: -78.52 1.68 -76.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172490333.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.841 kcal (2) G-P(sol) polarization free energy of solvation -78.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds