Wall clock time and date at job start Tue Mar 31 2020 07:52:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.47110 * 2 1 4 4 C 1.53000 * 109.47213 * 240.00130 * 2 1 3 5 5 C 1.52994 * 109.47499 * 174.99549 * 4 2 1 6 6 C 1.50693 * 109.47349 * 179.97438 * 5 4 2 7 7 H 1.08005 * 119.99961 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00175 * 180.02562 * 6 5 4 9 9 N 1.31512 * 119.99967 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 120.00181 * 180.02562 * 8 6 5 11 11 H 1.48507 * 109.46930 * 89.99705 * 10 8 6 12 12 H 1.48495 * 109.47190 * 209.99691 * 10 8 6 13 13 H 1.48501 * 109.46885 * 330.00124 * 10 8 6 14 14 N 1.46894 * 109.47413 * 119.99919 * 2 1 3 15 15 C 1.46899 * 111.00135 * 275.00156 * 14 2 1 16 16 C 1.52997 * 109.47271 * 180.02562 * 15 14 2 17 17 C 1.53002 * 109.47446 * 179.97438 * 16 15 14 18 18 C 1.50693 * 109.47522 * 179.97438 * 17 16 15 19 19 O 1.21260 * 120.00056 * 0.02562 * 18 17 16 20 20 C 1.47168 * 120.00185 * 179.97438 * 18 17 16 21 21 C 1.40296 * 120.58582 * 180.02562 * 20 18 17 22 22 C 1.38287 * 118.26435 * 179.97438 * 21 20 18 23 23 C 1.38394 * 119.32761 * 0.28025 * 22 21 20 24 24 N 1.31947 * 121.14567 * 359.43804 * 23 22 21 25 25 C 1.31652 * 121.90294 * 0.55011 * 24 23 22 26 26 H 1.09003 * 109.46489 * 300.00126 * 1 2 3 27 27 H 1.08992 * 109.47107 * 59.99538 * 1 2 3 28 28 H 1.08994 * 109.46648 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47064 * 295.00148 * 4 2 1 30 30 H 1.09007 * 109.47086 * 54.99372 * 4 2 1 31 31 H 1.08996 * 109.47452 * 300.00362 * 5 4 2 32 32 H 1.09007 * 109.46572 * 59.99866 * 5 4 2 33 33 H 0.96996 * 119.99986 * 180.02562 * 9 8 6 34 34 H 1.00898 * 110.99947 * 151.04569 * 14 2 1 35 35 H 1.09002 * 109.47563 * 59.99690 * 15 14 2 36 36 H 1.09005 * 109.47172 * 299.99582 * 15 14 2 37 37 H 1.08997 * 109.47179 * 59.99849 * 16 15 14 38 38 H 1.08995 * 109.47348 * 299.99621 * 16 15 14 39 39 H 1.08997 * 109.47010 * 59.99800 * 17 16 15 40 40 H 1.09008 * 109.46857 * 300.00061 * 17 16 15 41 41 H 1.08003 * 120.86661 * 359.95614 * 21 20 18 42 42 H 1.08002 * 120.33221 * 179.97438 * 22 21 20 43 43 H 1.08001 * 119.42558 * 179.70361 * 23 22 21 44 44 H 1.08004 * 119.73186 * 179.72360 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5648 -0.6132 -1.3138 6 6 4.0672 -1.3241 -2.5439 7 1 3.3687 -1.8046 -3.2130 8 6 5.4185 -1.3612 -2.8152 9 7 6.2690 -0.7757 -2.0007 10 14 6.0412 -2.2418 -4.3404 11 1 6.0916 -1.2874 -5.4771 12 1 7.4022 -2.7766 -4.0823 13 1 5.1245 -3.3614 -4.6745 14 7 2.0198 -0.6924 1.1994 15 6 2.0826 0.2226 2.3468 16 6 2.5964 -0.5328 3.5741 17 6 2.6624 0.4204 4.7691 18 6 3.1679 -0.3238 5.9780 19 8 3.4483 -1.5004 5.8922 20 6 3.3225 0.3777 7.2625 21 6 3.7925 -0.3030 8.3956 22 6 3.9198 0.4031 9.5778 23 6 3.5774 1.7437 9.6068 24 7 3.1427 2.3607 8.5245 25 6 3.0040 1.7343 7.3749 26 1 -0.3632 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3632 -1.0276 0.0005 29 1 1.7517 -1.7714 -1.2056 30 1 1.6053 -0.2617 -2.1370 31 1 3.8532 0.4370 -1.3574 32 1 3.9995 -1.0727 -0.4260 33 1 7.2196 -0.8015 -2.1917 34 1 2.9174 -1.1204 1.0286 35 1 1.0872 0.6164 2.5525 36 1 2.7590 1.0463 2.1182 37 1 3.5919 -0.9261 3.3681 38 1 1.9204 -1.3566 3.8030 39 1 1.6672 0.8141 4.9752 40 1 3.3387 1.2441 4.5399 41 1 4.0480 -1.3512 8.3459 42 1 4.2781 -0.0879 10.4705 43 1 3.6716 2.2955 10.5305 44 1 2.6409 2.2727 6.5119 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172490679.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:52:23 Heat of formation + Delta-G solvation = -28.642711 kcal Electronic energy + Delta-G solvation = -21721.188129 eV Core-core repulsion = 18444.508789 eV Total energy + Delta-G solvation = -3276.679340 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.85342 -39.17673 -37.33995 -34.40713 -32.96668 -32.93643 -32.15360 -30.48206 -29.10305 -26.59027 -25.11440 -24.32555 -23.68676 -21.58937 -21.19437 -20.18573 -19.36923 -17.81349 -16.82596 -16.57191 -16.37432 -16.02349 -15.28948 -15.14849 -14.73341 -14.50344 -14.36256 -14.15813 -13.63053 -13.56671 -13.23383 -12.68323 -12.55529 -12.43664 -12.29654 -11.98732 -11.68278 -11.33863 -11.25940 -11.06602 -10.90360 -10.70095 -10.46380 -10.37850 -10.32551 -10.14672 -9.76733 -9.72219 -9.64523 -9.26075 -9.01829 -8.35155 -7.94984 -6.00063 -4.01981 0.09045 0.76623 2.07777 3.32479 3.38444 3.38772 3.42587 3.54365 3.98431 4.31405 4.42543 4.46590 4.49298 4.54335 4.78033 4.93403 4.94236 5.10648 5.22173 5.35849 5.44013 5.44979 5.54972 5.56617 5.60395 5.75503 5.80322 5.85636 5.95947 6.10386 6.17962 6.22945 6.36104 6.38707 6.53298 6.58122 6.93203 7.10200 7.21131 7.41722 7.54742 7.63220 7.81163 7.93300 8.00647 8.43333 9.04765 9.62206 11.11227 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.019525 B = 0.002469 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.728911 B =11337.988255 C =12216.551841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.082 3.918 3 H 0.037 0.963 4 C -0.115 4.115 5 C 0.020 3.980 6 C -0.519 4.519 7 H 0.055 0.945 8 C 0.056 3.944 9 N -0.896 5.896 10 Si 0.892 3.108 11 H -0.281 1.281 12 H -0.287 1.287 13 H -0.274 1.274 14 N -0.689 5.689 15 C 0.060 3.940 16 C -0.110 4.110 17 C -0.165 4.165 18 C 0.399 3.601 19 O -0.441 6.441 20 C -0.219 4.219 21 C -0.021 4.021 22 C -0.185 4.185 23 C 0.123 3.877 24 N -0.492 5.492 25 C 0.147 3.853 26 H 0.042 0.958 27 H 0.050 0.950 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.012 0.988 32 H 0.016 0.984 33 H 0.260 0.740 34 H 0.353 0.647 35 H 0.065 0.935 36 H 0.028 0.972 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.101 0.899 40 H 0.102 0.898 41 H 0.145 0.855 42 H 0.142 0.858 43 H 0.161 0.839 44 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.892 5.653 22.806 24.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.027 4.027 3 H 0.055 0.945 4 C -0.153 4.153 5 C -0.017 4.017 6 C -0.557 4.557 7 H 0.073 0.927 8 C -0.145 4.145 9 N -0.536 5.536 10 Si 0.720 3.280 11 H -0.207 1.207 12 H -0.212 1.212 13 H -0.198 1.198 14 N -0.324 5.324 15 C -0.070 4.070 16 C -0.148 4.148 17 C -0.202 4.202 18 C 0.275 3.725 19 O -0.315 6.315 20 C -0.222 4.222 21 C -0.047 4.047 22 C -0.204 4.204 23 C -0.033 4.033 24 N -0.201 5.201 25 C -0.011 4.011 26 H 0.061 0.939 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.030 0.970 32 H 0.034 0.966 33 H 0.070 0.930 34 H 0.174 0.826 35 H 0.084 0.916 36 H 0.046 0.954 37 H 0.089 0.911 38 H 0.095 0.905 39 H 0.119 0.881 40 H 0.120 0.880 41 H 0.163 0.837 42 H 0.160 0.840 43 H 0.178 0.822 44 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -8.377 5.685 22.996 25.126 hybrid contribution 1.525 -0.673 -0.980 1.934 sum -6.851 5.012 22.016 23.596 Atomic orbital electron populations 1.21790 0.95833 1.01680 1.00088 1.21595 0.94454 0.96047 0.90628 0.94513 1.21834 0.99654 0.99485 0.94335 1.19125 0.88815 0.96803 0.96937 1.21242 0.91940 1.34196 1.08310 0.92661 1.25029 0.97094 0.95644 0.96718 1.69955 1.02362 1.44227 1.37021 0.86597 0.78146 0.79971 0.83317 1.20720 1.21243 1.19843 1.60573 1.34823 1.32523 1.04432 1.21933 0.99867 0.94182 0.90995 1.21381 1.03022 0.97948 0.92400 1.22029 1.03441 1.00617 0.94143 1.22429 0.73806 0.88025 0.88210 1.90562 1.37747 1.17226 1.85989 1.21706 1.06584 0.96923 0.97024 1.21942 0.90679 1.00830 0.91234 1.22190 1.02900 0.96123 0.99219 1.23077 0.91279 0.92081 0.96836 1.67757 1.13638 1.39276 0.99409 1.23258 0.91738 0.90379 0.95740 0.93851 0.93074 0.92404 0.92455 0.92764 0.97011 0.96633 0.93043 0.82552 0.91607 0.95382 0.91120 0.90545 0.88064 0.88002 0.83701 0.84041 0.82206 0.81567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.42 37.16 0.35 -1.65 16 2 C 0.08 1.43 2.65 -67.71 -0.18 1.25 16 3 H 0.04 0.66 7.80 -51.93 -0.40 0.25 16 4 C -0.12 -2.39 4.74 -26.73 -0.13 -2.52 16 5 C 0.02 0.52 4.80 -27.89 -0.13 0.39 16 6 C -0.52 -14.77 9.11 -34.44 -0.31 -15.08 16 7 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 8 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 9 N -0.90 -26.99 13.29 55.43 0.74 -26.26 16 10 Si 0.89 21.87 29.54 -169.99 -5.02 16.84 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 13 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 14 N -0.69 -11.61 6.31 -106.73 -0.67 -12.29 16 15 C 0.06 0.81 5.48 -3.83 -0.02 0.79 16 16 C -0.11 -1.36 4.76 -26.73 -0.13 -1.49 16 17 C -0.16 -1.48 4.34 -27.89 -0.12 -1.60 16 18 C 0.40 4.23 7.12 -30.69 -0.22 4.01 16 19 O -0.44 -6.20 16.05 5.57 0.09 -6.11 16 20 C -0.22 -2.00 5.89 -104.92 -0.62 -2.61 16 21 C -0.02 -0.18 9.72 -38.79 -0.38 -0.55 16 22 C -0.18 -1.17 10.10 -39.51 -0.40 -1.57 16 23 C 0.12 0.84 11.17 -17.44 -0.19 0.65 16 24 N -0.49 -4.40 10.34 -12.83 -0.13 -4.53 16 25 C 0.15 1.20 10.65 -17.05 -0.18 1.02 16 26 H 0.04 0.57 7.45 -51.93 -0.39 0.18 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.05 1.10 8.14 -51.92 -0.42 0.68 16 31 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.02 0.41 6.43 -51.93 -0.33 0.08 16 33 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 34 H 0.35 6.69 6.47 -39.29 -0.25 6.43 16 35 H 0.07 0.80 7.44 -51.93 -0.39 0.41 16 36 H 0.03 0.39 8.06 -51.93 -0.42 -0.03 16 37 H 0.07 1.01 8.10 -51.93 -0.42 0.59 16 38 H 0.08 1.02 8.10 -51.93 -0.42 0.60 16 39 H 0.10 0.68 8.10 -51.93 -0.42 0.26 16 40 H 0.10 0.77 8.10 -51.92 -0.42 0.35 16 41 H 0.15 1.15 7.73 -52.48 -0.41 0.74 16 42 H 0.14 0.51 8.06 -52.49 -0.42 0.09 16 43 H 0.16 0.62 8.06 -52.49 -0.42 0.19 16 44 H 0.17 0.95 7.08 -52.48 -0.37 0.58 16 LS Contribution 365.97 15.07 5.52 5.52 Total: -1.00 -32.98 365.97 -9.39 -42.37 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -7.14 Total: 1.89 kcal Atomic # 6 Polarization: -14.68 SS G_CDS: -2.76 Total: -17.44 kcal Atomic # 7 Polarization: -43.00 SS G_CDS: -0.07 Total: -43.07 kcal Atomic # 8 Polarization: -6.20 SS G_CDS: 0.09 Total: -6.11 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.98 -9.39 -42.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172490679.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.726 kcal (2) G-P(sol) polarization free energy of solvation -32.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds