Wall clock time and date at job start Tue Mar 31 2020 07:52:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.47110 * 2 1 4 4 C 1.53000 * 109.47213 * 240.00130 * 2 1 3 5 5 C 1.52994 * 109.47499 * 174.99549 * 4 2 1 6 6 C 1.50693 * 109.47349 * 179.97438 * 5 4 2 7 7 H 1.08005 * 119.99961 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00175 * 180.02562 * 6 5 4 9 9 N 1.31512 * 119.99967 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 120.00181 * 180.02562 * 8 6 5 11 11 H 1.48507 * 109.46930 * 89.99705 * 10 8 6 12 12 H 1.48495 * 109.47190 * 209.99691 * 10 8 6 13 13 H 1.48501 * 109.46885 * 330.00124 * 10 8 6 14 14 N 1.46894 * 109.47413 * 119.99919 * 2 1 3 15 15 C 1.46899 * 111.00135 * 275.00156 * 14 2 1 16 16 C 1.52997 * 109.47271 * 180.02562 * 15 14 2 17 17 C 1.53002 * 109.47446 * 179.97438 * 16 15 14 18 18 C 1.50693 * 109.47522 * 179.97438 * 17 16 15 19 19 O 1.21260 * 120.00056 * 0.02562 * 18 17 16 20 20 C 1.47168 * 120.00185 * 179.97438 * 18 17 16 21 21 C 1.40296 * 120.58582 * 180.02562 * 20 18 17 22 22 C 1.38287 * 118.26435 * 179.97438 * 21 20 18 23 23 C 1.38394 * 119.32761 * 0.28025 * 22 21 20 24 24 N 1.31947 * 121.14567 * 359.43804 * 23 22 21 25 25 C 1.31652 * 121.90294 * 0.55011 * 24 23 22 26 26 H 1.09003 * 109.46489 * 300.00126 * 1 2 3 27 27 H 1.08992 * 109.47107 * 59.99538 * 1 2 3 28 28 H 1.08994 * 109.46648 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47064 * 295.00148 * 4 2 1 30 30 H 1.09007 * 109.47086 * 54.99372 * 4 2 1 31 31 H 1.08996 * 109.47452 * 300.00362 * 5 4 2 32 32 H 1.09007 * 109.46572 * 59.99866 * 5 4 2 33 33 H 0.96996 * 119.99986 * 180.02562 * 9 8 6 34 34 H 1.00898 * 110.99947 * 151.04569 * 14 2 1 35 35 H 1.09002 * 109.47563 * 59.99690 * 15 14 2 36 36 H 1.09005 * 109.47172 * 299.99582 * 15 14 2 37 37 H 1.08997 * 109.47179 * 59.99849 * 16 15 14 38 38 H 1.08995 * 109.47348 * 299.99621 * 16 15 14 39 39 H 1.08997 * 109.47010 * 59.99800 * 17 16 15 40 40 H 1.09008 * 109.46857 * 300.00061 * 17 16 15 41 41 H 1.08003 * 120.86661 * 359.95614 * 21 20 18 42 42 H 1.08002 * 120.33221 * 179.97438 * 22 21 20 43 43 H 1.08001 * 119.42558 * 179.70361 * 23 22 21 44 44 H 1.08004 * 119.73186 * 179.72360 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5648 -0.6132 -1.3138 6 6 4.0672 -1.3241 -2.5439 7 1 3.3687 -1.8046 -3.2130 8 6 5.4185 -1.3612 -2.8152 9 7 6.2690 -0.7757 -2.0007 10 14 6.0412 -2.2418 -4.3404 11 1 6.0916 -1.2874 -5.4771 12 1 7.4022 -2.7766 -4.0823 13 1 5.1245 -3.3614 -4.6745 14 7 2.0198 -0.6924 1.1994 15 6 2.0826 0.2226 2.3468 16 6 2.5964 -0.5328 3.5741 17 6 2.6624 0.4204 4.7691 18 6 3.1679 -0.3238 5.9780 19 8 3.4483 -1.5004 5.8922 20 6 3.3225 0.3777 7.2625 21 6 3.7925 -0.3030 8.3956 22 6 3.9198 0.4031 9.5778 23 6 3.5774 1.7437 9.6068 24 7 3.1427 2.3607 8.5245 25 6 3.0040 1.7343 7.3749 26 1 -0.3632 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3632 -1.0276 0.0005 29 1 1.7517 -1.7714 -1.2056 30 1 1.6053 -0.2617 -2.1370 31 1 3.8532 0.4370 -1.3574 32 1 3.9995 -1.0727 -0.4260 33 1 7.2196 -0.8015 -2.1917 34 1 2.9174 -1.1204 1.0286 35 1 1.0872 0.6164 2.5525 36 1 2.7590 1.0463 2.1182 37 1 3.5919 -0.9261 3.3681 38 1 1.9204 -1.3566 3.8030 39 1 1.6672 0.8141 4.9752 40 1 3.3387 1.2441 4.5399 41 1 4.0480 -1.3512 8.3459 42 1 4.2781 -0.0879 10.4705 43 1 3.6716 2.2955 10.5305 44 1 2.6409 2.2727 6.5119 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172490679.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:52:22 Heat of formation + Delta-G solvation = -49.176290 kcal Electronic energy + Delta-G solvation = -21722.078532 eV Core-core repulsion = 18444.508789 eV Total energy + Delta-G solvation = -3277.569742 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.51865 -39.96995 -38.72217 -35.80759 -34.72596 -33.57365 -32.97903 -31.89769 -30.55160 -27.60482 -26.90106 -25.10870 -24.38084 -23.24967 -22.36140 -21.18331 -20.68887 -18.56252 -18.39580 -17.50860 -17.20392 -17.06966 -16.57135 -16.49127 -16.23612 -15.55980 -15.14808 -15.07093 -14.72309 -14.52970 -14.32044 -14.17578 -14.10591 -13.41555 -13.23151 -13.18609 -13.09600 -12.98505 -12.84007 -12.43229 -12.33082 -12.22899 -11.89958 -11.75141 -11.49172 -11.30595 -11.01219 -10.99473 -10.92299 -10.55791 -10.44881 -10.21763 -9.29019 -8.21453 -6.31918 -0.54888 0.19701 1.34481 1.38389 1.39685 1.50926 2.39760 2.78485 2.80147 3.11540 3.33255 3.51868 3.75431 3.83552 3.94415 3.99736 4.05159 4.13866 4.16171 4.37831 4.42117 4.50862 4.58128 4.60938 4.72686 4.74829 4.79203 4.80398 4.98408 5.00596 5.05016 5.09049 5.15856 5.18604 5.24288 5.33838 5.46373 5.54152 5.57963 5.70859 5.83538 6.24277 6.29605 6.42851 6.45032 6.84729 6.84953 7.37163 8.89971 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.019525 B = 0.002469 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.728911 B =11337.988255 C =12216.551841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.086 3.914 3 H 0.031 0.969 4 C -0.104 4.104 5 C 0.027 3.973 6 C -0.543 4.543 7 H 0.058 0.942 8 C 0.000 4.000 9 N -0.932 5.932 10 Si 0.963 3.037 11 H -0.271 1.271 12 H -0.282 1.282 13 H -0.264 1.264 14 N -0.697 5.697 15 C 0.062 3.938 16 C -0.103 4.103 17 C -0.159 4.159 18 C 0.403 3.597 19 O -0.489 6.489 20 C -0.237 4.237 21 C -0.037 4.037 22 C -0.178 4.178 23 C 0.123 3.877 24 N -0.516 5.516 25 C 0.148 3.852 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.058 0.942 31 H -0.015 1.015 32 H -0.003 1.003 33 H 0.263 0.737 34 H 0.335 0.665 35 H 0.090 0.910 36 H 0.025 0.975 37 H 0.041 0.959 38 H 0.064 0.936 39 H 0.135 0.865 40 H 0.121 0.879 41 H 0.140 0.860 42 H 0.171 0.829 43 H 0.191 0.809 44 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.020 6.620 23.530 26.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.023 4.023 3 H 0.049 0.951 4 C -0.142 4.142 5 C -0.010 4.010 6 C -0.581 4.581 7 H 0.076 0.924 8 C -0.198 4.198 9 N -0.572 5.572 10 Si 0.788 3.212 11 H -0.197 1.197 12 H -0.208 1.208 13 H -0.189 1.189 14 N -0.329 5.329 15 C -0.067 4.067 16 C -0.141 4.141 17 C -0.196 4.196 18 C 0.283 3.717 19 O -0.366 6.366 20 C -0.240 4.240 21 C -0.063 4.063 22 C -0.198 4.198 23 C -0.032 4.032 24 N -0.224 5.224 25 C -0.010 4.010 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.003 0.997 32 H 0.015 0.985 33 H 0.072 0.928 34 H 0.155 0.845 35 H 0.108 0.892 36 H 0.043 0.957 37 H 0.060 0.940 38 H 0.083 0.917 39 H 0.152 0.848 40 H 0.139 0.861 41 H 0.158 0.842 42 H 0.188 0.812 43 H 0.208 0.792 44 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -9.535 6.676 23.728 26.429 hybrid contribution 1.899 -0.937 -1.114 2.392 sum -7.636 5.739 22.614 24.549 Atomic orbital electron populations 1.21712 0.93036 1.02044 1.01739 1.21548 0.96514 0.95013 0.89260 0.95062 1.21665 0.96126 0.99790 0.96580 1.18999 0.92197 0.94469 0.95335 1.21701 0.92544 1.34524 1.09308 0.92383 1.25966 0.97375 0.96385 1.00089 1.70085 1.02732 1.45452 1.38965 0.85473 0.77568 0.78960 0.79214 1.19694 1.20786 1.18858 1.60693 1.33657 1.33415 1.05157 1.22031 1.01200 0.93520 0.89987 1.21257 1.00917 0.98359 0.93528 1.22053 1.05750 0.99927 0.91855 1.22782 0.72270 0.87399 0.89268 1.90551 1.40237 1.19135 1.86720 1.21632 1.08326 0.97532 0.96513 1.22125 0.91038 1.01006 0.92083 1.22487 1.01888 0.96004 0.99396 1.23648 0.89757 0.92441 0.97377 1.67828 1.14613 1.39901 1.00099 1.23565 0.91087 0.89894 0.96419 0.91761 0.91895 0.92657 0.92929 0.92339 0.99655 0.98496 0.92842 0.84548 0.89152 0.95651 0.94006 0.91709 0.84754 0.86095 0.84196 0.81171 0.79217 0.79449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.46 9.42 71.98 0.68 -2.78 16 2 C 0.09 2.96 2.65 44.92 0.12 3.08 16 3 H 0.03 1.11 7.80 -2.39 -0.02 1.09 16 4 C -0.10 -4.35 4.74 30.59 0.15 -4.20 16 5 C 0.03 1.44 4.80 29.84 0.14 1.58 16 6 C -0.54 -31.44 9.11 25.60 0.23 -31.21 16 7 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 8 C 0.00 -0.03 5.46 84.66 0.46 0.44 16 9 N -0.93 -57.33 13.29 21.45 0.28 -57.04 16 10 Si 0.96 45.05 29.54 68.60 2.03 47.07 16 11 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 12 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 13 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 14 N -0.70 -23.65 6.31 -491.57 -3.10 -26.75 16 15 C 0.06 1.63 5.48 86.30 0.47 2.10 16 16 C -0.10 -2.58 4.76 30.59 0.15 -2.43 16 17 C -0.16 -2.68 4.34 29.85 0.13 -2.55 16 18 C 0.40 8.62 7.12 28.03 0.20 8.82 16 19 O -0.49 -14.50 16.05 -2.97 -0.05 -14.55 16 20 C -0.24 -4.19 5.89 -20.06 -0.12 -4.31 16 21 C -0.04 -0.60 9.72 22.78 0.22 -0.38 16 22 C -0.18 -1.94 10.10 22.32 0.23 -1.72 16 23 C 0.12 1.40 11.17 84.71 0.95 2.35 16 24 N -0.52 -8.21 10.34 -194.51 -2.01 -10.22 16 25 C 0.15 2.19 10.65 85.10 0.91 3.09 16 26 H 0.06 1.48 7.45 -2.39 -0.02 1.47 16 27 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 30 H 0.06 2.37 8.14 -2.38 -0.02 2.35 16 31 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 32 H 0.00 -0.18 6.43 -2.38 -0.02 -0.19 16 33 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 34 H 0.34 13.33 6.47 -89.70 -0.58 12.75 16 35 H 0.09 1.96 7.44 -2.39 -0.02 1.94 16 36 H 0.03 0.69 8.06 -2.38 -0.02 0.67 16 37 H 0.04 1.27 8.10 -2.39 -0.02 1.25 16 38 H 0.06 1.77 8.10 -2.39 -0.02 1.75 16 39 H 0.13 1.41 8.10 -2.39 -0.02 1.39 16 40 H 0.12 1.63 8.10 -2.38 -0.02 1.61 16 41 H 0.14 2.32 7.73 -2.91 -0.02 2.30 16 42 H 0.17 0.77 8.06 -2.91 -0.02 0.75 16 43 H 0.19 0.85 8.06 -2.91 -0.02 0.83 16 44 H 0.19 1.70 7.08 -2.91 -0.02 1.68 16 Total: -1.00 -73.27 365.97 2.45 -70.81 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: 0.39 Total: 18.80 kcal Atomic # 6 Polarization: -33.03 SS G_CDS: 4.91 Total: -28.12 kcal Atomic # 7 Polarization: -89.19 SS G_CDS: -4.83 Total: -94.02 kcal Atomic # 8 Polarization: -14.50 SS G_CDS: -0.05 Total: -14.55 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.07 kcal Total: -73.27 2.45 -70.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172490679.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.636 kcal (2) G-P(sol) polarization free energy of solvation -73.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds