Wall clock time and date at job start Tue Mar 31 2020 07:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.46753 * 2 1 4 4 C 1.52996 * 109.47194 * 120.00051 * 2 1 3 5 5 C 1.52997 * 109.46947 * 184.99869 * 4 2 1 6 6 C 1.50706 * 109.47238 * 179.97438 * 5 4 2 7 7 H 1.07999 * 119.99515 * 0.02562 * 6 5 4 8 8 C 1.37870 * 120.00176 * 180.02562 * 6 5 4 9 9 N 1.31520 * 119.99883 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00043 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47293 * 89.99746 * 10 8 6 12 12 H 1.48504 * 109.47104 * 209.99992 * 10 8 6 13 13 H 1.48495 * 109.47249 * 329.99739 * 10 8 6 14 14 N 1.46900 * 109.46845 * 239.99882 * 2 1 3 15 15 C 1.46906 * 111.00040 * 85.00043 * 14 2 1 16 16 C 1.52994 * 109.47254 * 180.02562 * 15 14 2 17 17 C 1.52997 * 109.47214 * 179.97438 * 16 15 14 18 18 C 1.50701 * 109.47059 * 179.97438 * 17 16 15 19 19 O 1.21254 * 120.00241 * 359.97438 * 18 17 16 20 20 C 1.47166 * 119.99939 * 180.02562 * 18 17 16 21 21 C 1.40303 * 120.58712 * 179.71969 * 20 18 17 22 22 C 1.38288 * 118.26220 * 179.75982 * 21 20 18 23 23 C 1.38400 * 119.32954 * 0.53852 * 22 21 20 24 24 N 1.31948 * 121.14280 * 359.69677 * 23 22 21 25 25 C 1.31650 * 121.91148 * 0.02916 * 24 23 22 26 26 H 1.08992 * 109.47388 * 60.00185 * 1 2 3 27 27 H 1.09009 * 109.46555 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.46824 * 299.99940 * 1 2 3 29 29 H 1.09001 * 109.47372 * 65.00179 * 4 2 1 30 30 H 1.09004 * 109.47108 * 304.99923 * 4 2 1 31 31 H 1.09001 * 109.46832 * 59.99979 * 5 4 2 32 32 H 1.09000 * 109.47611 * 300.00276 * 5 4 2 33 33 H 0.97004 * 119.99507 * 180.02562 * 9 8 6 34 34 H 1.00901 * 111.00620 * 321.04668 * 14 2 1 35 35 H 1.09006 * 109.46766 * 299.99489 * 15 14 2 36 36 H 1.08994 * 109.46966 * 59.99635 * 15 14 2 37 37 H 1.09005 * 109.47102 * 299.99848 * 16 15 14 38 38 H 1.09003 * 109.47452 * 59.99307 * 16 15 14 39 39 H 1.08997 * 109.47371 * 299.99838 * 17 16 15 40 40 H 1.09006 * 109.46944 * 60.00026 * 17 16 15 41 41 H 1.07991 * 120.86364 * 0.02562 * 21 20 18 42 42 H 1.08002 * 120.33144 * 180.26162 * 22 21 20 43 43 H 1.08000 * 119.42372 * 179.72128 * 23 22 21 44 44 H 1.07993 * 119.73645 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5649 -0.6133 1.3136 6 6 4.0673 -1.3232 2.5444 7 1 3.3688 -1.8036 3.2135 8 6 5.4184 -1.3592 2.8162 9 7 6.2689 -0.7736 2.0016 10 14 6.0412 -2.2397 4.3414 11 1 6.3219 -3.6605 4.0129 12 1 7.2871 -1.5860 4.8164 13 1 5.0097 -2.1727 5.4075 14 7 2.0197 -0.6925 -1.1994 15 6 2.0825 0.2226 -2.3470 16 6 2.5949 -0.5332 -3.5745 17 6 2.6597 0.4197 -4.7698 18 6 3.1651 -0.3246 -5.9788 19 8 3.4462 -1.5010 -5.8928 20 6 3.3185 0.3766 -7.2635 21 6 3.7935 -0.3029 -8.3954 22 6 3.9142 0.4015 -9.5793 23 6 3.5768 1.7435 -9.6070 24 7 3.1371 2.3591 -8.5260 25 6 2.9990 1.7329 -7.3762 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.7518 -1.7715 1.2056 30 1 1.6055 -0.2617 2.1370 31 1 3.8532 0.4370 1.3572 32 1 3.9995 -1.0727 0.4258 33 1 7.2196 -0.7994 2.1927 34 1 1.4496 -1.4980 -1.4101 35 1 1.0870 0.6162 -2.5526 36 1 2.7588 1.0461 -2.1183 37 1 3.5903 -0.9273 -3.3692 38 1 1.9182 -1.3566 -3.8030 39 1 1.6642 0.8134 -4.9750 40 1 3.3363 1.2433 -4.5415 41 1 4.0539 -1.3497 -8.3445 42 1 4.2723 -0.0895 -10.4721 43 1 3.6747 2.2962 -10.5297 44 1 2.6364 2.2714 -6.5131 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172490685.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:52:28 Heat of formation + Delta-G solvation = -26.107527 kcal Electronic energy + Delta-G solvation = -21703.866859 eV Core-core repulsion = 18427.297453 eV Total energy + Delta-G solvation = -3276.569406 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -40.85725 -39.18332 -37.35776 -34.37484 -32.96263 -32.90795 -32.14147 -30.52942 -28.91558 -26.50955 -25.03926 -24.34993 -23.70301 -21.56775 -21.24260 -20.20469 -19.56936 -17.81599 -16.83993 -16.53350 -16.08095 -16.02504 -15.38829 -14.86897 -14.79456 -14.43033 -14.36389 -14.12027 -13.75032 -13.57069 -13.08339 -12.77396 -12.69146 -12.42877 -12.29959 -12.03200 -11.68613 -11.38327 -11.22915 -11.05429 -10.79212 -10.72282 -10.41295 -10.38067 -10.31402 -10.10473 -9.75640 -9.64889 -9.58468 -9.16655 -8.86129 -8.19516 -7.82601 -5.84837 -3.85760 0.08608 0.76261 2.07327 3.37998 3.39921 3.45652 3.48923 3.53719 3.97903 4.31025 4.42101 4.47568 4.51259 4.57278 4.77237 4.92598 4.93885 5.07796 5.21151 5.37785 5.42061 5.45386 5.50586 5.51991 5.56108 5.65905 5.71478 5.77300 5.80029 6.09753 6.10023 6.22769 6.30898 6.37641 6.47361 6.72303 6.93447 7.20638 7.35637 7.41352 7.56406 7.86106 7.88991 8.12296 8.28095 8.61808 9.23405 9.76628 11.26285 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.019427 B = 0.002468 C = 0.002290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.926684 B =11341.267208 C =12221.676621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.084 3.916 3 H 0.071 0.929 4 C -0.099 4.099 5 C 0.029 3.971 6 C -0.517 4.517 7 H 0.050 0.950 8 C 0.055 3.945 9 N -0.895 5.895 10 Si 0.887 3.113 11 H -0.282 1.282 12 H -0.288 1.288 13 H -0.276 1.276 14 N -0.672 5.672 15 C 0.062 3.938 16 C -0.110 4.110 17 C -0.164 4.164 18 C 0.399 3.601 19 O -0.441 6.441 20 C -0.220 4.220 21 C -0.021 4.021 22 C -0.185 4.185 23 C 0.123 3.877 24 N -0.492 5.492 25 C 0.147 3.853 26 H 0.043 0.957 27 H 0.053 0.947 28 H 0.058 0.942 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.006 0.994 32 H 0.033 0.967 33 H 0.258 0.742 34 H 0.335 0.665 35 H 0.021 0.979 36 H 0.072 0.928 37 H 0.082 0.918 38 H 0.064 0.936 39 H 0.099 0.901 40 H 0.104 0.896 41 H 0.145 0.855 42 H 0.142 0.858 43 H 0.161 0.839 44 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.541 5.471 -23.555 25.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.025 4.025 3 H 0.089 0.911 4 C -0.137 4.137 5 C -0.008 4.008 6 C -0.556 4.556 7 H 0.069 0.931 8 C -0.145 4.145 9 N -0.535 5.535 10 Si 0.715 3.285 11 H -0.208 1.208 12 H -0.214 1.214 13 H -0.201 1.201 14 N -0.302 5.302 15 C -0.068 4.068 16 C -0.147 4.147 17 C -0.202 4.202 18 C 0.275 3.725 19 O -0.315 6.315 20 C -0.223 4.223 21 C -0.047 4.047 22 C -0.204 4.204 23 C -0.033 4.033 24 N -0.201 5.201 25 C -0.011 4.011 26 H 0.062 0.938 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.025 0.975 32 H 0.051 0.949 33 H 0.067 0.933 34 H 0.152 0.848 35 H 0.039 0.961 36 H 0.091 0.909 37 H 0.101 0.899 38 H 0.083 0.917 39 H 0.117 0.883 40 H 0.122 0.878 41 H 0.163 0.837 42 H 0.160 0.840 43 H 0.178 0.822 44 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -8.746 5.848 -23.413 25.669 hybrid contribution -0.278 -1.170 0.566 1.329 sum -9.024 4.678 -22.848 25.007 Atomic orbital electron populations 1.22540 0.98711 1.01503 1.01182 1.21731 0.90827 0.98329 0.91655 0.91064 1.21634 1.00621 0.98385 0.93059 1.18997 0.88317 0.96443 0.97026 1.21358 0.91847 1.33948 1.08445 0.93125 1.25003 0.97158 0.95812 0.96531 1.69984 1.02122 1.44393 1.37002 0.86680 0.78243 0.79856 0.83695 1.20791 1.21380 1.20061 1.60470 1.57716 1.09036 1.03019 1.21942 0.98507 0.95943 0.90405 1.21384 1.03900 0.97384 0.92076 1.22029 1.03339 1.00740 0.94121 1.22427 0.73832 0.88022 0.88192 1.90561 1.37721 1.17257 1.85972 1.21712 1.06564 0.96931 0.97044 1.21942 0.90677 1.00834 0.91230 1.22193 1.02929 0.96116 0.99191 1.23077 0.91263 0.92081 0.96844 1.67752 1.13583 1.39319 0.99433 1.23257 0.91786 0.90359 0.95712 0.93785 0.92820 0.92298 0.93504 0.93575 0.97536 0.94896 0.93280 0.84767 0.96087 0.90945 0.89934 0.91686 0.88311 0.87778 0.83702 0.84040 0.82205 0.81572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.44 9.16 37.16 0.34 -2.10 16 2 C 0.08 1.42 2.59 -67.71 -0.18 1.25 16 3 H 0.07 1.25 7.80 -51.93 -0.41 0.84 16 4 C -0.10 -2.09 4.83 -26.73 -0.13 -2.21 16 5 C 0.03 0.78 4.86 -27.88 -0.14 0.65 16 6 C -0.52 -15.22 9.11 -34.44 -0.31 -15.53 16 7 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 8 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 9 N -0.90 -27.87 13.29 55.43 0.74 -27.13 16 10 Si 0.89 22.39 29.54 -169.99 -5.02 17.37 16 11 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 13 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 14 N -0.67 -10.92 5.70 -106.72 -0.61 -11.53 16 15 C 0.06 0.80 5.48 -3.82 -0.02 0.78 16 16 C -0.11 -1.32 4.76 -26.74 -0.13 -1.45 16 17 C -0.16 -1.44 4.34 -27.88 -0.12 -1.56 16 18 C 0.40 4.18 7.12 -30.68 -0.22 3.96 16 19 O -0.44 -6.14 16.05 5.58 0.09 -6.05 16 20 C -0.22 -1.98 5.89 -104.91 -0.62 -2.59 16 21 C -0.02 -0.17 9.72 -38.79 -0.38 -0.55 16 22 C -0.18 -1.16 10.10 -39.50 -0.40 -1.56 16 23 C 0.12 0.84 11.17 -17.44 -0.19 0.64 16 24 N -0.49 -4.36 10.34 -12.83 -0.13 -4.49 16 25 C 0.15 1.19 10.65 -17.04 -0.18 1.01 16 26 H 0.04 0.52 7.45 -51.93 -0.39 0.14 16 27 H 0.05 0.70 8.13 -51.92 -0.42 0.28 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 30 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 32 H 0.03 0.95 7.75 -51.93 -0.40 0.55 16 33 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 34 H 0.33 4.99 8.47 -39.29 -0.33 4.65 16 35 H 0.02 0.24 7.44 -51.93 -0.39 -0.15 16 36 H 0.07 1.00 8.05 -51.93 -0.42 0.58 16 37 H 0.08 1.23 8.10 -51.93 -0.42 0.80 16 38 H 0.06 0.79 8.10 -51.93 -0.42 0.37 16 39 H 0.10 0.63 8.10 -51.93 -0.42 0.21 16 40 H 0.10 0.78 8.10 -51.93 -0.42 0.36 16 41 H 0.15 1.14 7.73 -52.49 -0.41 0.73 16 42 H 0.14 0.50 8.06 -52.49 -0.42 0.08 16 43 H 0.16 0.61 8.06 -52.49 -0.42 0.19 16 44 H 0.17 0.94 7.08 -52.49 -0.37 0.56 16 LS Contribution 368.51 15.07 5.55 5.55 Total: -1.00 -34.69 368.51 -9.44 -44.13 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -7.29 Total: -0.12 kcal Atomic # 6 Polarization: -14.96 SS G_CDS: -2.77 Total: -17.73 kcal Atomic # 7 Polarization: -43.15 SS G_CDS: 0.00 Total: -43.15 kcal Atomic # 8 Polarization: -6.14 SS G_CDS: 0.09 Total: -6.05 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.69 -9.44 -44.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172490685.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.027 kcal (2) G-P(sol) polarization free energy of solvation -34.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds