Wall clock time and date at job start Tue Mar 31 2020 07:52:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.46753 * 2 1 4 4 C 1.52996 * 109.47194 * 120.00051 * 2 1 3 5 5 C 1.52997 * 109.46947 * 184.99869 * 4 2 1 6 6 C 1.50706 * 109.47238 * 179.97438 * 5 4 2 7 7 H 1.07999 * 119.99515 * 0.02562 * 6 5 4 8 8 C 1.37870 * 120.00176 * 180.02562 * 6 5 4 9 9 N 1.31520 * 119.99883 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00043 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47293 * 89.99746 * 10 8 6 12 12 H 1.48504 * 109.47104 * 209.99992 * 10 8 6 13 13 H 1.48495 * 109.47249 * 329.99739 * 10 8 6 14 14 N 1.46900 * 109.46845 * 239.99882 * 2 1 3 15 15 C 1.46906 * 111.00040 * 85.00043 * 14 2 1 16 16 C 1.52994 * 109.47254 * 180.02562 * 15 14 2 17 17 C 1.52997 * 109.47214 * 179.97438 * 16 15 14 18 18 C 1.50701 * 109.47059 * 179.97438 * 17 16 15 19 19 O 1.21254 * 120.00241 * 359.97438 * 18 17 16 20 20 C 1.47166 * 119.99939 * 180.02562 * 18 17 16 21 21 C 1.40303 * 120.58712 * 179.71969 * 20 18 17 22 22 C 1.38288 * 118.26220 * 179.75982 * 21 20 18 23 23 C 1.38400 * 119.32954 * 0.53852 * 22 21 20 24 24 N 1.31948 * 121.14280 * 359.69677 * 23 22 21 25 25 C 1.31650 * 121.91148 * 0.02916 * 24 23 22 26 26 H 1.08992 * 109.47388 * 60.00185 * 1 2 3 27 27 H 1.09009 * 109.46555 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.46824 * 299.99940 * 1 2 3 29 29 H 1.09001 * 109.47372 * 65.00179 * 4 2 1 30 30 H 1.09004 * 109.47108 * 304.99923 * 4 2 1 31 31 H 1.09001 * 109.46832 * 59.99979 * 5 4 2 32 32 H 1.09000 * 109.47611 * 300.00276 * 5 4 2 33 33 H 0.97004 * 119.99507 * 180.02562 * 9 8 6 34 34 H 1.00901 * 111.00620 * 321.04668 * 14 2 1 35 35 H 1.09006 * 109.46766 * 299.99489 * 15 14 2 36 36 H 1.08994 * 109.46966 * 59.99635 * 15 14 2 37 37 H 1.09005 * 109.47102 * 299.99848 * 16 15 14 38 38 H 1.09003 * 109.47452 * 59.99307 * 16 15 14 39 39 H 1.08997 * 109.47371 * 299.99838 * 17 16 15 40 40 H 1.09006 * 109.46944 * 60.00026 * 17 16 15 41 41 H 1.07991 * 120.86364 * 0.02562 * 21 20 18 42 42 H 1.08002 * 120.33144 * 180.26162 * 22 21 20 43 43 H 1.08000 * 119.42372 * 179.72128 * 23 22 21 44 44 H 1.07993 * 119.73645 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5649 -0.6133 1.3136 6 6 4.0673 -1.3232 2.5444 7 1 3.3688 -1.8036 3.2135 8 6 5.4184 -1.3592 2.8162 9 7 6.2689 -0.7736 2.0016 10 14 6.0412 -2.2397 4.3414 11 1 6.3219 -3.6605 4.0129 12 1 7.2871 -1.5860 4.8164 13 1 5.0097 -2.1727 5.4075 14 7 2.0197 -0.6925 -1.1994 15 6 2.0825 0.2226 -2.3470 16 6 2.5949 -0.5332 -3.5745 17 6 2.6597 0.4197 -4.7698 18 6 3.1651 -0.3246 -5.9788 19 8 3.4462 -1.5010 -5.8928 20 6 3.3185 0.3766 -7.2635 21 6 3.7935 -0.3029 -8.3954 22 6 3.9142 0.4015 -9.5793 23 6 3.5768 1.7435 -9.6070 24 7 3.1371 2.3591 -8.5260 25 6 2.9990 1.7329 -7.3762 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.7518 -1.7715 1.2056 30 1 1.6055 -0.2617 2.1370 31 1 3.8532 0.4370 1.3572 32 1 3.9995 -1.0727 0.4258 33 1 7.2196 -0.7994 2.1927 34 1 1.4496 -1.4980 -1.4101 35 1 1.0870 0.6162 -2.5526 36 1 2.7588 1.0461 -2.1183 37 1 3.5903 -0.9273 -3.3692 38 1 1.9182 -1.3566 -3.8030 39 1 1.6642 0.8134 -4.9750 40 1 3.3363 1.2433 -4.5415 41 1 4.0539 -1.3497 -8.3445 42 1 4.2723 -0.0895 -10.4721 43 1 3.6747 2.2962 -10.5297 44 1 2.6364 2.2714 -6.5131 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172490685.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:52:25 Heat of formation + Delta-G solvation = -48.391667 kcal Electronic energy + Delta-G solvation = -21704.833172 eV Core-core repulsion = 18427.297453 eV Total energy + Delta-G solvation = -3277.535719 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 3.01 seconds Orbital eigenvalues (eV) -41.51505 -39.96540 -38.66467 -35.77653 -34.71305 -33.57176 -32.98510 -31.98091 -30.32818 -27.44259 -26.92118 -25.10528 -24.37727 -23.16851 -22.45824 -21.34382 -20.76038 -18.43720 -18.34399 -17.52847 -17.18252 -16.93891 -16.55384 -16.44985 -15.93977 -15.60721 -15.15077 -15.05787 -14.75774 -14.50368 -14.24889 -14.15637 -13.99530 -13.67032 -13.25330 -13.17609 -13.09973 -12.89374 -12.83610 -12.40366 -12.34155 -12.25083 -11.80281 -11.65063 -11.51669 -11.20174 -11.01841 -10.99449 -10.91394 -10.48435 -10.44492 -10.21594 -9.06390 -8.13601 -6.24097 -0.54688 0.19778 1.34916 1.39203 1.41421 1.52013 2.43689 2.78807 2.80816 3.18439 3.36246 3.52675 3.75873 3.83687 3.94596 4.02790 4.05321 4.11290 4.22779 4.36605 4.41418 4.47694 4.58659 4.62767 4.74976 4.75466 4.79893 4.81224 4.98443 5.00503 5.05039 5.11648 5.16563 5.24644 5.31822 5.36573 5.49177 5.58063 5.59730 5.90413 6.03896 6.34166 6.36003 6.43844 6.68232 6.85066 6.96134 7.43917 8.97759 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.019427 B = 0.002468 C = 0.002290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.926684 B =11341.267208 C =12221.676621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.091 3.909 3 H 0.062 0.938 4 C -0.090 4.090 5 C 0.038 3.962 6 C -0.543 4.543 7 H 0.055 0.945 8 C -0.004 4.004 9 N -0.934 5.934 10 Si 0.962 3.038 11 H -0.274 1.274 12 H -0.282 1.282 13 H -0.263 1.263 14 N -0.701 5.701 15 C 0.067 3.933 16 C -0.102 4.102 17 C -0.159 4.159 18 C 0.403 3.597 19 O -0.489 6.489 20 C -0.237 4.237 21 C -0.037 4.037 22 C -0.179 4.179 23 C 0.123 3.877 24 N -0.516 5.516 25 C 0.148 3.852 26 H 0.066 0.934 27 H 0.059 0.941 28 H 0.064 0.936 29 H 0.044 0.956 30 H 0.050 0.950 31 H -0.023 1.023 32 H 0.001 0.999 33 H 0.261 0.739 34 H 0.341 0.659 35 H 0.052 0.948 36 H 0.061 0.939 37 H 0.043 0.957 38 H 0.061 0.939 39 H 0.134 0.866 40 H 0.121 0.879 41 H 0.140 0.860 42 H 0.171 0.829 43 H 0.191 0.809 44 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.954 6.225 -24.214 27.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.019 4.019 3 H 0.081 0.919 4 C -0.128 4.128 5 C 0.001 3.999 6 C -0.581 4.581 7 H 0.074 0.926 8 C -0.201 4.201 9 N -0.574 5.574 10 Si 0.787 3.213 11 H -0.200 1.200 12 H -0.207 1.207 13 H -0.187 1.187 14 N -0.333 5.333 15 C -0.062 4.062 16 C -0.141 4.141 17 C -0.196 4.196 18 C 0.283 3.717 19 O -0.367 6.367 20 C -0.240 4.240 21 C -0.063 4.063 22 C -0.198 4.198 23 C -0.032 4.032 24 N -0.225 5.225 25 C -0.010 4.010 26 H 0.085 0.915 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.063 0.937 30 H 0.068 0.932 31 H -0.004 1.004 32 H 0.020 0.980 33 H 0.069 0.931 34 H 0.160 0.840 35 H 0.070 0.930 36 H 0.080 0.920 37 H 0.062 0.938 38 H 0.080 0.920 39 H 0.152 0.848 40 H 0.139 0.861 41 H 0.158 0.842 42 H 0.188 0.812 43 H 0.208 0.792 44 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -10.182 6.618 -24.080 26.969 hybrid contribution 0.206 -1.377 0.681 1.550 sum -9.976 5.240 -23.399 25.971 Atomic orbital electron populations 1.22385 0.95316 1.02372 1.02613 1.21505 0.93372 0.96938 0.90057 0.91949 1.21482 0.96479 0.99040 0.95840 1.18823 0.92304 0.93836 0.94915 1.21832 0.92525 1.34310 1.09411 0.92643 1.25985 0.97441 0.96556 1.00111 1.70131 1.02535 1.45663 1.39101 0.85496 0.77839 0.78543 0.79442 1.19981 1.20712 1.18701 1.60357 1.58607 1.10231 1.04059 1.21931 0.99868 0.95048 0.89363 1.21255 1.01465 0.98060 0.93273 1.22053 1.05674 1.00011 0.91849 1.22793 0.72292 0.87399 0.89257 1.90549 1.40214 1.19183 1.86707 1.21646 1.08278 0.97545 0.96552 1.22125 0.91046 1.01005 0.92093 1.22487 1.01928 0.96003 0.99368 1.23648 0.89756 0.92445 0.97383 1.67824 1.14563 1.39942 1.00125 1.23566 0.91133 0.89875 0.96385 0.91475 0.92232 0.91723 0.93678 0.93160 1.00428 0.98023 0.93056 0.84039 0.92992 0.92033 0.93787 0.91976 0.84802 0.86133 0.84210 0.81186 0.79227 0.79439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.12 9.16 71.98 0.66 -3.46 16 2 C 0.09 3.03 2.59 44.92 0.12 3.15 16 3 H 0.06 2.17 7.80 -2.39 -0.02 2.16 16 4 C -0.09 -3.85 4.83 30.59 0.15 -3.70 16 5 C 0.04 2.13 4.86 29.85 0.15 2.28 16 6 C -0.54 -32.54 9.11 25.60 0.23 -32.31 16 7 H 0.06 3.19 7.74 -2.91 -0.02 3.16 16 8 C 0.00 -0.23 5.46 84.65 0.46 0.23 16 9 N -0.93 -59.60 13.29 21.45 0.28 -59.32 16 10 Si 0.96 46.25 29.54 68.60 2.03 48.28 16 11 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 12 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 13 H -0.26 -12.00 7.11 99.48 0.71 -11.29 16 14 N -0.70 -22.89 5.70 -491.56 -2.80 -25.69 16 15 C 0.07 1.69 5.48 86.30 0.47 2.17 16 16 C -0.10 -2.51 4.76 30.59 0.15 -2.36 16 17 C -0.16 -2.62 4.34 29.85 0.13 -2.49 16 18 C 0.40 8.53 7.12 28.03 0.20 8.73 16 19 O -0.49 -14.42 16.05 -2.95 -0.05 -14.46 16 20 C -0.24 -4.17 5.89 -20.05 -0.12 -4.28 16 21 C -0.04 -0.60 9.72 22.78 0.22 -0.38 16 22 C -0.18 -1.94 10.10 22.32 0.23 -1.71 16 23 C 0.12 1.40 11.17 84.71 0.95 2.34 16 24 N -0.52 -8.18 10.34 -194.51 -2.01 -10.19 16 25 C 0.15 2.17 10.65 85.10 0.91 3.08 16 26 H 0.07 1.36 7.45 -2.39 -0.02 1.34 16 27 H 0.06 1.40 8.13 -2.38 -0.02 1.38 16 28 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.05 2.06 8.14 -2.38 -0.02 2.05 16 31 H -0.02 -1.37 8.14 -2.39 -0.02 -1.39 16 32 H 0.00 0.08 7.75 -2.39 -0.02 0.06 16 33 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 34 H 0.34 10.10 8.47 -89.69 -0.76 9.34 16 35 H 0.05 1.02 7.44 -2.38 -0.02 1.01 16 36 H 0.06 1.69 8.05 -2.39 -0.02 1.67 16 37 H 0.04 1.40 8.10 -2.38 -0.02 1.38 16 38 H 0.06 1.54 8.10 -2.39 -0.02 1.52 16 39 H 0.13 1.31 8.10 -2.39 -0.02 1.29 16 40 H 0.12 1.63 8.10 -2.38 -0.02 1.62 16 41 H 0.14 2.32 7.73 -2.92 -0.02 2.29 16 42 H 0.17 0.77 8.06 -2.91 -0.02 0.75 16 43 H 0.19 0.85 8.06 -2.91 -0.02 0.83 16 44 H 0.19 1.68 7.08 -2.91 -0.02 1.66 16 Total: -1.00 -78.15 368.51 2.55 -75.59 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: 0.21 Total: 14.51 kcal Atomic # 6 Polarization: -33.61 SS G_CDS: 4.89 Total: -28.72 kcal Atomic # 7 Polarization: -90.67 SS G_CDS: -4.53 Total: -95.20 kcal Atomic # 8 Polarization: -14.42 SS G_CDS: -0.05 Total: -14.46 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.28 kcal Total: -78.15 2.55 -75.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172490685.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.203 kcal (2) G-P(sol) polarization free energy of solvation -78.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.01 seconds