Wall clock time and date at job start Tue Mar 31 2020 07:51:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.46897 * 2 1 4 4 C 1.52994 * 109.47452 * 120.00055 * 2 1 3 5 5 C 1.53001 * 109.47367 * 185.00275 * 4 2 1 6 6 C 1.50697 * 109.46995 * 180.02562 * 5 4 2 7 7 H 1.07991 * 120.00449 * 359.72153 * 6 5 4 8 8 C 1.37885 * 119.99686 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99913 * 359.72095 * 8 6 5 10 10 Si 1.86798 * 119.99766 * 179.72528 * 8 6 5 11 11 H 1.48490 * 109.47339 * 359.97438 * 10 8 6 12 12 H 1.48493 * 109.47239 * 120.00108 * 10 8 6 13 13 H 1.48504 * 109.46636 * 239.99667 * 10 8 6 14 14 N 1.46501 * 109.46911 * 240.00152 * 2 1 3 15 15 C 1.38309 * 119.99826 * 84.99891 * 14 2 1 16 16 C 1.41144 * 120.53963 * 359.71973 * 15 14 2 17 17 C 1.34924 * 119.76934 * 179.76140 * 16 15 14 18 18 N 1.35962 * 120.89701 * 0.49985 * 17 16 15 19 19 C 1.46507 * 119.43349 * 179.75259 * 18 17 16 20 20 C 1.52995 * 109.47007 * 270.02043 * 19 18 17 21 21 C 1.53001 * 117.50320 * 243.74888 * 20 19 18 22 22 C 1.53006 * 117.49707 * 175.08875 * 20 19 18 23 23 C 1.34581 * 121.13042 * 359.77657 * 18 17 16 24 24 O 1.22139 * 119.91436 * 179.97438 * 23 18 17 25 25 C 1.38554 * 120.53749 * 179.97438 * 15 14 2 26 26 H 1.08994 * 109.47486 * 59.99898 * 1 2 3 27 27 H 1.09007 * 109.46897 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47060 * 299.99569 * 1 2 3 29 29 H 1.08998 * 109.47353 * 65.00053 * 4 2 1 30 30 H 1.09006 * 109.47395 * 305.00309 * 4 2 1 31 31 H 1.08998 * 109.47065 * 59.99602 * 5 4 2 32 32 H 1.09001 * 109.46892 * 299.99866 * 5 4 2 33 33 H 0.97000 * 119.99651 * 180.02562 * 9 8 6 34 34 H 0.96995 * 120.00500 * 264.99246 * 14 2 1 35 35 H 1.07998 * 120.11183 * 0.02562 * 16 15 14 36 36 H 1.07994 * 119.55283 * 180.23263 * 17 16 15 37 37 H 1.08998 * 109.47296 * 30.02612 * 19 18 17 38 38 H 1.09007 * 109.46881 * 150.02341 * 19 18 17 39 39 H 1.09004 * 115.55085 * 29.42278 * 20 19 18 40 40 H 1.09006 * 117.49212 * 359.97438 * 21 20 19 41 41 H 1.09001 * 117.50523 * 145.02404 * 21 20 19 42 42 H 1.08998 * 117.49845 * 214.98078 * 22 20 19 43 43 H 1.08997 * 117.49804 * 359.97438 * 22 20 19 44 44 H 1.08002 * 120.44988 * 359.94956 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5649 -0.6132 1.3136 6 6 4.0673 -1.3241 2.5437 7 1 3.3686 -1.8011 3.2150 8 6 5.4187 -1.3612 2.8149 9 7 6.2696 -0.7808 1.9971 10 14 6.0408 -2.2359 4.3437 11 1 4.8904 -2.8021 5.0927 12 1 6.9614 -3.3314 3.9471 13 1 6.7652 -1.2687 5.2069 14 7 2.0183 -0.6906 -1.1962 15 6 2.1503 -0.0006 -2.3876 16 6 1.8124 1.3676 -2.4652 17 6 1.9518 2.0268 -3.6342 18 7 2.4052 1.3887 -4.7458 19 6 2.5391 2.1343 -5.9998 20 6 1.2310 2.0453 -6.7882 21 6 1.2693 1.3350 -8.1428 22 6 1.1284 2.8580 -8.0805 23 6 2.7326 0.0837 -4.7141 24 8 3.1372 -0.4676 -5.7261 25 6 2.6115 -0.6425 -3.5255 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 1.7518 -1.7715 1.2055 30 1 1.6055 -0.2618 2.1370 31 1 3.8532 0.4371 1.3572 32 1 3.9995 -1.0727 0.4259 33 1 7.2204 -0.8073 2.1878 34 1 2.2491 -1.6317 -1.1527 35 1 1.4475 1.8861 -1.5909 36 1 1.6957 3.0746 -3.6887 37 1 2.7605 3.1786 -5.7797 38 1 3.3495 1.7080 -6.5912 39 1 0.3271 1.9371 -6.1886 40 1 2.2268 0.9315 -8.4724 41 1 0.3906 0.7598 -8.4346 42 1 0.1570 3.2841 -8.3313 43 1 1.9927 3.4563 -8.3687 44 1 2.8741 -1.6896 -3.4948 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172491595.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:26 Heat of formation + Delta-G solvation = 5.458957 kcal Electronic energy + Delta-G solvation = -22669.000851 eV Core-core repulsion = 19393.800270 eV Total energy + Delta-G solvation = -3275.200580 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.05802 -38.23633 -37.37295 -36.13834 -34.23190 -32.78176 -30.83887 -29.76496 -28.86098 -26.98601 -25.21087 -23.69720 -22.57352 -22.49280 -21.36443 -20.84429 -20.14678 -17.69580 -17.17810 -16.87836 -16.27328 -15.75768 -15.43717 -15.01898 -14.75625 -14.50784 -14.12834 -13.75036 -13.47604 -13.26563 -13.07838 -12.80348 -12.56453 -12.32453 -12.11831 -11.91858 -11.74130 -11.54711 -11.44112 -11.24565 -10.98846 -10.90916 -10.60300 -10.49926 -10.39119 -10.24378 -9.93597 -9.57301 -9.39783 -9.10280 -8.40055 -8.08265 -7.36497 -6.03927 -4.07348 1.25565 2.31020 2.82099 3.27984 3.35992 3.39089 3.54771 3.64315 4.01803 4.41878 4.45627 4.56863 4.61108 4.73523 5.00537 5.04817 5.16765 5.27130 5.31926 5.35125 5.38308 5.41749 5.42972 5.56012 5.64788 5.70679 5.84143 5.87645 5.95071 5.99607 6.05466 6.21736 6.29249 6.38224 6.50105 6.59769 6.63261 6.95971 7.43014 7.52432 7.61940 7.73949 7.89027 7.95055 8.35870 8.51385 9.00196 9.57419 11.06877 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.025916 B = 0.003000 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.140530 B = 9331.257849 C = 9874.575408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.136 3.864 3 H 0.080 0.920 4 C -0.120 4.120 5 C 0.023 3.977 6 C -0.525 4.525 7 H 0.055 0.945 8 C 0.057 3.943 9 N -0.892 5.892 10 Si 0.890 3.110 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.284 1.284 14 N -0.701 5.701 15 C 0.311 3.689 16 C -0.254 4.254 17 C 0.151 3.849 18 N -0.512 5.512 19 C 0.126 3.874 20 C -0.171 4.171 21 C -0.167 4.167 22 C -0.175 4.175 23 C 0.538 3.462 24 O -0.576 6.576 25 C -0.375 4.375 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.064 0.936 29 H 0.054 0.946 30 H 0.065 0.935 31 H 0.014 0.986 32 H 0.020 0.980 33 H 0.260 0.740 34 H 0.407 0.593 35 H 0.145 0.855 36 H 0.158 0.842 37 H 0.089 0.911 38 H 0.098 0.902 39 H 0.106 0.894 40 H 0.100 0.900 41 H 0.092 0.908 42 H 0.095 0.905 43 H 0.096 0.904 44 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.212 9.561 -13.999 21.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.031 3.969 3 H 0.098 0.902 4 C -0.158 4.158 5 C -0.014 4.014 6 C -0.563 4.563 7 H 0.073 0.927 8 C -0.144 4.144 9 N -0.531 5.531 10 Si 0.718 3.282 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.210 1.210 14 N -0.323 5.323 15 C 0.195 3.805 16 C -0.280 4.280 17 C 0.024 3.976 18 N -0.224 5.224 19 C 0.004 3.996 20 C -0.190 4.190 21 C -0.204 4.204 22 C -0.213 4.213 23 C 0.344 3.656 24 O -0.461 6.461 25 C -0.405 4.405 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.032 0.968 32 H 0.038 0.962 33 H 0.070 0.930 34 H 0.243 0.757 35 H 0.163 0.837 36 H 0.176 0.824 37 H 0.107 0.893 38 H 0.116 0.884 39 H 0.124 0.876 40 H 0.118 0.882 41 H 0.111 0.889 42 H 0.113 0.887 43 H 0.114 0.886 44 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -12.835 9.360 -14.472 21.489 hybrid contribution 0.520 -0.804 1.107 1.463 sum -12.315 8.556 -13.365 20.087 Atomic orbital electron populations 1.22302 0.96294 1.02205 1.01634 1.21317 0.92645 0.97498 0.85415 0.90219 1.21971 1.00778 0.99057 0.93999 1.19094 0.87924 0.97202 0.97208 1.21267 0.91977 1.34692 1.08342 0.92705 1.25031 0.97132 0.95573 0.96671 1.69977 1.02362 1.43981 1.36762 0.86563 0.78881 0.79492 0.83225 1.19776 1.20998 1.21015 1.44901 1.67551 1.13043 1.06852 1.18228 0.85666 0.90488 0.86113 1.20452 1.14840 0.94128 0.98589 1.21551 0.92492 0.97887 0.85718 1.45455 1.55710 1.11623 1.09657 1.21397 0.97329 0.96274 0.84628 1.22615 0.99075 1.06559 0.90774 1.23023 1.03746 0.94191 0.99412 1.22981 1.03197 0.94614 1.00502 1.16416 0.79249 0.79809 0.90106 1.90890 1.51144 1.67856 1.36198 1.21222 1.25374 1.02197 0.91712 0.92836 0.92505 0.91732 0.92711 0.91633 0.96756 0.96209 0.93010 0.75704 0.83736 0.82444 0.89308 0.88351 0.87586 0.88192 0.88920 0.88663 0.88565 0.84523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.93 9.44 37.16 0.35 -1.58 16 2 C 0.14 1.97 2.27 -67.93 -0.15 1.82 16 3 H 0.08 1.16 6.51 -51.92 -0.34 0.82 16 4 C -0.12 -2.18 4.69 -26.73 -0.13 -2.31 16 5 C 0.02 0.55 4.86 -27.88 -0.14 0.42 16 6 C -0.52 -14.37 9.11 -34.44 -0.31 -14.68 16 7 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 8 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 9 N -0.89 -26.59 13.29 55.43 0.74 -25.86 16 10 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 11 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 13 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 14 N -0.70 -10.59 4.65 -52.01 -0.24 -10.83 16 15 C 0.31 4.66 6.66 -83.72 -0.56 4.10 16 16 C -0.25 -3.08 8.79 -39.66 -0.35 -3.43 16 17 C 0.15 1.56 10.26 -16.90 -0.17 1.39 16 18 N -0.51 -6.53 2.59 -120.08 -0.31 -6.84 16 19 C 0.13 1.27 5.60 -4.04 -0.02 1.25 16 20 C -0.17 -1.58 6.01 -90.62 -0.54 -2.13 16 21 C -0.17 -1.58 10.18 -26.69 -0.27 -1.85 16 22 C -0.18 -1.27 10.26 -26.69 -0.27 -1.54 16 23 C 0.54 9.19 7.38 -15.76 -0.12 9.07 16 24 O -0.58 -11.60 16.61 4.79 0.08 -11.52 16 25 C -0.38 -6.33 9.88 -38.88 -0.38 -6.71 16 26 H 0.05 0.57 7.71 -51.93 -0.40 0.17 16 27 H 0.06 0.67 8.14 -51.92 -0.42 0.25 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.02 0.51 7.75 -51.93 -0.40 0.11 16 33 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 34 H 0.41 6.28 8.61 -40.82 -0.35 5.93 16 35 H 0.15 1.50 6.23 -52.49 -0.33 1.18 16 36 H 0.16 0.95 8.03 -52.49 -0.42 0.53 16 37 H 0.09 0.62 8.00 -51.93 -0.42 0.21 16 38 H 0.10 1.16 7.10 -51.93 -0.37 0.79 16 39 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.10 1.04 8.03 -51.93 -0.42 0.62 16 41 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.14 2.38 8.06 -52.49 -0.42 1.95 16 LS Contribution 364.19 15.07 5.49 5.49 Total: -1.00 -33.50 364.19 -9.65 -43.15 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -7.21 Total: 4.69 kcal Atomic # 6 Polarization: -11.49 SS G_CDS: -3.17 Total: -14.66 kcal Atomic # 7 Polarization: -43.71 SS G_CDS: 0.18 Total: -43.53 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: 0.08 Total: -11.52 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.50 -9.65 -43.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172491595.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.606 kcal (2) G-P(sol) polarization free energy of solvation -33.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds