Wall clock time and date at job start Tue Mar 31 2020 07:51:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.46897 * 2 1 4 4 C 1.52994 * 109.47452 * 120.00055 * 2 1 3 5 5 C 1.53001 * 109.47367 * 185.00275 * 4 2 1 6 6 C 1.50697 * 109.46995 * 180.02562 * 5 4 2 7 7 H 1.07991 * 120.00449 * 359.72153 * 6 5 4 8 8 C 1.37885 * 119.99686 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99913 * 359.72095 * 8 6 5 10 10 Si 1.86798 * 119.99766 * 179.72528 * 8 6 5 11 11 H 1.48490 * 109.47339 * 359.97438 * 10 8 6 12 12 H 1.48493 * 109.47239 * 120.00108 * 10 8 6 13 13 H 1.48504 * 109.46636 * 239.99667 * 10 8 6 14 14 N 1.46501 * 109.46911 * 240.00152 * 2 1 3 15 15 C 1.38309 * 119.99826 * 84.99891 * 14 2 1 16 16 C 1.41144 * 120.53963 * 359.71973 * 15 14 2 17 17 C 1.34924 * 119.76934 * 179.76140 * 16 15 14 18 18 N 1.35962 * 120.89701 * 0.49985 * 17 16 15 19 19 C 1.46507 * 119.43349 * 179.75259 * 18 17 16 20 20 C 1.52995 * 109.47007 * 270.02043 * 19 18 17 21 21 C 1.53001 * 117.50320 * 243.74888 * 20 19 18 22 22 C 1.53006 * 117.49707 * 175.08875 * 20 19 18 23 23 C 1.34581 * 121.13042 * 359.77657 * 18 17 16 24 24 O 1.22139 * 119.91436 * 179.97438 * 23 18 17 25 25 C 1.38554 * 120.53749 * 179.97438 * 15 14 2 26 26 H 1.08994 * 109.47486 * 59.99898 * 1 2 3 27 27 H 1.09007 * 109.46897 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47060 * 299.99569 * 1 2 3 29 29 H 1.08998 * 109.47353 * 65.00053 * 4 2 1 30 30 H 1.09006 * 109.47395 * 305.00309 * 4 2 1 31 31 H 1.08998 * 109.47065 * 59.99602 * 5 4 2 32 32 H 1.09001 * 109.46892 * 299.99866 * 5 4 2 33 33 H 0.97000 * 119.99651 * 180.02562 * 9 8 6 34 34 H 0.96995 * 120.00500 * 264.99246 * 14 2 1 35 35 H 1.07998 * 120.11183 * 0.02562 * 16 15 14 36 36 H 1.07994 * 119.55283 * 180.23263 * 17 16 15 37 37 H 1.08998 * 109.47296 * 30.02612 * 19 18 17 38 38 H 1.09007 * 109.46881 * 150.02341 * 19 18 17 39 39 H 1.09004 * 115.55085 * 29.42278 * 20 19 18 40 40 H 1.09006 * 117.49212 * 359.97438 * 21 20 19 41 41 H 1.09001 * 117.50523 * 145.02404 * 21 20 19 42 42 H 1.08998 * 117.49845 * 214.98078 * 22 20 19 43 43 H 1.08997 * 117.49804 * 359.97438 * 22 20 19 44 44 H 1.08002 * 120.44988 * 359.94956 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5649 -0.6132 1.3136 6 6 4.0673 -1.3241 2.5437 7 1 3.3686 -1.8011 3.2150 8 6 5.4187 -1.3612 2.8149 9 7 6.2696 -0.7808 1.9971 10 14 6.0408 -2.2359 4.3437 11 1 4.8904 -2.8021 5.0927 12 1 6.9614 -3.3314 3.9471 13 1 6.7652 -1.2687 5.2069 14 7 2.0183 -0.6906 -1.1962 15 6 2.1503 -0.0006 -2.3876 16 6 1.8124 1.3676 -2.4652 17 6 1.9518 2.0268 -3.6342 18 7 2.4052 1.3887 -4.7458 19 6 2.5391 2.1343 -5.9998 20 6 1.2310 2.0453 -6.7882 21 6 1.2693 1.3350 -8.1428 22 6 1.1284 2.8580 -8.0805 23 6 2.7326 0.0837 -4.7141 24 8 3.1372 -0.4676 -5.7261 25 6 2.6115 -0.6425 -3.5255 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 1.7518 -1.7715 1.2055 30 1 1.6055 -0.2618 2.1370 31 1 3.8532 0.4371 1.3572 32 1 3.9995 -1.0727 0.4259 33 1 7.2204 -0.8073 2.1878 34 1 2.2491 -1.6317 -1.1527 35 1 1.4475 1.8861 -1.5909 36 1 1.6957 3.0746 -3.6887 37 1 2.7605 3.1786 -5.7797 38 1 3.3495 1.7080 -6.5912 39 1 0.3271 1.9371 -6.1886 40 1 2.2268 0.9315 -8.4724 41 1 0.3906 0.7598 -8.4346 42 1 0.1570 3.2841 -8.3313 43 1 1.9927 3.4563 -8.3687 44 1 2.8741 -1.6896 -3.4948 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172491595.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:26 Heat of formation + Delta-G solvation = -14.260533 kcal Electronic energy + Delta-G solvation = -22669.855952 eV Core-core repulsion = 19393.800270 eV Total energy + Delta-G solvation = -3276.055682 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.15446 -39.38812 -38.25159 -37.35194 -35.73722 -34.49782 -32.10967 -31.19092 -30.08074 -27.91434 -26.99345 -24.74079 -23.84574 -23.21066 -22.83670 -21.71822 -21.43940 -18.79474 -18.54804 -18.14186 -17.91929 -16.71983 -16.58370 -16.41867 -16.12549 -15.79942 -15.05716 -14.81610 -14.73238 -14.59777 -14.33590 -14.17481 -13.92496 -13.53982 -13.16002 -13.08505 -12.94556 -12.89974 -12.74698 -12.44427 -12.36711 -12.31340 -11.99821 -11.80918 -11.56272 -11.35729 -11.25199 -10.98567 -10.96137 -10.83111 -10.56104 -9.12825 -8.65054 -8.20152 -6.30902 0.22160 1.15986 1.38050 1.39261 1.51408 1.85430 2.39725 2.43700 2.83680 2.90199 3.13638 3.71508 3.79493 3.89701 3.95402 4.06469 4.16635 4.23636 4.28387 4.32337 4.39040 4.45882 4.64649 4.70031 4.73840 4.77321 4.80507 4.95487 4.99614 5.02016 5.09799 5.18090 5.23803 5.25566 5.27007 5.31663 5.44073 5.53398 5.63185 5.75852 5.87844 6.24636 6.30124 6.39321 6.61823 6.88693 7.27919 7.38808 8.90970 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.025916 B = 0.003000 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.140530 B = 9331.257849 C = 9874.575408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.142 3.858 3 H 0.085 0.915 4 C -0.109 4.109 5 C 0.028 3.972 6 C -0.541 4.541 7 H 0.061 0.939 8 C -0.002 4.002 9 N -0.933 5.933 10 Si 0.960 3.040 11 H -0.260 1.260 12 H -0.283 1.283 13 H -0.279 1.279 14 N -0.706 5.706 15 C 0.319 3.681 16 C -0.275 4.275 17 C 0.177 3.823 18 N -0.509 5.509 19 C 0.122 3.878 20 C -0.177 4.177 21 C -0.195 4.195 22 C -0.142 4.142 23 C 0.526 3.474 24 O -0.624 6.624 25 C -0.417 4.417 26 H 0.069 0.931 27 H 0.054 0.946 28 H 0.082 0.918 29 H 0.055 0.945 30 H 0.077 0.923 31 H -0.011 1.011 32 H -0.009 1.009 33 H 0.261 0.739 34 H 0.400 0.600 35 H 0.170 0.830 36 H 0.218 0.782 37 H 0.133 0.867 38 H 0.073 0.927 39 H 0.108 0.892 40 H 0.080 0.920 41 H 0.090 0.910 42 H 0.114 0.886 43 H 0.110 0.890 44 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.306 12.177 -12.978 23.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.038 3.962 3 H 0.103 0.897 4 C -0.146 4.146 5 C -0.009 4.009 6 C -0.579 4.579 7 H 0.079 0.921 8 C -0.199 4.199 9 N -0.573 5.573 10 Si 0.785 3.215 11 H -0.184 1.184 12 H -0.209 1.209 13 H -0.204 1.204 14 N -0.328 5.328 15 C 0.203 3.797 16 C -0.300 4.300 17 C 0.050 3.950 18 N -0.219 5.219 19 C 0.001 3.999 20 C -0.196 4.196 21 C -0.232 4.232 22 C -0.180 4.180 23 C 0.334 3.666 24 O -0.514 6.514 25 C -0.447 4.447 26 H 0.088 0.912 27 H 0.073 0.927 28 H 0.100 0.900 29 H 0.074 0.926 30 H 0.096 0.904 31 H 0.008 0.992 32 H 0.009 0.991 33 H 0.070 0.930 34 H 0.235 0.765 35 H 0.188 0.812 36 H 0.235 0.765 37 H 0.151 0.849 38 H 0.092 0.908 39 H 0.126 0.874 40 H 0.099 0.901 41 H 0.109 0.891 42 H 0.132 0.868 43 H 0.128 0.872 44 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -14.964 12.000 -13.430 23.415 hybrid contribution 1.176 -1.593 0.797 2.134 sum -13.787 10.407 -12.633 21.401 Atomic orbital electron populations 1.22200 0.93193 1.02664 1.03303 1.21283 0.94824 0.96813 0.83256 0.89715 1.21787 0.96279 0.99965 0.96617 1.18962 0.92189 0.94794 0.94922 1.21784 0.92392 1.34430 1.09274 0.92080 1.25960 0.97613 0.96440 0.99930 1.70114 1.02648 1.45685 1.38869 0.85471 0.78475 0.78208 0.79337 1.18373 1.20950 1.20436 1.45047 1.67473 1.12939 1.07309 1.18458 0.84360 0.91824 0.85101 1.20757 1.16135 0.92643 1.00465 1.22428 0.88888 0.99877 0.83845 1.45451 1.54479 1.10433 1.11547 1.21659 0.97184 0.97736 0.83341 1.22595 0.98517 1.07554 0.90935 1.23033 1.02795 0.96602 1.00815 1.23071 1.04725 0.92600 0.97557 1.16463 0.79366 0.81451 0.89346 1.90843 1.53644 1.69397 1.37525 1.21119 1.28546 1.01769 0.93259 0.91212 0.92721 0.89953 0.92603 0.90444 0.99235 0.99091 0.93017 0.76480 0.81238 0.76536 0.84920 0.90830 0.87356 0.90137 0.89111 0.86813 0.87162 0.86996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.13 9.44 71.98 0.68 -2.45 16 2 C 0.14 3.91 2.27 44.99 0.10 4.01 16 3 H 0.08 2.27 6.51 -2.38 -0.02 2.26 16 4 C -0.11 -3.85 4.69 30.59 0.14 -3.71 16 5 C 0.03 1.41 4.86 29.85 0.15 1.55 16 6 C -0.54 -29.80 9.11 25.60 0.23 -29.57 16 7 H 0.06 3.21 7.74 -2.92 -0.02 3.19 16 8 C 0.00 -0.10 5.46 84.66 0.46 0.36 16 9 N -0.93 -56.86 13.29 21.45 0.28 -56.58 16 10 Si 0.96 44.05 29.54 68.60 2.03 46.07 16 11 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 12 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 13 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 14 N -0.71 -21.51 4.65 -318.47 -1.48 -22.99 16 15 C 0.32 9.61 6.66 38.91 0.26 9.87 16 16 C -0.27 -5.95 8.79 22.22 0.20 -5.76 16 17 C 0.18 3.03 10.26 83.29 0.85 3.88 16 18 N -0.51 -12.35 2.59 -651.95 -1.69 -14.04 16 19 C 0.12 2.24 5.60 86.38 0.48 2.72 16 20 C -0.18 -2.94 6.01 -10.79 -0.06 -3.01 16 21 C -0.20 -3.71 10.18 30.62 0.31 -3.40 16 22 C -0.14 -1.66 10.26 30.62 0.31 -1.35 16 23 C 0.53 18.82 7.38 84.65 0.62 19.44 16 24 O -0.62 -27.12 16.61 -5.77 -0.10 -27.21 16 25 C -0.42 -15.06 9.88 22.72 0.22 -14.84 16 26 H 0.07 1.22 7.71 -2.39 -0.02 1.20 16 27 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16 28 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.08 2.57 8.14 -2.38 -0.02 2.55 16 31 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 32 H -0.01 -0.51 7.75 -2.39 -0.02 -0.53 16 33 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 34 H 0.40 13.01 8.61 -92.71 -0.80 12.21 16 35 H 0.17 2.82 6.23 -2.91 -0.02 2.81 16 36 H 0.22 1.15 8.03 -2.91 -0.02 1.13 16 37 H 0.13 1.27 8.00 -2.39 -0.02 1.25 16 38 H 0.07 1.76 7.10 -2.38 -0.02 1.75 16 39 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.08 1.82 8.03 -2.38 -0.02 1.80 16 41 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.11 4.40 8.06 -2.91 -0.02 4.38 16 Total: -1.00 -78.19 364.19 4.20 -74.00 By element: Atomic # 1 Polarization: 22.80 SS G_CDS: 0.18 Total: 22.98 kcal Atomic # 6 Polarization: -27.19 SS G_CDS: 4.97 Total: -22.23 kcal Atomic # 7 Polarization: -90.73 SS G_CDS: -2.88 Total: -93.61 kcal Atomic # 8 Polarization: -27.12 SS G_CDS: -0.10 Total: -27.21 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.07 kcal Total: -78.19 4.20 -74.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172491595.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.736 kcal (2) G-P(sol) polarization free energy of solvation -78.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds