Wall clock time and date at job start Tue Mar 31 2020 07:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.46950 * 2 1 4 4 C 1.53000 * 109.47477 * 120.00558 * 2 1 3 5 5 C 1.52995 * 109.47257 * 185.00128 * 4 2 1 6 6 C 1.50703 * 109.47117 * 179.97438 * 5 4 2 7 7 H 1.07996 * 120.00239 * 359.97438 * 6 5 4 8 8 C 1.37874 * 119.99732 * 180.02562 * 6 5 4 9 9 N 1.31516 * 120.00332 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 119.99663 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.46954 * 60.00150 * 10 8 6 12 12 H 1.48507 * 109.46895 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.47201 * 299.99714 * 10 8 6 14 14 N 1.46503 * 109.47118 * 240.00017 * 2 1 3 15 15 C 1.40311 * 119.99727 * 84.99432 * 14 2 1 16 16 C 1.40615 * 120.08898 * 359.97438 * 15 14 2 17 17 C 1.36375 * 119.25742 * 180.02562 * 16 15 14 18 18 C 1.40478 * 119.40420 * 359.96962 * 17 16 15 19 19 O 1.22113 * 119.91847 * 180.30188 * 18 17 16 20 20 N 1.34634 * 120.15609 * 0.02851 * 18 17 16 21 21 C 1.46505 * 119.61130 * 180.02562 * 20 18 17 22 22 C 1.53002 * 109.46663 * 90.00381 * 21 20 18 23 23 C 1.53008 * 117.49359 * 243.61809 * 22 21 20 24 24 C 1.52998 * 117.49693 * 174.99888 * 22 21 20 25 25 C 1.35878 * 120.08755 * 180.02562 * 15 14 2 26 26 H 1.09009 * 109.47088 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46811 * 299.99586 * 1 2 3 28 28 H 1.08993 * 109.47747 * 60.00031 * 1 2 3 29 29 H 1.09006 * 109.46561 * 304.99599 * 4 2 1 30 30 H 1.09000 * 109.47363 * 64.99283 * 4 2 1 31 31 H 1.09001 * 109.46897 * 299.99756 * 5 4 2 32 32 H 1.08999 * 109.47510 * 59.99858 * 5 4 2 33 33 H 0.97001 * 119.99533 * 180.02562 * 9 8 6 34 34 H 0.96995 * 120.00673 * 265.00029 * 14 2 1 35 35 H 1.08002 * 120.36969 * 359.97438 * 16 15 14 36 36 H 1.07998 * 120.29736 * 180.02562 * 17 16 15 37 37 H 1.08996 * 109.46894 * 209.99920 * 21 20 18 38 38 H 1.08999 * 109.47304 * 330.00553 * 21 20 18 39 39 H 1.08995 * 115.55247 * 29.32744 * 22 21 20 40 40 H 1.08995 * 117.50190 * 0.02562 * 23 22 21 41 41 H 1.09001 * 117.49594 * 145.02067 * 23 22 21 42 42 H 1.08999 * 117.50222 * 214.97308 * 24 22 21 43 43 H 1.09006 * 117.49963 * 359.97438 * 24 22 21 44 44 H 1.08003 * 119.70119 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7214 1.2491 5 6 3.5648 -0.6133 1.3136 6 6 4.0672 -1.3233 2.5443 7 1 3.3688 -1.8032 3.2138 8 6 5.4184 -1.3593 2.8161 9 7 6.2690 -0.7745 2.0011 10 14 6.0410 -2.2388 4.3420 11 1 5.6486 -3.6699 4.2833 12 1 7.5211 -2.1340 4.4044 13 1 5.4485 -1.6122 5.5509 14 7 2.0183 -0.6906 -1.1962 15 6 2.1522 0.0094 -2.4048 16 6 1.8177 1.3736 -2.4702 17 6 1.9538 2.0373 -3.6537 18 6 2.4254 1.3458 -4.7820 19 8 2.5562 1.9322 -5.8451 20 7 2.7388 0.0395 -4.6925 21 6 3.2301 -0.6698 -5.8765 22 6 4.7556 -0.5677 -5.9356 23 6 5.3681 0.1780 -7.1230 24 6 5.4734 -1.3462 -7.0399 25 6 2.6044 -0.6295 -3.5155 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 1.6055 -0.2618 2.1369 30 1 1.7517 -1.7716 1.2055 31 1 3.9994 -1.0728 0.4258 32 1 3.8532 0.4369 1.3573 33 1 7.2196 -0.8003 2.1922 34 1 2.2490 -1.6317 -1.1527 35 1 1.4562 1.8898 -1.5931 36 1 1.7022 3.0853 -3.7228 37 1 2.9382 -1.7184 -5.8189 38 1 2.8010 -0.2217 -6.7726 39 1 5.2586 -0.4808 -4.9726 40 1 4.6844 0.5960 -7.8617 41 1 6.2743 0.7557 -6.9412 42 1 6.4490 -1.7711 -6.8035 43 1 4.8590 -1.9315 -7.7240 44 1 2.8604 -1.6774 -3.4632 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172493896.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:04 Heat of formation + Delta-G solvation = 13.415983 kcal Electronic energy + Delta-G solvation = -22827.839735 eV Core-core repulsion = 19552.984197 eV Total energy + Delta-G solvation = -3274.855538 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.12077 -38.04403 -37.38998 -35.99639 -34.10018 -32.97086 -31.53660 -29.51150 -28.09772 -27.05928 -25.14059 -23.88539 -22.58650 -22.41982 -21.48586 -20.78638 -19.89610 -17.83651 -17.30498 -16.30247 -16.25288 -15.91316 -15.68955 -14.93278 -14.65741 -14.49233 -14.10165 -13.90452 -13.36530 -13.18771 -13.06864 -12.83240 -12.52445 -12.27173 -12.12167 -11.89612 -11.64643 -11.63439 -11.47663 -11.27145 -10.95310 -10.70094 -10.57145 -10.48236 -10.15822 -9.99503 -9.89184 -9.64895 -9.44208 -9.14550 -8.91047 -8.38757 -6.73116 -6.03876 -4.07084 0.95694 2.27730 2.75985 3.29167 3.34524 3.36172 3.65403 3.85364 3.85826 4.41553 4.55645 4.70027 4.77251 4.85550 4.99209 5.06977 5.14717 5.26789 5.30676 5.32133 5.37736 5.46553 5.53411 5.54108 5.65392 5.79197 5.86829 5.97759 5.99647 6.07885 6.09972 6.15644 6.23734 6.29016 6.43569 6.63721 6.69924 7.01452 7.30936 7.62052 7.64233 7.78463 7.96002 8.09010 8.31176 8.37321 9.00413 9.57456 11.06821 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.014536 B = 0.003753 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.810930 B = 7459.096980 C = 8815.753932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.150 3.850 3 H 0.070 0.930 4 C -0.118 4.118 5 C 0.025 3.975 6 C -0.525 4.525 7 H 0.053 0.947 8 C 0.059 3.941 9 N -0.893 5.893 10 Si 0.890 3.110 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.277 1.277 14 N -0.731 5.731 15 C 0.130 3.870 16 C -0.046 4.046 17 C -0.216 4.216 18 C 0.501 3.499 19 O -0.573 6.573 20 N -0.473 5.473 21 C 0.132 3.868 22 C -0.172 4.172 23 C -0.168 4.168 24 C -0.174 4.174 25 C 0.003 3.997 26 H 0.055 0.945 27 H 0.060 0.940 28 H 0.049 0.951 29 H 0.062 0.938 30 H 0.052 0.948 31 H 0.020 0.980 32 H 0.013 0.987 33 H 0.261 0.739 34 H 0.400 0.600 35 H 0.136 0.864 36 H 0.147 0.853 37 H 0.090 0.910 38 H 0.096 0.904 39 H 0.110 0.890 40 H 0.098 0.902 41 H 0.093 0.907 42 H 0.096 0.904 43 H 0.095 0.905 44 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.393 -0.523 -13.719 16.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.045 3.955 3 H 0.088 0.912 4 C -0.156 4.156 5 C -0.012 4.012 6 C -0.563 4.563 7 H 0.071 0.929 8 C -0.143 4.143 9 N -0.532 5.532 10 Si 0.718 3.282 11 H -0.203 1.203 12 H -0.213 1.213 13 H -0.203 1.203 14 N -0.364 5.364 15 C 0.025 3.975 16 C -0.070 4.070 17 C -0.238 4.238 18 C 0.302 3.698 19 O -0.458 6.458 20 N -0.186 5.186 21 C 0.010 3.990 22 C -0.191 4.191 23 C -0.205 4.205 24 C -0.211 4.211 25 C -0.127 4.127 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.038 0.962 32 H 0.031 0.969 33 H 0.070 0.930 34 H 0.236 0.764 35 H 0.154 0.846 36 H 0.165 0.835 37 H 0.108 0.892 38 H 0.115 0.885 39 H 0.128 0.872 40 H 0.116 0.884 41 H 0.111 0.889 42 H 0.115 0.885 43 H 0.113 0.887 44 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -8.191 0.004 -14.275 16.459 hybrid contribution 0.663 -0.882 1.171 1.609 sum -7.528 -0.879 -13.105 15.139 Atomic orbital electron populations 1.22333 0.97082 1.01914 1.01201 1.21040 0.92008 0.97024 0.85462 0.91151 1.21931 1.00609 0.98944 0.94112 1.19061 0.88079 0.97092 0.96965 1.21230 0.91952 1.34657 1.08498 0.92862 1.25009 0.97108 0.95574 0.96591 1.69957 1.02430 1.43884 1.36972 0.86700 0.77681 0.80212 0.83642 1.20288 1.21304 1.20251 1.44528 1.74163 1.12082 1.05649 1.16937 1.01763 0.91558 0.87280 1.21373 0.94642 0.92668 0.98346 1.22020 1.07771 1.01634 0.92413 1.16970 0.81471 0.80837 0.90504 1.90917 1.58638 1.65862 1.30426 1.44855 1.53529 1.10573 1.09632 1.21377 0.92329 0.96966 0.88367 1.22629 0.94358 1.06533 0.95601 1.23005 1.02994 0.94030 1.00425 1.22962 1.02031 0.94798 1.01358 1.20742 1.08634 0.98466 0.84864 0.92634 0.92126 0.93239 0.91978 0.92885 0.96186 0.96874 0.92960 0.76439 0.84589 0.83485 0.89214 0.88525 0.87177 0.88368 0.88864 0.88524 0.88664 0.82953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.99 9.46 37.16 0.35 -1.64 16 2 C 0.15 2.18 2.28 -67.93 -0.15 2.03 16 3 H 0.07 1.07 6.51 -51.93 -0.34 0.73 16 4 C -0.12 -2.13 4.69 -26.73 -0.13 -2.26 16 5 C 0.03 0.60 4.86 -27.88 -0.14 0.47 16 6 C -0.53 -14.24 9.11 -34.44 -0.31 -14.55 16 7 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 8 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 9 N -0.89 -26.31 13.29 55.43 0.74 -25.57 16 10 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 13 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 14 N -0.73 -10.20 4.72 -52.31 -0.25 -10.45 16 15 C 0.13 1.76 6.61 -83.92 -0.55 1.20 16 16 C -0.05 -0.61 8.89 -39.36 -0.35 -0.96 16 17 C -0.22 -3.01 9.98 -39.41 -0.39 -3.40 16 18 C 0.50 7.84 7.40 -15.48 -0.11 7.73 16 19 O -0.57 -10.56 16.63 4.82 0.08 -10.48 16 20 N -0.47 -6.27 2.59 -119.55 -0.31 -6.58 16 21 C 0.13 1.45 5.61 -4.04 -0.02 1.43 16 22 C -0.17 -1.92 6.01 -90.62 -0.54 -2.47 16 23 C -0.17 -1.80 10.18 -26.73 -0.27 -2.07 16 24 C -0.17 -1.56 10.25 -26.73 -0.27 -1.84 16 25 C 0.00 0.04 10.13 -16.53 -0.17 -0.13 16 26 H 0.05 0.65 8.14 -51.92 -0.42 0.23 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.05 0.55 7.77 -51.93 -0.40 0.15 16 29 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.02 0.50 7.75 -51.93 -0.40 0.10 16 32 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 34 H 0.40 5.47 8.61 -40.82 -0.35 5.11 16 35 H 0.14 1.61 6.27 -52.49 -0.33 1.28 16 36 H 0.15 1.82 8.06 -52.49 -0.42 1.40 16 37 H 0.09 0.75 8.02 -51.93 -0.42 0.34 16 38 H 0.10 1.13 7.12 -51.93 -0.37 0.76 16 39 H 0.11 1.40 8.14 -51.93 -0.42 0.98 16 40 H 0.10 1.07 8.03 -51.93 -0.42 0.65 16 41 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 43 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.15 1.58 8.04 -52.48 -0.42 1.16 16 LS Contribution 364.53 15.07 5.49 5.49 Total: -1.00 -31.78 364.53 -9.66 -41.44 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -7.22 Total: 4.93 kcal Atomic # 6 Polarization: -11.75 SS G_CDS: -3.17 Total: -14.92 kcal Atomic # 7 Polarization: -42.77 SS G_CDS: 0.18 Total: -42.59 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.08 Total: -10.48 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.78 -9.66 -41.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172493896.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.852 kcal (2) G-P(sol) polarization free energy of solvation -31.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds