Wall clock time and date at job start Tue Mar 31 2020 07:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.47327 * 2 1 4 4 C 1.52993 * 109.47230 * 120.00841 * 2 1 3 5 5 C 1.53008 * 109.47111 * 184.99998 * 4 2 1 6 6 C 1.50695 * 109.47025 * 179.97438 * 5 4 2 7 7 H 1.08001 * 120.00577 * 359.97438 * 6 5 4 8 8 C 1.37879 * 119.99849 * 180.02562 * 6 5 4 9 9 N 1.31516 * 120.00342 * 180.02562 * 8 6 5 10 10 Si 1.86805 * 119.99850 * 359.97438 * 8 6 5 11 11 H 1.48503 * 109.46934 * 90.00316 * 10 8 6 12 12 H 1.48503 * 109.47023 * 210.00137 * 10 8 6 13 13 H 1.48495 * 109.47043 * 330.00236 * 10 8 6 14 14 N 1.46905 * 109.46907 * 240.00902 * 2 1 3 15 15 C 1.47447 * 110.99700 * 305.94972 * 14 2 1 16 16 C 1.54311 * 107.23272 * 123.25972 * 15 14 2 17 17 C 1.55137 * 103.02129 * 22.28187 * 16 15 14 18 18 H 1.09004 * 110.98901 * 82.44001 * 17 16 15 19 19 O 1.42905 * 110.99047 * 206.21355 * 17 16 15 20 20 C 1.35732 * 117.00486 * 268.54396 * 19 17 16 21 21 C 1.39268 * 120.84587 * 359.72259 * 20 19 17 22 22 C 1.37964 * 119.09177 * 179.77283 * 21 20 19 23 23 N 1.31966 * 120.82206 * 0.51080 * 22 21 20 24 24 C 1.31952 * 121.86531 * 359.74147 * 23 22 21 25 25 C 1.37980 * 120.82343 * 359.97438 * 24 23 22 26 26 C 1.47843 * 111.00211 * 66.79139 * 14 2 1 27 27 H 1.09003 * 109.47054 * 306.56438 * 1 2 3 28 28 H 1.08998 * 109.47140 * 66.56805 * 1 2 3 29 29 H 1.09002 * 109.47105 * 186.56515 * 1 2 3 30 30 H 1.08992 * 109.47749 * 64.99902 * 4 2 1 31 31 H 1.09003 * 109.47182 * 304.99852 * 4 2 1 32 32 H 1.09001 * 109.46814 * 59.99240 * 5 4 2 33 33 H 1.09003 * 109.46978 * 299.99979 * 5 4 2 34 34 H 0.96995 * 120.00236 * 180.02562 * 9 8 6 35 35 H 1.09006 * 109.88716 * 242.66738 * 15 14 2 36 36 H 1.08999 * 109.88847 * 3.68929 * 15 14 2 37 37 H 1.09005 * 110.71014 * 140.66594 * 16 15 14 38 38 H 1.08996 * 110.70728 * 263.89697 * 16 15 14 39 39 H 1.08003 * 120.45190 * 0.02562 * 21 20 19 40 40 H 1.08002 * 119.58980 * 180.27597 * 22 21 20 41 41 H 1.07997 * 119.59234 * 180.02562 * 24 23 22 42 42 H 1.07997 * 120.45296 * 180.02562 * 25 24 23 43 43 H 1.09003 * 110.37094 * 332.46369 * 26 14 2 44 44 H 1.08996 * 110.37560 * 94.80863 * 26 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 3.5649 -0.6134 1.3135 6 6 4.0672 -1.3234 2.5441 7 1 3.3687 -1.8034 3.2137 8 6 5.4184 -1.3595 2.8160 9 7 5.8569 -1.9796 3.8897 10 14 6.6265 -0.5288 1.6583 11 1 6.8312 0.8792 2.0836 12 1 7.9238 -1.2507 1.6955 13 1 6.0850 -0.5548 0.2759 14 7 2.0197 -0.6923 -1.1996 15 6 1.4338 -2.0411 -1.3073 16 6 0.7234 -2.1231 -2.6747 17 6 1.4286 -1.0163 -3.5019 18 1 2.3674 -1.3797 -3.9200 19 8 0.5703 -0.5217 -4.5319 20 6 0.6490 -1.1280 -5.7437 21 6 1.5359 -2.1798 -5.9597 22 6 1.5826 -2.7729 -7.2045 23 7 0.8081 -2.3487 -8.1851 24 6 -0.0409 -1.3521 -8.0209 25 6 -0.1513 -0.7106 -6.8043 26 6 1.6834 0.0660 -2.4234 27 1 -0.3633 0.6122 0.8254 28 1 -0.3633 0.4087 -0.9429 29 1 -0.3633 -1.0209 0.1175 30 1 1.7517 -1.7716 1.2054 31 1 1.6054 -0.2620 2.1369 32 1 3.8532 0.4369 1.3572 33 1 3.9995 -1.0728 0.4257 34 1 6.8075 -2.0046 4.0811 35 1 2.2213 -2.7929 -1.2528 36 1 0.7150 -2.1985 -0.5031 37 1 0.8763 -3.1014 -3.1305 38 1 -0.3400 -1.9076 -2.5701 39 1 2.1754 -2.5290 -5.1625 40 1 2.2642 -3.5922 -7.3795 41 1 -0.6577 -1.0350 -8.8488 42 1 -0.8485 0.1042 -6.6764 43 1 0.7852 0.6629 -2.2651 44 1 2.5175 0.7040 -2.7157 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172497403.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:34 Heat of formation + Delta-G solvation = -17.113105 kcal Electronic energy + Delta-G solvation = -23033.614679 eV Core-core repulsion = 19757.435300 eV Total energy + Delta-G solvation = -3276.179378 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.79870 -40.59276 -38.96226 -36.00711 -34.49240 -32.48367 -32.18659 -31.80779 -30.13912 -29.24796 -27.14785 -24.82231 -24.25655 -23.64768 -22.57824 -21.90070 -20.38361 -19.67251 -18.77413 -17.85398 -17.23560 -16.90847 -16.51511 -16.31522 -16.05167 -15.78116 -15.36225 -15.00220 -14.71246 -14.61712 -14.53228 -14.35835 -14.22341 -14.04246 -13.55680 -13.22521 -12.90672 -12.89447 -12.68924 -12.48219 -12.23800 -12.05197 -11.95020 -11.64512 -11.63764 -11.40687 -11.33708 -11.06558 -10.71410 -10.55024 -10.21695 -9.86560 -9.18644 -8.25770 -6.27976 0.12702 0.32718 1.37432 1.39763 1.54064 1.83462 2.40097 2.83365 3.06135 3.10991 3.44996 3.49973 3.56698 3.72205 3.80926 3.96172 3.99622 4.12305 4.21418 4.24111 4.34386 4.39312 4.45908 4.57041 4.67578 4.69954 4.75522 4.81806 4.84982 4.87867 4.92137 4.95948 5.01946 5.09958 5.17869 5.24131 5.36471 5.57688 5.58775 5.69658 5.76074 6.03639 6.15530 6.20845 6.34621 6.80952 7.03054 7.36660 8.91294 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.022998 B = 0.003266 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.231126 B = 8570.490501 C = 9241.015920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.080 3.920 3 H 0.080 0.920 4 C -0.086 4.086 5 C 0.001 3.999 6 C -0.528 4.528 7 H 0.028 0.972 8 C 0.001 3.999 9 N -0.956 5.956 10 Si 0.950 3.050 11 H -0.270 1.270 12 H -0.287 1.287 13 H -0.245 1.245 14 N -0.528 5.528 15 C 0.039 3.961 16 C -0.148 4.148 17 C 0.075 3.925 18 H 0.099 0.901 19 O -0.305 6.305 20 C 0.157 3.843 21 C -0.267 4.267 22 C 0.128 3.872 23 N -0.536 5.536 24 C 0.128 3.872 25 C -0.213 4.213 26 C 0.048 3.952 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.048 0.952 31 H 0.051 0.949 32 H 0.007 0.993 33 H 0.028 0.972 34 H 0.264 0.736 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.090 0.910 38 H 0.080 0.920 39 H 0.150 0.850 40 H 0.177 0.823 41 H 0.189 0.811 42 H 0.156 0.844 43 H 0.069 0.931 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.709 3.083 -23.594 27.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.029 4.029 3 H 0.099 0.901 4 C -0.124 4.124 5 C -0.036 4.036 6 C -0.566 4.566 7 H 0.046 0.954 8 C -0.194 4.194 9 N -0.598 5.598 10 Si 0.774 3.226 11 H -0.195 1.195 12 H -0.213 1.213 13 H -0.168 1.168 14 N -0.252 5.252 15 C -0.089 4.089 16 C -0.187 4.187 17 C 0.019 3.981 18 H 0.116 0.884 19 O -0.215 6.215 20 C 0.104 3.896 21 C -0.288 4.288 22 C -0.028 4.028 23 N -0.249 5.249 24 C -0.027 4.027 25 C -0.234 4.234 26 C -0.080 4.080 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.026 0.974 33 H 0.046 0.954 34 H 0.073 0.927 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.109 0.891 38 H 0.099 0.901 39 H 0.168 0.832 40 H 0.195 0.805 41 H 0.206 0.794 42 H 0.174 0.826 43 H 0.087 0.913 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -13.095 2.781 -24.148 27.611 hybrid contribution 0.095 0.380 1.278 1.337 sum -13.000 3.161 -22.870 26.496 Atomic orbital electron populations 1.22425 0.95941 1.02523 1.02664 1.21866 0.93399 0.97988 0.89601 0.90144 1.21387 0.96172 0.99243 0.95582 1.19370 0.94298 0.95157 0.94779 1.21629 0.92505 1.33909 1.08563 0.95355 1.26011 1.00736 0.95862 0.96833 1.70082 1.15129 1.45852 1.28701 0.85647 0.77562 0.78551 0.80824 1.19480 1.21281 1.16802 1.63761 1.57331 1.02576 1.01579 1.22793 0.97994 0.91459 0.96641 1.23190 1.00523 0.99595 0.95390 1.23675 0.93194 0.95055 0.86221 0.88376 1.86052 1.60470 1.57127 1.17898 1.19635 0.93428 0.91015 0.85554 1.22461 1.03973 1.00707 1.01613 1.22963 0.94910 0.97396 0.87483 1.67777 1.07837 1.14965 1.34320 1.23105 0.93806 0.89642 0.96129 1.21772 1.03715 1.05451 0.92450 1.22997 1.01479 0.95487 0.88032 0.91368 0.91538 0.92175 0.93353 0.92986 0.97432 0.95396 0.92714 0.91146 0.91304 0.89145 0.90123 0.83204 0.80550 0.79446 0.82624 0.91298 0.89346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.04 8.56 71.98 0.62 -3.43 16 2 C 0.08 2.31 2.27 44.91 0.10 2.41 16 3 H 0.08 2.33 8.12 -2.39 -0.02 2.31 16 4 C -0.09 -3.25 4.54 30.59 0.14 -3.11 16 5 C 0.00 0.07 3.93 29.85 0.12 0.18 16 6 C -0.53 -30.94 9.66 25.60 0.25 -30.69 16 7 H 0.03 1.82 7.99 -2.91 -0.02 1.80 16 8 C 0.00 0.09 5.47 84.65 0.46 0.55 16 9 N -0.96 -61.18 13.96 21.45 0.30 -60.88 16 10 Si 0.95 45.50 27.47 68.60 1.88 47.38 16 11 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 12 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 13 H -0.24 -10.98 6.54 99.48 0.65 -10.33 16 14 N -0.53 -14.53 4.61 -860.36 -3.97 -18.49 16 15 C 0.04 0.95 5.57 86.64 0.48 1.44 16 16 C -0.15 -2.84 6.68 31.77 0.21 -2.63 16 17 C 0.08 1.48 2.92 31.98 0.09 1.57 16 18 H 0.10 1.85 6.01 -2.38 -0.01 1.84 16 19 O -0.30 -6.17 9.96 -90.55 -0.90 -7.08 16 20 C 0.16 2.99 6.74 22.76 0.15 3.14 16 21 C -0.27 -4.64 9.09 22.45 0.20 -4.44 16 22 C 0.13 2.18 11.17 84.61 0.95 3.12 16 23 N -0.54 -10.22 10.36 -196.09 -2.03 -12.25 16 24 C 0.13 1.97 11.17 84.61 0.95 2.91 16 25 C -0.21 -3.44 10.08 22.46 0.23 -3.21 16 26 C 0.05 1.06 6.21 86.77 0.54 1.60 16 27 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.07 1.34 6.19 -2.39 -0.01 1.32 16 29 H 0.06 1.36 6.25 -2.39 -0.01 1.35 16 30 H 0.05 1.86 6.76 -2.39 -0.02 1.85 16 31 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.01 0.34 7.57 -2.39 -0.02 0.33 16 33 H 0.03 1.32 6.81 -2.39 -0.02 1.31 16 34 H 0.26 15.78 8.31 -92.71 -0.77 15.00 16 35 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 36 H 0.07 1.73 4.83 -2.39 -0.01 1.72 16 37 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16 38 H 0.08 1.51 8.14 -2.39 -0.02 1.50 16 39 H 0.15 2.27 6.02 -2.91 -0.02 2.26 16 40 H 0.18 2.09 8.06 -2.91 -0.02 2.06 16 41 H 0.19 1.61 8.06 -2.91 -0.02 1.59 16 42 H 0.16 1.92 8.06 -2.91 -0.02 1.90 16 43 H 0.07 1.45 5.94 -2.39 -0.01 1.43 16 44 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -70.08 344.99 1.70 -68.39 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: 0.93 Total: 13.50 kcal Atomic # 6 Polarization: -36.07 SS G_CDS: 5.49 Total: -30.58 kcal Atomic # 7 Polarization: -85.92 SS G_CDS: -5.70 Total: -91.62 kcal Atomic # 8 Polarization: -6.17 SS G_CDS: -0.90 Total: -7.08 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 1.88 Total: 47.38 kcal Total: -70.08 1.70 -68.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172497403.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.274 kcal (2) G-P(sol) polarization free energy of solvation -70.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds