Wall clock time and date at job start Tue Mar 31 2020 07:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08995 * 109.47093 * 2 1 4 4 C 1.52998 * 109.46752 * 240.00562 * 2 1 3 5 5 C 1.53005 * 109.47306 * 175.00000 * 4 2 1 6 6 C 1.50694 * 109.47456 * 180.02562 * 5 4 2 7 7 H 1.07999 * 120.00169 * 359.97438 * 6 5 4 8 8 C 1.37881 * 120.00084 * 180.02562 * 6 5 4 9 9 N 1.31511 * 119.99568 * 359.97438 * 8 6 5 10 10 Si 1.86792 * 120.00032 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47210 * 89.99951 * 10 8 6 12 12 H 1.48499 * 109.47148 * 210.00133 * 10 8 6 13 13 H 1.48499 * 109.47277 * 329.99978 * 10 8 6 14 14 N 1.46897 * 109.47166 * 120.00878 * 2 1 3 15 15 C 1.48559 * 111.00192 * 50.88296 * 14 2 1 16 16 C 1.54381 * 104.59060 * 200.95975 * 15 14 2 17 17 C 1.54260 * 105.06389 * 23.85505 * 16 15 14 18 18 H 1.09000 * 110.31928 * 241.00279 * 17 16 15 19 19 O 1.42895 * 110.32373 * 118.89704 * 17 16 15 20 20 C 1.35731 * 117.00288 * 85.13427 * 19 17 16 21 21 C 1.39264 * 120.84888 * 355.37692 * 20 19 17 22 22 C 1.37969 * 119.09271 * 179.97438 * 21 20 19 23 23 N 1.31963 * 120.82733 * 359.97438 * 22 21 20 24 24 C 1.31957 * 121.85931 * 0.02562 * 23 22 21 25 25 C 1.37974 * 120.82582 * 359.97438 * 24 23 22 26 26 C 1.48562 * 110.99684 * 295.46018 * 14 2 1 27 27 H 1.08996 * 109.46630 * 292.84992 * 1 2 3 28 28 H 1.08990 * 109.46940 * 52.85295 * 1 2 3 29 29 H 1.09000 * 109.46711 * 172.85473 * 1 2 3 30 30 H 1.08997 * 109.47313 * 294.99796 * 4 2 1 31 31 H 1.09006 * 109.47239 * 54.99957 * 4 2 1 32 32 H 1.09007 * 109.46777 * 300.00288 * 5 4 2 33 33 H 1.08995 * 109.47312 * 59.99393 * 5 4 2 34 34 H 0.97001 * 119.99732 * 179.97438 * 9 8 6 35 35 H 1.08993 * 110.41069 * 82.18257 * 15 14 2 36 36 H 1.08997 * 110.40975 * 319.73329 * 15 14 2 37 37 H 1.09002 * 110.32302 * 264.95287 * 16 15 14 38 38 H 1.09002 * 110.32156 * 142.74906 * 16 15 14 39 39 H 1.07997 * 120.45283 * 359.97438 * 21 20 19 40 40 H 1.08007 * 119.58460 * 179.72197 * 22 21 20 41 41 H 1.08004 * 119.58708 * 180.02562 * 24 23 22 42 42 H 1.08003 * 120.45744 * 180.02562 * 25 24 23 43 43 H 1.08999 * 110.40994 * 40.26846 * 26 14 2 44 44 H 1.08995 * 110.41307 * 277.81817 * 26 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5649 -0.6132 -1.3139 6 6 4.0671 -1.3230 -2.5447 7 1 3.3686 -1.8034 -3.2139 8 6 5.4184 -1.3599 -2.8161 9 7 6.2689 -0.7753 -2.0010 10 14 6.0409 -2.2403 -4.3414 11 1 6.0913 -1.2858 -5.4779 12 1 7.4020 -2.7751 -4.0834 13 1 5.1244 -3.3599 -4.6755 14 7 2.0197 -0.6927 1.1993 15 6 1.3723 -2.0214 1.3484 16 6 1.5434 -2.3720 2.8421 17 6 1.7162 -1.0150 3.5552 18 1 2.6858 -0.9689 4.0511 19 8 0.6651 -0.8147 4.5022 20 6 0.8375 -1.3515 5.7369 21 6 1.9470 -2.1431 6.0229 22 6 2.0863 -2.6700 7.2904 23 7 1.1854 -2.4316 8.2247 24 6 0.1212 -1.6868 7.9922 25 6 -0.0902 -1.1237 6.7504 26 6 1.6350 0.0413 2.4323 27 1 -0.3632 0.3991 0.9470 28 1 -0.3633 0.6205 -0.8191 29 1 -0.3633 -1.0197 -0.1278 30 1 1.7516 -1.7714 -1.2058 31 1 1.6053 -0.2615 -2.1370 32 1 3.8532 0.4371 -1.3574 33 1 3.9995 -1.0727 -0.4262 34 1 7.2196 -0.8017 -2.1917 35 1 1.8740 -2.7609 0.7244 36 1 0.3149 -1.9600 1.0911 37 1 2.4288 -2.9911 2.9866 38 1 0.6568 -2.8851 3.2145 39 1 2.6881 -2.3418 5.2630 40 1 2.9414 -3.2888 7.5196 41 1 -0.5928 -1.5150 8.7841 42 1 -0.9630 -0.5148 6.5669 43 1 0.6188 0.4254 2.3446 44 1 2.3346 0.8548 2.6244 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172497404.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:46 Heat of formation + Delta-G solvation = 0.196410 kcal Electronic energy + Delta-G solvation = -22955.989325 eV Core-core repulsion = 19680.560543 eV Total energy + Delta-G solvation = -3275.428782 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.96354 -39.52510 -37.93921 -34.42298 -32.70597 -31.55396 -31.39471 -29.97600 -28.74790 -28.12079 -25.25376 -23.93282 -23.46968 -22.63016 -21.13807 -20.71500 -19.23663 -18.46835 -16.98172 -16.22769 -16.14304 -16.05684 -15.67448 -15.03990 -14.72014 -14.53953 -14.34560 -13.96564 -13.79390 -13.52439 -13.37863 -12.96866 -12.68524 -12.34183 -11.97313 -11.84464 -11.50918 -11.42755 -11.30830 -11.13735 -11.05400 -10.85622 -10.54118 -10.45687 -10.22176 -9.78877 -9.68907 -9.48432 -9.26013 -9.04635 -8.93674 -8.28761 -8.05900 -5.92231 -3.93799 0.85629 1.12129 2.76726 3.34399 3.40786 3.43780 3.58862 4.21247 4.23911 4.38951 4.50454 4.54646 4.54768 4.67143 4.83402 4.96348 5.07688 5.16486 5.33176 5.42973 5.43258 5.46052 5.47542 5.51428 5.58243 5.62930 5.70243 5.79292 5.86926 5.97028 6.01759 6.17679 6.22291 6.31837 6.34299 6.58403 6.74204 7.00509 7.15303 7.23008 7.37161 7.76552 7.80556 8.01724 8.16756 8.52660 9.14981 9.69135 11.18736 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.024972 B = 0.003027 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.968574 B = 9248.078456 C = 9970.623035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.070 3.930 3 H 0.081 0.919 4 C -0.099 4.099 5 C 0.029 3.971 6 C -0.520 4.520 7 H 0.051 0.949 8 C 0.057 3.943 9 N -0.894 5.894 10 Si 0.887 3.113 11 H -0.282 1.282 12 H -0.287 1.287 13 H -0.275 1.275 14 N -0.483 5.483 15 C 0.028 3.972 16 C -0.146 4.146 17 C 0.079 3.921 18 H 0.088 0.912 19 O -0.303 6.303 20 C 0.176 3.824 21 C -0.260 4.260 22 C 0.135 3.865 23 N -0.514 5.514 24 C 0.130 3.870 25 C -0.211 4.211 26 C 0.033 3.967 27 H 0.051 0.949 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.047 0.953 31 H 0.050 0.950 32 H 0.009 0.991 33 H 0.031 0.969 34 H 0.258 0.742 35 H 0.091 0.909 36 H 0.053 0.947 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.143 0.857 40 H 0.158 0.842 41 H 0.160 0.840 42 H 0.140 0.860 43 H 0.061 0.939 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.021 -0.701 16.700 21.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.038 4.038 3 H 0.099 0.901 4 C -0.137 4.137 5 C -0.008 4.008 6 C -0.558 4.558 7 H 0.069 0.931 8 C -0.144 4.144 9 N -0.533 5.533 10 Si 0.715 3.285 11 H -0.208 1.208 12 H -0.213 1.213 13 H -0.200 1.200 14 N -0.207 5.207 15 C -0.100 4.100 16 C -0.184 4.184 17 C 0.022 3.978 18 H 0.106 0.894 19 O -0.214 6.214 20 C 0.122 3.878 21 C -0.281 4.281 22 C -0.021 4.021 23 N -0.227 5.227 24 C -0.026 4.026 25 C -0.232 4.232 26 C -0.095 4.095 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.028 0.972 33 H 0.049 0.951 34 H 0.068 0.932 35 H 0.109 0.891 36 H 0.071 0.929 37 H 0.101 0.899 38 H 0.094 0.906 39 H 0.160 0.840 40 H 0.175 0.825 41 H 0.177 0.823 42 H 0.158 0.842 43 H 0.079 0.921 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -12.292 -0.932 17.345 21.280 hybrid contribution -0.359 -0.086 -1.767 1.805 sum -12.652 -1.019 15.578 20.094 Atomic orbital electron populations 1.22541 0.98620 1.02026 1.01519 1.22022 0.91365 0.99006 0.91404 0.90112 1.21671 1.00845 0.98252 0.92954 1.19006 0.87996 0.96760 0.97032 1.21324 0.91861 1.34208 1.08443 0.93113 1.24996 0.97139 0.95764 0.96495 1.69975 1.02203 1.44318 1.36839 0.86681 0.78143 0.79985 0.83673 1.20804 1.21306 1.20026 1.65725 1.52649 1.01842 1.00460 1.23185 0.98399 0.93318 0.95117 1.22901 1.02929 0.96339 0.96234 1.23364 0.89429 0.96563 0.88410 0.89431 1.86116 1.44800 1.71509 1.18978 1.19364 0.93129 0.90175 0.85112 1.22375 1.00584 1.04403 1.00723 1.22599 0.96579 0.94899 0.88051 1.67728 1.03471 1.16397 1.35113 1.22605 0.94135 0.91118 0.94724 1.21524 1.01867 1.06724 0.93050 1.23150 1.01202 0.95983 0.89163 0.93007 0.92038 0.92277 0.93400 0.93137 0.97224 0.95059 0.93193 0.89081 0.92907 0.89905 0.90613 0.83954 0.82507 0.82265 0.84222 0.92083 0.89056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.52 8.27 37.16 0.31 -2.21 16 2 C 0.07 1.15 2.37 -67.71 -0.16 0.99 16 3 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 4 C -0.10 -1.99 4.61 -26.73 -0.12 -2.12 16 5 C 0.03 0.75 4.86 -27.88 -0.14 0.61 16 6 C -0.52 -14.76 9.11 -34.44 -0.31 -15.08 16 7 H 0.05 1.40 7.74 -52.49 -0.41 1.00 16 8 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 9 N -0.89 -27.07 13.29 55.43 0.74 -26.33 16 10 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 11 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 13 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 14 N -0.48 -7.61 4.82 -222.03 -1.07 -8.68 16 15 C 0.03 0.39 5.48 -2.18 -0.01 0.37 16 16 C -0.15 -1.73 6.10 -25.35 -0.15 -1.88 16 17 C 0.08 0.93 2.93 -25.35 -0.07 0.86 16 18 H 0.09 0.99 6.50 -51.93 -0.34 0.66 16 19 O -0.30 -3.62 9.77 -18.90 -0.18 -3.80 16 20 C 0.18 1.95 6.67 -38.82 -0.26 1.69 16 21 C -0.26 -2.66 8.84 -39.30 -0.35 -3.00 16 22 C 0.13 1.33 11.17 -17.59 -0.20 1.14 16 23 N -0.51 -5.60 10.36 -13.33 -0.14 -5.74 16 24 C 0.13 1.20 11.17 -17.59 -0.20 1.00 16 25 C -0.21 -2.03 10.08 -39.29 -0.40 -2.43 16 26 C 0.03 0.43 6.09 -2.18 -0.01 0.42 16 27 H 0.05 0.64 5.97 -51.93 -0.31 0.33 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.06 0.78 6.34 -51.93 -0.33 0.45 16 30 H 0.05 0.95 7.02 -51.93 -0.36 0.59 16 31 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.03 0.86 7.75 -51.93 -0.40 0.46 16 34 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 35 H 0.09 1.41 7.63 -51.93 -0.40 1.01 16 36 H 0.05 0.70 5.43 -51.93 -0.28 0.42 16 37 H 0.08 0.94 8.12 -51.93 -0.42 0.52 16 38 H 0.08 0.85 7.98 -51.93 -0.41 0.43 16 39 H 0.14 1.33 5.92 -52.49 -0.31 1.01 16 40 H 0.16 1.15 8.06 -52.48 -0.42 0.73 16 41 H 0.16 0.97 8.06 -52.48 -0.42 0.55 16 42 H 0.14 1.10 8.06 -52.48 -0.42 0.68 16 43 H 0.06 0.77 5.76 -51.93 -0.30 0.48 16 44 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 347.68 15.07 5.24 5.24 Total: -1.00 -31.64 347.68 -9.40 -41.04 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -6.79 Total: -0.42 kcal Atomic # 6 Polarization: -15.91 SS G_CDS: -2.17 Total: -18.08 kcal Atomic # 7 Polarization: -40.28 SS G_CDS: -0.47 Total: -40.75 kcal Atomic # 8 Polarization: -3.62 SS G_CDS: -0.18 Total: -3.80 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.64 -9.40 -41.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172497404.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.236 kcal (2) G-P(sol) polarization free energy of solvation -31.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds