Wall clock time and date at job start Tue Mar 31 2020 07:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08995 * 109.47093 * 2 1 4 4 C 1.52998 * 109.46752 * 240.00562 * 2 1 3 5 5 C 1.53005 * 109.47306 * 175.00000 * 4 2 1 6 6 C 1.50694 * 109.47456 * 180.02562 * 5 4 2 7 7 H 1.07999 * 120.00169 * 359.97438 * 6 5 4 8 8 C 1.37881 * 120.00084 * 180.02562 * 6 5 4 9 9 N 1.31511 * 119.99568 * 359.97438 * 8 6 5 10 10 Si 1.86792 * 120.00032 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47210 * 89.99951 * 10 8 6 12 12 H 1.48499 * 109.47148 * 210.00133 * 10 8 6 13 13 H 1.48499 * 109.47277 * 329.99978 * 10 8 6 14 14 N 1.46897 * 109.47166 * 120.00878 * 2 1 3 15 15 C 1.48559 * 111.00192 * 50.88296 * 14 2 1 16 16 C 1.54381 * 104.59060 * 200.95975 * 15 14 2 17 17 C 1.54260 * 105.06389 * 23.85505 * 16 15 14 18 18 H 1.09000 * 110.31928 * 241.00279 * 17 16 15 19 19 O 1.42895 * 110.32373 * 118.89704 * 17 16 15 20 20 C 1.35731 * 117.00288 * 85.13427 * 19 17 16 21 21 C 1.39264 * 120.84888 * 355.37692 * 20 19 17 22 22 C 1.37969 * 119.09271 * 179.97438 * 21 20 19 23 23 N 1.31963 * 120.82733 * 359.97438 * 22 21 20 24 24 C 1.31957 * 121.85931 * 0.02562 * 23 22 21 25 25 C 1.37974 * 120.82582 * 359.97438 * 24 23 22 26 26 C 1.48562 * 110.99684 * 295.46018 * 14 2 1 27 27 H 1.08996 * 109.46630 * 292.84992 * 1 2 3 28 28 H 1.08990 * 109.46940 * 52.85295 * 1 2 3 29 29 H 1.09000 * 109.46711 * 172.85473 * 1 2 3 30 30 H 1.08997 * 109.47313 * 294.99796 * 4 2 1 31 31 H 1.09006 * 109.47239 * 54.99957 * 4 2 1 32 32 H 1.09007 * 109.46777 * 300.00288 * 5 4 2 33 33 H 1.08995 * 109.47312 * 59.99393 * 5 4 2 34 34 H 0.97001 * 119.99732 * 179.97438 * 9 8 6 35 35 H 1.08993 * 110.41069 * 82.18257 * 15 14 2 36 36 H 1.08997 * 110.40975 * 319.73329 * 15 14 2 37 37 H 1.09002 * 110.32302 * 264.95287 * 16 15 14 38 38 H 1.09002 * 110.32156 * 142.74906 * 16 15 14 39 39 H 1.07997 * 120.45283 * 359.97438 * 21 20 19 40 40 H 1.08007 * 119.58460 * 179.72197 * 22 21 20 41 41 H 1.08004 * 119.58708 * 180.02562 * 24 23 22 42 42 H 1.08003 * 120.45744 * 180.02562 * 25 24 23 43 43 H 1.08999 * 110.40994 * 40.26846 * 26 14 2 44 44 H 1.08995 * 110.41307 * 277.81817 * 26 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5649 -0.6132 -1.3139 6 6 4.0671 -1.3230 -2.5447 7 1 3.3686 -1.8034 -3.2139 8 6 5.4184 -1.3599 -2.8161 9 7 6.2689 -0.7753 -2.0010 10 14 6.0409 -2.2403 -4.3414 11 1 6.0913 -1.2858 -5.4779 12 1 7.4020 -2.7751 -4.0834 13 1 5.1244 -3.3599 -4.6755 14 7 2.0197 -0.6927 1.1993 15 6 1.3723 -2.0214 1.3484 16 6 1.5434 -2.3720 2.8421 17 6 1.7162 -1.0150 3.5552 18 1 2.6858 -0.9689 4.0511 19 8 0.6651 -0.8147 4.5022 20 6 0.8375 -1.3515 5.7369 21 6 1.9470 -2.1431 6.0229 22 6 2.0863 -2.6700 7.2904 23 7 1.1854 -2.4316 8.2247 24 6 0.1212 -1.6868 7.9922 25 6 -0.0902 -1.1237 6.7504 26 6 1.6350 0.0413 2.4323 27 1 -0.3632 0.3991 0.9470 28 1 -0.3633 0.6205 -0.8191 29 1 -0.3633 -1.0197 -0.1278 30 1 1.7516 -1.7714 -1.2058 31 1 1.6053 -0.2615 -2.1370 32 1 3.8532 0.4371 -1.3574 33 1 3.9995 -1.0727 -0.4262 34 1 7.2196 -0.8017 -2.1917 35 1 1.8740 -2.7609 0.7244 36 1 0.3149 -1.9600 1.0911 37 1 2.4288 -2.9911 2.9866 38 1 0.6568 -2.8851 3.2145 39 1 2.6881 -2.3418 5.2630 40 1 2.9414 -3.2888 7.5196 41 1 -0.5928 -1.5150 8.7841 42 1 -0.9630 -0.5148 6.5669 43 1 0.6188 0.4254 2.3446 44 1 2.3346 0.8548 2.6244 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172497404.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:42 Heat of formation + Delta-G solvation = -19.424408 kcal Electronic energy + Delta-G solvation = -22956.840147 eV Core-core repulsion = 19680.560543 eV Total energy + Delta-G solvation = -3276.279604 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 3.81 seconds Orbital eigenvalues (eV) -41.80691 -40.51758 -38.92232 -35.98820 -34.51739 -32.40531 -32.16853 -31.58703 -29.94116 -29.18770 -27.09042 -24.83040 -24.27240 -23.89349 -22.75111 -21.79896 -20.45267 -19.42058 -18.37373 -17.82691 -17.15854 -17.03204 -16.56789 -16.50688 -15.87260 -15.66858 -15.50298 -14.96366 -14.64747 -14.57116 -14.50352 -14.40923 -14.16154 -13.74755 -13.32053 -13.15496 -12.92543 -12.80717 -12.63399 -12.39647 -12.31116 -12.26901 -12.05666 -11.82340 -11.59260 -11.39858 -11.23432 -10.94069 -10.54214 -10.49071 -10.20396 -9.86501 -9.26221 -8.13994 -6.24262 0.14035 0.33836 1.40044 1.41147 1.51949 1.88496 2.43357 2.84986 3.13118 3.18711 3.40678 3.53746 3.57921 3.74770 3.83808 3.99636 4.00887 4.15715 4.23800 4.27882 4.32672 4.42373 4.47860 4.57276 4.69084 4.71368 4.74550 4.81994 4.86759 4.93041 4.94287 5.00408 5.03538 5.11979 5.12504 5.29181 5.44027 5.57878 5.59664 5.86425 5.91733 6.01301 6.15019 6.23955 6.33890 6.95436 7.03879 7.43894 8.97256 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.024972 B = 0.003027 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.968574 B = 9248.078456 C = 9970.623035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.075 3.925 3 H 0.070 0.930 4 C -0.088 4.088 5 C 0.039 3.961 6 C -0.542 4.542 7 H 0.055 0.945 8 C 0.000 4.000 9 N -0.932 5.932 10 Si 0.959 3.041 11 H -0.273 1.273 12 H -0.283 1.283 13 H -0.264 1.264 14 N -0.511 5.511 15 C 0.028 3.972 16 C -0.137 4.137 17 C 0.086 3.914 18 H 0.090 0.910 19 O -0.309 6.309 20 C 0.157 3.843 21 C -0.265 4.265 22 C 0.128 3.872 23 N -0.535 5.535 24 C 0.128 3.872 25 C -0.213 4.213 26 C 0.036 3.964 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.049 0.951 31 H 0.053 0.947 32 H -0.021 1.021 33 H 0.004 0.996 34 H 0.261 0.739 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.147 0.853 40 H 0.177 0.823 41 H 0.189 0.811 42 H 0.156 0.844 43 H 0.070 0.930 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.400 -1.282 17.057 22.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.033 4.033 3 H 0.089 0.911 4 C -0.125 4.125 5 C 0.002 3.998 6 C -0.580 4.580 7 H 0.073 0.927 8 C -0.198 4.198 9 N -0.572 5.572 10 Si 0.784 3.216 11 H -0.199 1.199 12 H -0.209 1.209 13 H -0.189 1.189 14 N -0.235 5.235 15 C -0.100 4.100 16 C -0.175 4.175 17 C 0.029 3.971 18 H 0.108 0.892 19 O -0.220 6.220 20 C 0.103 3.897 21 C -0.286 4.286 22 C -0.028 4.028 23 N -0.248 5.248 24 C -0.027 4.027 25 C -0.233 4.233 26 C -0.092 4.092 27 H 0.085 0.915 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.067 0.933 31 H 0.071 0.929 32 H -0.003 1.003 33 H 0.023 0.977 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.165 0.835 40 H 0.194 0.806 41 H 0.206 0.794 42 H 0.174 0.826 43 H 0.088 0.912 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -13.690 -1.517 17.708 22.434 hybrid contribution 0.080 0.112 -1.814 1.819 sum -13.609 -1.405 15.894 20.972 Atomic orbital electron populations 1.22404 0.95705 1.02666 1.02758 1.21807 0.93559 0.97771 0.90176 0.91146 1.21463 0.96795 0.98980 0.95299 1.18820 0.91847 0.94084 0.95055 1.21786 0.92446 1.34407 1.09372 0.92700 1.25928 0.97446 0.96520 0.99886 1.70115 1.02575 1.45632 1.38884 0.85540 0.77592 0.78982 0.79475 1.19908 1.20853 1.18877 1.65616 1.53858 1.02906 1.01166 1.23164 0.98546 0.92014 0.96247 1.22832 1.03540 0.96503 0.94662 1.23193 0.89758 0.95884 0.88215 0.89171 1.86085 1.44622 1.71924 1.19361 1.19636 0.94064 0.90945 0.85075 1.22470 1.00593 1.04433 1.01086 1.22953 0.97082 0.94950 0.87809 1.67780 1.04231 1.17141 1.35662 1.23109 0.94081 0.90162 0.95362 1.21778 1.02079 1.06664 0.92790 1.23116 1.01548 0.96072 0.88461 0.91469 0.91158 0.91812 0.93270 0.92873 1.00259 0.97729 0.93021 0.91191 0.91746 0.89687 0.89561 0.83529 0.80587 0.79371 0.82596 0.91180 0.89300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.39 8.27 71.98 0.60 -3.80 16 2 C 0.08 2.46 2.37 44.92 0.11 2.56 16 3 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 4 C -0.09 -3.55 4.61 30.60 0.14 -3.41 16 5 C 0.04 2.08 4.86 29.85 0.15 2.22 16 6 C -0.54 -31.28 9.11 25.60 0.23 -31.05 16 7 H 0.05 3.04 7.74 -2.91 -0.02 3.02 16 8 C 0.00 -0.02 5.46 84.66 0.46 0.44 16 9 N -0.93 -57.63 13.29 21.45 0.28 -57.34 16 10 Si 0.96 44.86 29.54 68.60 2.03 46.88 16 11 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 12 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 13 H -0.26 -11.81 7.11 99.48 0.71 -11.11 16 14 N -0.51 -16.13 4.82 -856.36 -4.13 -20.26 16 15 C 0.03 0.77 5.48 86.45 0.47 1.24 16 16 C -0.14 -3.13 6.10 31.49 0.19 -2.94 16 17 C 0.09 1.96 2.93 31.49 0.09 2.05 16 18 H 0.09 2.00 6.50 -2.39 -0.02 1.99 16 19 O -0.31 -6.92 9.77 -90.54 -0.88 -7.80 16 20 C 0.16 3.25 6.67 22.77 0.15 3.40 16 21 C -0.27 -5.13 8.84 22.45 0.20 -4.93 16 22 C 0.13 2.37 11.17 84.61 0.95 3.31 16 23 N -0.53 -10.84 10.36 -196.08 -2.03 -12.87 16 24 C 0.13 2.10 11.17 84.61 0.95 3.05 16 25 C -0.21 -3.70 10.08 22.46 0.23 -3.47 16 26 C 0.04 0.92 6.09 86.45 0.53 1.44 16 27 H 0.07 1.48 5.97 -2.39 -0.01 1.47 16 28 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.06 1.53 6.34 -2.39 -0.02 1.52 16 30 H 0.05 1.96 7.02 -2.39 -0.02 1.94 16 31 H 0.05 2.09 8.14 -2.38 -0.02 2.08 16 32 H -0.02 -1.23 8.14 -2.38 -0.02 -1.25 16 33 H 0.00 0.25 7.75 -2.39 -0.02 0.23 16 34 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 35 H 0.07 2.20 7.63 -2.39 -0.02 2.18 16 36 H 0.06 1.61 5.43 -2.39 -0.01 1.60 16 37 H 0.08 1.89 8.12 -2.39 -0.02 1.87 16 38 H 0.09 1.79 7.98 -2.39 -0.02 1.77 16 39 H 0.15 2.61 5.92 -2.91 -0.02 2.60 16 40 H 0.18 2.36 8.06 -2.91 -0.02 2.34 16 41 H 0.19 1.79 8.06 -2.91 -0.02 1.77 16 42 H 0.16 2.11 8.06 -2.91 -0.02 2.08 16 43 H 0.07 1.66 5.76 -2.39 -0.01 1.65 16 44 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 Total: -1.00 -68.43 347.68 1.68 -66.74 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: 0.98 Total: 14.51 kcal Atomic # 6 Polarization: -35.30 SS G_CDS: 5.44 Total: -29.86 kcal Atomic # 7 Polarization: -84.60 SS G_CDS: -5.87 Total: -90.47 kcal Atomic # 8 Polarization: -6.92 SS G_CDS: -0.88 Total: -7.80 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.88 kcal Total: -68.43 1.68 -66.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172497404.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.318 kcal (2) G-P(sol) polarization free energy of solvation -68.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.81 seconds