Wall clock time and date at job start Tue Mar 31 2020 07:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47142 * 2 1 4 4 C 1.52991 * 109.47272 * 239.99930 * 2 1 3 5 5 C 1.52998 * 109.47051 * 174.44676 * 4 2 1 6 6 C 1.50705 * 109.47157 * 175.23546 * 5 4 2 7 7 H 1.07999 * 120.00134 * 359.97438 * 6 5 4 8 8 C 1.37881 * 119.99739 * 180.02562 * 6 5 4 9 9 N 1.31506 * 120.00103 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 119.99565 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47499 * 59.99851 * 10 8 6 12 12 H 1.48504 * 109.47117 * 179.97438 * 10 8 6 13 13 H 1.48507 * 109.47433 * 299.99834 * 10 8 6 14 14 N 1.46903 * 109.46699 * 119.99863 * 2 1 3 15 15 C 1.47447 * 110.99910 * 296.91540 * 14 2 1 16 16 C 1.54316 * 107.23015 * 123.26101 * 15 14 2 17 17 C 1.55144 * 103.02226 * 22.28122 * 16 15 14 18 18 H 1.08995 * 110.98657 * 82.44177 * 17 16 15 19 19 O 1.42901 * 110.98987 * 206.21757 * 17 16 15 20 20 C 1.35736 * 116.99830 * 268.54849 * 19 17 16 21 21 C 1.39269 * 120.85014 * 359.71561 * 20 19 17 22 22 C 1.37970 * 119.09205 * 179.77847 * 21 20 19 23 23 N 1.31964 * 120.82368 * 0.51342 * 22 21 20 24 24 C 1.31960 * 121.86188 * 359.73733 * 23 22 21 25 25 C 1.37974 * 120.82557 * 0.02562 * 24 23 22 26 26 C 1.47845 * 111.00053 * 57.75686 * 14 2 1 27 27 H 1.09003 * 109.47463 * 293.06943 * 1 2 3 28 28 H 1.08998 * 109.47438 * 173.06479 * 1 2 3 29 29 H 1.09009 * 109.46762 * 53.06620 * 1 2 3 30 30 H 1.09004 * 109.46967 * 294.44281 * 4 2 1 31 31 H 1.08993 * 109.47680 * 54.44254 * 4 2 1 32 32 H 1.09004 * 109.47367 * 295.22807 * 5 4 2 33 33 H 1.08997 * 109.47237 * 55.23382 * 5 4 2 34 34 H 0.97005 * 119.99838 * 180.02562 * 9 8 6 35 35 H 1.08997 * 109.88508 * 242.66293 * 15 14 2 36 36 H 1.08997 * 109.89012 * 3.69235 * 15 14 2 37 37 H 1.09005 * 110.70628 * 140.67037 * 16 15 14 38 38 H 1.09003 * 110.70422 * 263.89835 * 16 15 14 39 39 H 1.07999 * 120.45096 * 0.02562 * 21 20 19 40 40 H 1.08002 * 119.59161 * 180.27484 * 22 21 20 41 41 H 1.07999 * 119.58610 * 180.02562 * 24 23 22 42 42 H 1.07995 * 120.45292 * 180.02562 * 25 24 23 43 43 H 1.08994 * 110.37271 * 332.46811 * 26 14 2 44 44 H 1.09000 * 110.37105 * 94.80779 * 26 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 6 3.5636 -0.6014 -1.3209 6 6 4.0768 -1.4091 -2.4851 7 1 3.3854 -1.9537 -3.1110 8 6 5.4291 -1.4535 -2.7506 9 7 6.2710 -0.7908 -1.9881 10 14 6.0652 -2.4552 -4.1933 11 1 5.4689 -1.9427 -5.4530 12 1 7.5440 -2.3389 -4.2630 13 1 5.6883 -3.8801 -4.0112 14 7 2.0196 -0.6925 1.1995 15 6 1.6082 0.0176 2.4245 16 6 0.8197 -0.9861 3.2917 17 6 1.3146 -2.3616 2.7719 18 1 2.2608 -2.6373 3.2374 19 8 0.3286 -3.3739 2.9839 20 6 0.3997 -4.0693 4.1475 21 6 1.3985 -3.8006 5.0801 22 6 1.4340 -4.5264 6.2529 23 7 0.5436 -5.4709 6.4908 24 6 -0.4142 -5.7580 5.6298 25 6 -0.5204 -5.0740 4.4362 26 6 1.5019 -2.0760 1.2610 27 1 -0.3634 0.4027 0.9455 28 1 -0.3634 -1.0201 -0.1241 29 1 -0.3633 0.6176 -0.8215 30 1 1.7602 -1.7736 -1.2008 31 1 1.5978 -0.2682 -2.1364 32 1 3.8400 0.4445 -1.4544 33 1 4.0016 -0.9778 -0.3964 34 1 7.2223 -0.8218 -2.1751 35 1 2.4886 0.3637 2.9658 36 1 0.9746 0.8660 2.1662 37 1 1.0660 -0.8612 4.3462 38 1 -0.2527 -0.8761 3.1298 39 1 2.1328 -3.0319 4.8896 40 1 2.2024 -4.3217 6.9838 41 1 -1.1240 -6.5382 5.8623 42 1 -1.3070 -5.3137 3.7361 43 1 0.5472 -2.1473 0.7401 44 1 2.2231 -2.7705 0.8301 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172497405.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:52 Heat of formation + Delta-G solvation = 0.398190 kcal Electronic energy + Delta-G solvation = -23093.125888 eV Core-core repulsion = 19817.705857 eV Total energy + Delta-G solvation = -3275.420032 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.92414 -39.56978 -37.94556 -34.42811 -32.66054 -31.57484 -31.40018 -29.72496 -28.87981 -28.27512 -25.13527 -24.08168 -23.46650 -22.28874 -21.22633 -20.79623 -19.15608 -18.69267 -17.06950 -16.21334 -16.14893 -15.85984 -15.48074 -15.17162 -14.77719 -14.56803 -14.20904 -13.88951 -13.74378 -13.68531 -13.37968 -12.94773 -12.63696 -12.46219 -11.95024 -11.82455 -11.68280 -11.49578 -11.26539 -11.12857 -10.95671 -10.81357 -10.63357 -10.47825 -10.21274 -9.77173 -9.67611 -9.46664 -9.24536 -9.00742 -8.93379 -8.26264 -7.94491 -5.91259 -3.92834 0.87502 1.14483 2.76386 3.36708 3.41207 3.43560 3.60498 4.16941 4.23880 4.44906 4.46469 4.51886 4.57054 4.64737 4.82937 4.96460 5.05774 5.17622 5.29684 5.34081 5.41757 5.44203 5.52279 5.53837 5.60591 5.63708 5.65592 5.80035 5.90258 5.99893 6.03502 6.15635 6.23339 6.32267 6.34853 6.57724 6.80652 7.05839 7.21002 7.26442 7.40271 7.78347 7.81073 8.02237 8.17542 8.53439 9.15630 9.70030 11.19671 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.017312 B = 0.003439 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.946304 B = 8140.822265 C = 8968.148277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.076 3.924 3 H 0.082 0.918 4 C -0.103 4.103 5 C 0.028 3.972 6 C -0.520 4.520 7 H 0.050 0.950 8 C 0.057 3.943 9 N -0.894 5.894 10 Si 0.887 3.113 11 H -0.278 1.278 12 H -0.288 1.288 13 H -0.278 1.278 14 N -0.502 5.502 15 C 0.040 3.960 16 C -0.160 4.160 17 C 0.068 3.932 18 H 0.095 0.905 19 O -0.297 6.297 20 C 0.178 3.822 21 C -0.263 4.263 22 C 0.135 3.865 23 N -0.515 5.515 24 C 0.131 3.869 25 C -0.210 4.210 26 C 0.049 3.951 27 H 0.049 0.951 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.009 0.991 33 H 0.032 0.968 34 H 0.259 0.741 35 H 0.080 0.920 36 H 0.062 0.938 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.143 0.857 40 H 0.157 0.843 41 H 0.161 0.839 42 H 0.141 0.859 43 H 0.066 0.934 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.948 -3.155 15.025 20.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.032 4.032 3 H 0.100 0.900 4 C -0.141 4.141 5 C -0.009 4.009 6 C -0.559 4.559 7 H 0.068 0.932 8 C -0.143 4.143 9 N -0.534 5.534 10 Si 0.715 3.285 11 H -0.204 1.204 12 H -0.214 1.214 13 H -0.204 1.204 14 N -0.226 5.226 15 C -0.088 4.088 16 C -0.199 4.199 17 C 0.011 3.989 18 H 0.112 0.888 19 O -0.207 6.207 20 C 0.123 3.877 21 C -0.284 4.284 22 C -0.021 4.021 23 N -0.228 5.228 24 C -0.025 4.025 25 C -0.231 4.231 26 C -0.079 4.079 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.028 0.972 33 H 0.051 0.949 34 H 0.069 0.931 35 H 0.098 0.902 36 H 0.080 0.920 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.160 0.840 40 H 0.175 0.825 41 H 0.178 0.822 42 H 0.159 0.841 43 H 0.084 0.916 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -13.296 -3.566 15.574 20.786 hybrid contribution -0.325 0.129 -1.545 1.584 sum -13.621 -3.437 14.029 19.853 Atomic orbital electron populations 1.22559 0.98664 1.01957 1.01401 1.22076 0.91172 0.98791 0.91199 0.89999 1.21722 1.00889 0.98364 0.93123 1.19019 0.87986 0.96591 0.97286 1.21286 0.91925 1.29598 1.13076 0.93165 1.24989 0.97156 0.95780 0.96415 1.69961 1.02524 1.42274 1.38594 0.86748 0.77661 0.80807 0.83270 1.20399 1.21364 1.20363 1.63850 1.56594 1.00650 1.01535 1.22794 0.98576 0.96185 0.91235 1.23269 1.01235 0.94789 1.00582 1.23845 0.90655 0.85679 0.98671 0.88756 1.86094 1.52397 1.47755 1.34433 1.19391 0.92891 0.90139 0.85235 1.22337 1.02163 1.06538 0.97330 1.22580 0.95421 0.89637 0.94454 1.67726 1.04616 1.17169 1.33240 1.22608 0.94654 0.96646 0.88573 1.21528 1.02162 0.98749 1.00678 1.23041 1.00765 0.92158 0.91928 0.93231 0.92410 0.92105 0.93276 0.93214 0.97240 0.94914 0.93135 0.90203 0.91993 0.90543 0.90515 0.83980 0.82540 0.82221 0.84134 0.91642 0.88615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.49 8.54 37.16 0.32 -2.17 16 2 C 0.08 1.24 2.19 -67.71 -0.15 1.09 16 3 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 4 C -0.10 -2.07 4.53 -26.74 -0.12 -2.20 16 5 C 0.03 0.72 4.92 -27.88 -0.14 0.59 16 6 C -0.52 -14.81 9.11 -34.44 -0.31 -15.13 16 7 H 0.05 1.39 7.74 -52.49 -0.41 0.99 16 8 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 9 N -0.89 -27.12 13.29 55.43 0.74 -26.39 16 10 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 13 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 14 N -0.50 -7.87 4.58 -223.30 -1.02 -8.90 16 15 C 0.04 0.50 6.24 -2.83 -0.02 0.48 16 16 C -0.16 -1.73 6.68 -24.91 -0.17 -1.90 16 17 C 0.07 0.84 2.92 -24.59 -0.07 0.77 16 18 H 0.09 1.13 6.01 -51.93 -0.31 0.82 16 19 O -0.30 -3.77 9.96 -18.91 -0.19 -3.96 16 20 C 0.18 2.07 6.74 -38.82 -0.26 1.81 16 21 C -0.26 -2.76 9.09 -39.30 -0.36 -3.12 16 22 C 0.14 1.37 11.17 -17.59 -0.20 1.17 16 23 N -0.51 -5.77 10.36 -13.33 -0.14 -5.91 16 24 C 0.13 1.26 11.17 -17.59 -0.20 1.07 16 25 C -0.21 -2.15 10.08 -39.29 -0.40 -2.55 16 26 C 0.05 0.72 4.89 -2.30 -0.01 0.71 16 27 H 0.05 0.59 6.36 -51.93 -0.33 0.26 16 28 H 0.06 0.78 6.21 -51.93 -0.32 0.45 16 29 H 0.06 0.77 8.14 -51.92 -0.42 0.34 16 30 H 0.05 0.99 7.02 -51.93 -0.36 0.62 16 31 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 33 H 0.03 0.90 7.64 -51.93 -0.40 0.50 16 34 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 35 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.06 0.72 6.26 -51.93 -0.33 0.39 16 37 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.14 1.33 6.02 -52.49 -0.32 1.01 16 40 H 0.16 1.16 8.06 -52.49 -0.42 0.74 16 41 H 0.16 1.04 8.06 -52.49 -0.42 0.62 16 42 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 43 H 0.07 0.96 5.48 -51.93 -0.28 0.67 16 44 H 0.10 1.60 8.09 -51.93 -0.42 1.18 16 LS Contribution 349.10 15.07 5.26 5.26 Total: -1.00 -31.69 349.10 -9.39 -41.08 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -6.84 Total: -0.24 kcal Atomic # 6 Polarization: -15.65 SS G_CDS: -2.18 Total: -17.82 kcal Atomic # 7 Polarization: -40.76 SS G_CDS: -0.43 Total: -41.19 kcal Atomic # 8 Polarization: -3.77 SS G_CDS: -0.19 Total: -3.96 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.69 -9.39 -41.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172497405.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.483 kcal (2) G-P(sol) polarization free energy of solvation -31.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.085 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds