Wall clock time and date at job start Tue Mar 31 2020 07:47:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47142 * 2 1 4 4 C 1.52991 * 109.47272 * 239.99930 * 2 1 3 5 5 C 1.52998 * 109.47051 * 174.44676 * 4 2 1 6 6 C 1.50705 * 109.47157 * 175.23546 * 5 4 2 7 7 H 1.07999 * 120.00134 * 359.97438 * 6 5 4 8 8 C 1.37881 * 119.99739 * 180.02562 * 6 5 4 9 9 N 1.31506 * 120.00103 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 119.99565 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47499 * 59.99851 * 10 8 6 12 12 H 1.48504 * 109.47117 * 179.97438 * 10 8 6 13 13 H 1.48507 * 109.47433 * 299.99834 * 10 8 6 14 14 N 1.46903 * 109.46699 * 119.99863 * 2 1 3 15 15 C 1.47447 * 110.99910 * 296.91540 * 14 2 1 16 16 C 1.54316 * 107.23015 * 123.26101 * 15 14 2 17 17 C 1.55144 * 103.02226 * 22.28122 * 16 15 14 18 18 H 1.08995 * 110.98657 * 82.44177 * 17 16 15 19 19 O 1.42901 * 110.98987 * 206.21757 * 17 16 15 20 20 C 1.35736 * 116.99830 * 268.54849 * 19 17 16 21 21 C 1.39269 * 120.85014 * 359.71561 * 20 19 17 22 22 C 1.37970 * 119.09205 * 179.77847 * 21 20 19 23 23 N 1.31964 * 120.82368 * 0.51342 * 22 21 20 24 24 C 1.31960 * 121.86188 * 359.73733 * 23 22 21 25 25 C 1.37974 * 120.82557 * 0.02562 * 24 23 22 26 26 C 1.47845 * 111.00053 * 57.75686 * 14 2 1 27 27 H 1.09003 * 109.47463 * 293.06943 * 1 2 3 28 28 H 1.08998 * 109.47438 * 173.06479 * 1 2 3 29 29 H 1.09009 * 109.46762 * 53.06620 * 1 2 3 30 30 H 1.09004 * 109.46967 * 294.44281 * 4 2 1 31 31 H 1.08993 * 109.47680 * 54.44254 * 4 2 1 32 32 H 1.09004 * 109.47367 * 295.22807 * 5 4 2 33 33 H 1.08997 * 109.47237 * 55.23382 * 5 4 2 34 34 H 0.97005 * 119.99838 * 180.02562 * 9 8 6 35 35 H 1.08997 * 109.88508 * 242.66293 * 15 14 2 36 36 H 1.08997 * 109.89012 * 3.69235 * 15 14 2 37 37 H 1.09005 * 110.70628 * 140.67037 * 16 15 14 38 38 H 1.09003 * 110.70422 * 263.89835 * 16 15 14 39 39 H 1.07999 * 120.45096 * 0.02562 * 21 20 19 40 40 H 1.08002 * 119.59161 * 180.27484 * 22 21 20 41 41 H 1.07999 * 119.58610 * 180.02562 * 24 23 22 42 42 H 1.07995 * 120.45292 * 180.02562 * 25 24 23 43 43 H 1.08994 * 110.37271 * 332.46811 * 26 14 2 44 44 H 1.09000 * 110.37105 * 94.80779 * 26 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 6 3.5636 -0.6014 -1.3209 6 6 4.0768 -1.4091 -2.4851 7 1 3.3854 -1.9537 -3.1110 8 6 5.4291 -1.4535 -2.7506 9 7 6.2710 -0.7908 -1.9881 10 14 6.0652 -2.4552 -4.1933 11 1 5.4689 -1.9427 -5.4530 12 1 7.5440 -2.3389 -4.2630 13 1 5.6883 -3.8801 -4.0112 14 7 2.0196 -0.6925 1.1995 15 6 1.6082 0.0176 2.4245 16 6 0.8197 -0.9861 3.2917 17 6 1.3146 -2.3616 2.7719 18 1 2.2608 -2.6373 3.2374 19 8 0.3286 -3.3739 2.9839 20 6 0.3997 -4.0693 4.1475 21 6 1.3985 -3.8006 5.0801 22 6 1.4340 -4.5264 6.2529 23 7 0.5436 -5.4709 6.4908 24 6 -0.4142 -5.7580 5.6298 25 6 -0.5204 -5.0740 4.4362 26 6 1.5019 -2.0760 1.2610 27 1 -0.3634 0.4027 0.9455 28 1 -0.3634 -1.0201 -0.1241 29 1 -0.3633 0.6176 -0.8215 30 1 1.7602 -1.7736 -1.2008 31 1 1.5978 -0.2682 -2.1364 32 1 3.8400 0.4445 -1.4544 33 1 4.0016 -0.9778 -0.3964 34 1 7.2223 -0.8218 -2.1751 35 1 2.4886 0.3637 2.9658 36 1 0.9746 0.8660 2.1662 37 1 1.0660 -0.8612 4.3462 38 1 -0.2527 -0.8761 3.1298 39 1 2.1328 -3.0319 4.8896 40 1 2.2024 -4.3217 6.9838 41 1 -1.1240 -6.5382 5.8623 42 1 -1.3070 -5.3137 3.7361 43 1 0.5472 -2.1473 0.7401 44 1 2.2231 -2.7705 0.8301 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172497405.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:49 Heat of formation + Delta-G solvation = -19.274682 kcal Electronic energy + Delta-G solvation = -23093.978968 eV Core-core repulsion = 19817.705857 eV Total energy + Delta-G solvation = -3276.273111 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 2.84 seconds Orbital eigenvalues (eV) -41.79957 -40.58209 -38.93333 -36.00823 -34.48754 -32.47101 -32.18817 -31.39694 -29.94168 -29.41256 -27.01565 -24.96820 -24.28193 -23.65818 -22.56858 -22.03998 -20.40779 -19.65767 -18.37148 -17.99301 -17.02708 -16.83691 -16.53907 -16.39933 -16.11173 -15.72066 -15.45011 -14.81256 -14.75372 -14.61445 -14.52682 -14.36546 -14.14402 -13.77816 -13.51927 -13.09129 -12.88587 -12.80468 -12.67379 -12.51905 -12.35886 -12.22842 -11.94800 -11.79876 -11.61635 -11.46851 -11.24923 -10.92308 -10.55491 -10.48600 -10.21496 -9.86535 -9.12990 -8.14231 -6.24428 0.12836 0.32651 1.39383 1.42134 1.49878 1.84369 2.43014 2.83448 3.08627 3.18313 3.46543 3.49898 3.56753 3.73056 3.80641 3.97248 4.02211 4.12465 4.22359 4.24320 4.34071 4.42269 4.46249 4.58871 4.69764 4.72629 4.76342 4.82881 4.85399 4.91033 4.94069 4.95312 5.06189 5.10625 5.17840 5.30808 5.43354 5.57777 5.59015 5.87076 5.99832 6.06084 6.19132 6.23525 6.33788 6.94872 7.02639 7.43533 8.96801 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.017312 B = 0.003439 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.946304 B = 8140.822265 C = 8968.148277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.081 3.919 3 H 0.075 0.925 4 C -0.092 4.092 5 C 0.038 3.962 6 C -0.543 4.543 7 H 0.053 0.947 8 C 0.001 3.999 9 N -0.931 5.931 10 Si 0.958 3.042 11 H -0.268 1.268 12 H -0.283 1.283 13 H -0.269 1.269 14 N -0.529 5.529 15 C 0.040 3.960 16 C -0.145 4.145 17 C 0.075 3.925 18 H 0.094 0.906 19 O -0.308 6.308 20 C 0.156 3.844 21 C -0.267 4.267 22 C 0.130 3.870 23 N -0.535 5.535 24 C 0.130 3.870 25 C -0.215 4.215 26 C 0.050 3.950 27 H 0.069 0.931 28 H 0.056 0.944 29 H 0.069 0.931 30 H 0.046 0.954 31 H 0.052 0.948 32 H -0.020 1.020 33 H 0.006 0.994 34 H 0.261 0.739 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.096 0.904 38 H 0.082 0.918 39 H 0.151 0.849 40 H 0.180 0.820 41 H 0.190 0.810 42 H 0.154 0.846 43 H 0.068 0.932 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.324 -3.704 15.601 22.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.027 4.027 3 H 0.093 0.907 4 C -0.130 4.130 5 C 0.001 3.999 6 C -0.581 4.581 7 H 0.072 0.928 8 C -0.197 4.197 9 N -0.571 5.571 10 Si 0.783 3.217 11 H -0.193 1.193 12 H -0.208 1.208 13 H -0.194 1.194 14 N -0.254 5.254 15 C -0.087 4.087 16 C -0.184 4.184 17 C 0.018 3.982 18 H 0.112 0.888 19 O -0.218 6.218 20 C 0.102 3.898 21 C -0.288 4.288 22 C -0.026 4.026 23 N -0.248 5.248 24 C -0.026 4.026 25 C -0.236 4.236 26 C -0.078 4.078 27 H 0.088 0.912 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.065 0.935 31 H 0.071 0.929 32 H -0.001 1.001 33 H 0.025 0.975 34 H 0.070 0.930 35 H 0.099 0.901 36 H 0.093 0.907 37 H 0.115 0.885 38 H 0.101 0.899 39 H 0.168 0.832 40 H 0.197 0.803 41 H 0.206 0.794 42 H 0.172 0.828 43 H 0.086 0.914 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -14.691 -4.116 16.158 22.222 hybrid contribution 0.129 0.277 -1.690 1.718 sum -14.562 -3.839 14.467 20.883 Atomic orbital electron populations 1.22419 0.95753 1.02306 1.02906 1.21867 0.93356 0.97641 0.89822 0.90710 1.21522 0.96911 0.98905 0.95633 1.18835 0.91798 0.94051 0.95235 1.21755 0.92534 1.29937 1.13921 0.92825 1.25914 0.97473 0.96909 0.99387 1.70101 1.02861 1.43707 1.40466 0.85614 0.77077 0.79308 0.79706 1.19272 1.20848 1.19427 1.63702 1.57814 1.01336 1.02542 1.22843 0.99168 0.96673 0.90022 1.23181 1.01139 0.92815 1.01245 1.23674 0.91002 0.86708 0.96807 0.88795 1.86054 1.52379 1.48088 1.35310 1.19681 0.94000 0.90864 0.85227 1.22467 1.02106 1.06881 0.97327 1.22981 0.95693 0.89160 0.94772 1.67785 1.05301 1.17719 1.33968 1.23099 0.94624 0.96857 0.87976 1.21779 1.02260 0.98328 1.01217 1.22880 0.99736 0.91266 0.93893 0.91223 0.92471 0.91202 0.93533 0.92906 1.00143 0.97531 0.92993 0.90144 0.90738 0.88528 0.89936 0.83194 0.80304 0.79352 0.82797 0.91436 0.91715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.35 8.54 71.98 0.61 -3.73 16 2 C 0.08 2.65 2.19 44.91 0.10 2.74 16 3 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 4 C -0.09 -3.77 4.53 30.59 0.14 -3.63 16 5 C 0.04 2.03 4.92 29.85 0.15 2.18 16 6 C -0.54 -31.61 9.11 25.60 0.23 -31.38 16 7 H 0.05 3.00 7.74 -2.91 -0.02 2.98 16 8 C 0.00 0.04 5.46 84.66 0.46 0.51 16 9 N -0.93 -57.80 13.29 21.45 0.28 -57.52 16 10 Si 0.96 45.18 29.54 68.60 2.03 47.20 16 11 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 12 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 13 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 14 N -0.53 -16.67 4.58 -860.40 -3.94 -20.61 16 15 C 0.04 0.94 6.24 86.64 0.54 1.48 16 16 C -0.15 -2.86 6.68 31.78 0.21 -2.64 16 17 C 0.07 1.79 2.92 31.98 0.09 1.89 16 18 H 0.09 2.23 6.01 -2.39 -0.01 2.22 16 19 O -0.31 -7.56 9.96 -90.59 -0.90 -8.46 16 20 C 0.16 3.47 6.74 22.77 0.15 3.62 16 21 C -0.27 -5.30 9.09 22.45 0.20 -5.09 16 22 C 0.13 2.43 11.17 84.61 0.95 3.37 16 23 N -0.53 -11.12 10.36 -196.08 -2.03 -13.15 16 24 C 0.13 2.27 11.17 84.61 0.95 3.21 16 25 C -0.22 -4.09 10.08 22.46 0.23 -3.86 16 26 C 0.05 1.50 4.89 86.77 0.42 1.92 16 27 H 0.07 1.46 6.36 -2.39 -0.02 1.45 16 28 H 0.06 1.44 6.21 -2.39 -0.01 1.42 16 29 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 30 H 0.05 1.91 7.02 -2.38 -0.02 1.89 16 31 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 32 H -0.02 -1.16 8.14 -2.39 -0.02 -1.18 16 33 H 0.01 0.37 7.64 -2.39 -0.02 0.35 16 34 H 0.26 15.29 8.31 -92.70 -0.77 14.52 16 35 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.07 1.56 6.26 -2.39 -0.01 1.55 16 37 H 0.10 1.54 8.14 -2.38 -0.02 1.52 16 38 H 0.08 1.56 8.14 -2.39 -0.02 1.55 16 39 H 0.15 2.63 6.02 -2.91 -0.02 2.61 16 40 H 0.18 2.33 8.06 -2.91 -0.02 2.31 16 41 H 0.19 1.99 8.06 -2.91 -0.02 1.96 16 42 H 0.15 2.39 8.06 -2.91 -0.02 2.37 16 43 H 0.07 1.96 5.48 -2.39 -0.01 1.95 16 44 H 0.06 2.29 8.09 -2.39 -0.02 2.27 16 Total: -1.00 -69.32 349.10 1.85 -67.47 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: 0.98 Total: 14.49 kcal Atomic # 6 Polarization: -34.86 SS G_CDS: 5.44 Total: -29.42 kcal Atomic # 7 Polarization: -85.59 SS G_CDS: -5.69 Total: -91.28 kcal Atomic # 8 Polarization: -7.56 SS G_CDS: -0.90 Total: -8.46 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.20 kcal Total: -69.32 1.85 -67.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172497405.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.200 kcal (2) G-P(sol) polarization free energy of solvation -69.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.84 seconds