Wall clock time and date at job start Tue Mar 31 2020 07:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08996 * 109.47587 * 2 1 4 4 C 1.53000 * 109.46819 * 119.99904 * 2 1 3 5 5 C 1.53008 * 109.47163 * 184.99921 * 4 2 1 6 6 C 1.50703 * 109.47151 * 180.02562 * 5 4 2 7 7 H 1.07999 * 119.99687 * 0.02562 * 6 5 4 8 8 C 1.37874 * 119.99910 * 180.02562 * 6 5 4 9 9 N 1.31513 * 120.00229 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 119.99991 * 180.02562 * 8 6 5 11 11 H 1.48507 * 109.47314 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47621 * 120.00041 * 10 8 6 13 13 H 1.48502 * 109.47026 * 239.99951 * 10 8 6 14 14 N 1.46905 * 109.47432 * 239.99768 * 2 1 3 15 15 C 1.47018 * 110.99643 * 306.37033 * 14 2 1 16 16 C 1.53099 * 109.25222 * 182.38804 * 15 14 2 17 17 O 1.43010 * 109.26246 * 303.15319 * 16 15 14 18 18 C 1.43015 * 113.73980 * 58.66745 * 17 16 15 19 19 C 1.47015 * 110.99622 * 69.99929 * 14 2 1 20 20 H 1.08999 * 109.54541 * 297.56649 * 19 14 2 21 21 C 1.50698 * 109.50506 * 57.67736 * 19 14 2 22 22 C 1.38673 * 120.41937 * 219.50282 * 21 19 14 23 23 C 1.38633 * 118.42120 * 179.78270 * 22 21 19 24 24 C 1.38222 * 119.16073 * 0.46789 * 23 22 21 25 25 N 1.31858 * 120.76366 * 359.77180 * 24 23 22 26 26 C 1.31889 * 121.72502 * 0.02562 * 25 24 23 27 27 H 1.09005 * 109.47360 * 300.00232 * 1 2 3 28 28 H 1.09002 * 109.46892 * 60.00071 * 1 2 3 29 29 H 1.08996 * 109.47587 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47547 * 305.00156 * 4 2 1 31 31 H 1.09004 * 109.47365 * 65.00382 * 4 2 1 32 32 H 1.08998 * 109.46777 * 300.00090 * 5 4 2 33 33 H 1.08994 * 109.46532 * 59.99998 * 5 4 2 34 34 H 0.96999 * 120.00288 * 179.97438 * 9 8 6 35 35 H 1.08998 * 109.50436 * 302.32254 * 15 14 2 36 36 H 1.08995 * 109.50849 * 62.45652 * 15 14 2 37 37 H 1.09002 * 109.50591 * 183.20928 * 16 15 14 38 38 H 1.09006 * 109.50796 * 63.08682 * 16 15 14 39 39 H 1.09000 * 109.50314 * 61.27030 * 18 17 16 40 40 H 1.08997 * 109.50250 * 181.35434 * 18 17 16 41 41 H 1.08002 * 120.78948 * 0.02562 * 22 21 19 42 42 H 1.08001 * 120.41566 * 180.21794 * 23 22 21 43 43 H 1.07999 * 119.62174 * 179.74723 * 24 23 22 44 44 H 1.07999 * 119.61216 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.6133 1.3138 6 6 4.0671 -1.3243 2.5440 7 1 3.3686 -1.8053 3.2126 8 6 5.4183 -1.3606 2.8158 9 7 6.2689 -0.7752 2.0012 10 14 6.0410 -2.2424 4.3402 11 1 4.8910 -2.8146 5.0855 12 1 6.9637 -3.3343 3.9383 13 1 6.7632 -1.2788 5.2091 14 7 2.0197 -0.6926 -1.1994 15 6 1.4280 -2.0337 -1.3119 16 6 2.0093 -2.7406 -2.5392 17 8 1.7679 -1.9431 -3.7014 18 6 2.3308 -0.6306 -3.6261 19 6 1.7527 0.0978 -2.4100 20 1 0.6769 0.2196 -2.5360 21 6 2.4007 1.4521 -2.2797 22 6 1.7496 2.5887 -2.7351 23 6 2.3818 3.8139 -2.5903 24 6 3.6354 3.8605 -2.0100 25 7 4.2269 2.7583 -1.5928 26 6 3.6537 1.5764 -1.7107 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.6053 -0.2618 2.1370 31 1 1.7516 -1.7716 1.2056 32 1 3.9993 -1.0729 0.4261 33 1 3.8531 0.4369 1.3574 34 1 7.2194 -0.8004 2.1926 35 1 1.6595 -2.6099 -0.4161 36 1 0.3469 -1.9466 -1.4201 37 1 1.5316 -3.7131 -2.6592 38 1 3.0828 -2.8757 -2.4070 39 1 3.4137 -0.7043 -3.5256 40 1 2.0863 -0.0772 -4.5328 41 1 0.7715 2.5214 -3.1881 42 1 1.9026 4.7201 -2.9304 43 1 4.1365 4.8106 -1.8973 44 1 4.1690 0.6957 -1.3568 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172498522.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:48:07 Heat of formation + Delta-G solvation = -7.773079 kcal Electronic energy + Delta-G solvation = -24422.960390 eV Core-core repulsion = 21147.186025 eV Total energy + Delta-G solvation = -3275.774365 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.62817 -39.14201 -36.75853 -33.88469 -32.93362 -31.83889 -31.35305 -29.57533 -29.04097 -26.45230 -25.06109 -24.45851 -23.41802 -22.06936 -21.68313 -20.31256 -18.97671 -16.99128 -16.60761 -16.21366 -16.16275 -15.93948 -15.20983 -14.72768 -14.66746 -14.39979 -14.05103 -13.90279 -13.57522 -13.25390 -12.92265 -12.83418 -12.64478 -12.19201 -12.01890 -11.80166 -11.51650 -11.40997 -11.24627 -11.05203 -10.87696 -10.45741 -10.41891 -10.14223 -9.85664 -9.66409 -9.50913 -9.24808 -9.13815 -8.88407 -8.69873 -8.24571 -7.94394 -5.88026 -3.89899 1.25949 1.43738 3.36100 3.43858 3.47112 3.85946 3.94293 4.04774 4.53898 4.60882 4.88140 4.94571 4.97989 5.08999 5.13374 5.20122 5.28975 5.34864 5.39348 5.42892 5.47253 5.56176 5.61560 5.68428 5.74785 5.79850 5.96915 6.04699 6.07133 6.13833 6.21041 6.22735 6.30532 6.42731 6.61696 6.79865 6.93183 7.16046 7.22084 7.34887 7.39797 7.84048 8.04139 8.17866 8.27105 8.55877 9.18251 9.73027 11.22405 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.013513 B = 0.005690 C = 0.004732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.511283 B = 4919.623947 C = 5916.172327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.080 3.920 3 H 0.078 0.922 4 C -0.102 4.102 5 C 0.032 3.968 6 C -0.521 4.521 7 H 0.050 0.950 8 C 0.059 3.941 9 N -0.889 5.889 10 Si 0.884 3.116 11 H -0.275 1.275 12 H -0.285 1.285 13 H -0.286 1.286 14 N -0.509 5.509 15 C 0.017 3.983 16 C 0.061 3.939 17 O -0.387 6.387 18 C 0.074 3.926 19 C 0.094 3.906 20 H 0.056 0.944 21 C -0.134 4.134 22 C -0.075 4.075 23 C -0.183 4.183 24 C 0.094 3.906 25 N -0.478 5.478 26 C 0.141 3.859 27 H 0.059 0.941 28 H 0.045 0.955 29 H 0.057 0.943 30 H 0.048 0.952 31 H 0.048 0.952 32 H 0.030 0.970 33 H 0.010 0.990 34 H 0.258 0.742 35 H 0.098 0.902 36 H 0.041 0.959 37 H 0.095 0.905 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.093 0.907 41 H 0.127 0.873 42 H 0.129 0.871 43 H 0.151 0.849 44 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.405 4.260 -12.270 17.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.028 4.028 3 H 0.096 0.904 4 C -0.140 4.140 5 C -0.005 4.005 6 C -0.559 4.559 7 H 0.068 0.932 8 C -0.142 4.142 9 N -0.528 5.528 10 Si 0.713 3.287 11 H -0.200 1.200 12 H -0.211 1.211 13 H -0.212 1.212 14 N -0.234 5.234 15 C -0.111 4.111 16 C -0.016 4.016 17 O -0.306 6.306 18 C -0.003 4.003 19 C -0.016 4.016 20 H 0.073 0.927 21 C -0.136 4.136 22 C -0.101 4.101 23 C -0.203 4.203 24 C -0.063 4.063 25 N -0.186 5.186 26 C -0.016 4.016 27 H 0.078 0.922 28 H 0.064 0.936 29 H 0.076 0.924 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.048 0.952 33 H 0.028 0.972 34 H 0.068 0.932 35 H 0.116 0.884 36 H 0.059 0.941 37 H 0.113 0.887 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.111 0.889 41 H 0.145 0.855 42 H 0.147 0.853 43 H 0.168 0.832 44 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -9.970 4.219 -12.024 16.179 hybrid contribution -1.248 -0.170 0.776 1.480 sum -11.218 4.049 -11.247 16.394 Atomic orbital electron populations 1.22474 0.98720 1.01715 1.01313 1.21925 0.91263 0.98782 0.90802 0.90351 1.21732 1.01029 0.98222 0.92997 1.18989 0.87780 0.96775 0.96957 1.21326 0.91835 1.34215 1.08555 0.93172 1.24979 0.97162 0.95717 0.96389 1.69980 1.02151 1.43981 1.36708 0.86665 0.78817 0.79560 0.83677 1.19966 1.21142 1.21185 1.62407 1.58160 1.01857 1.00961 1.22843 0.97000 0.91159 1.00110 1.22737 1.01176 0.93628 0.84050 1.87938 1.77857 1.25005 1.39788 1.22651 0.98152 0.83087 0.96390 1.21092 0.97698 0.90303 0.92501 0.92662 1.20644 0.96929 0.94726 1.01347 1.21389 0.99397 0.92077 0.97265 1.22019 0.97300 0.98240 1.02765 1.22837 0.92316 0.97312 0.93828 1.67887 1.36199 0.98777 1.15735 1.23055 0.91379 0.95762 0.91412 0.92237 0.93634 0.92419 0.93288 0.93301 0.95198 0.97156 0.93244 0.88399 0.94066 0.88718 0.91695 0.91824 0.88936 0.85486 0.85262 0.83212 0.81109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.54 8.43 37.15 0.31 -2.23 16 2 C 0.08 1.33 1.97 -67.71 -0.13 1.20 16 3 H 0.08 1.43 6.07 -51.93 -0.32 1.12 16 4 C -0.10 -2.05 4.55 -26.73 -0.12 -2.17 16 5 C 0.03 0.81 4.86 -27.88 -0.14 0.68 16 6 C -0.52 -14.74 9.11 -34.44 -0.31 -15.06 16 7 H 0.05 1.39 7.74 -52.49 -0.41 0.99 16 8 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 9 N -0.89 -26.90 13.29 55.43 0.74 -26.16 16 10 Si 0.88 21.91 29.54 -169.99 -5.02 16.89 16 11 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 13 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 14 N -0.51 -7.91 3.28 -219.79 -0.72 -8.64 16 15 C 0.02 0.24 4.80 -3.71 -0.02 0.22 16 16 C 0.06 0.80 7.01 37.21 0.26 1.06 16 17 O -0.39 -5.37 10.83 -35.23 -0.38 -5.75 16 18 C 0.07 0.96 6.27 37.21 0.23 1.20 16 19 C 0.09 1.27 1.95 -68.75 -0.13 1.13 16 20 H 0.06 0.72 6.62 -51.93 -0.34 0.38 16 21 C -0.13 -1.88 3.64 -104.48 -0.38 -2.26 16 22 C -0.07 -0.88 9.82 -39.28 -0.39 -1.27 16 23 C -0.18 -2.08 10.11 -39.44 -0.40 -2.48 16 24 C 0.09 1.27 11.18 -17.55 -0.20 1.08 16 25 N -0.48 -8.33 10.36 -13.25 -0.14 -8.47 16 26 C 0.14 2.41 9.50 -17.55 -0.17 2.24 16 27 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.04 0.58 6.74 -51.93 -0.35 0.23 16 29 H 0.06 0.77 6.38 -51.93 -0.33 0.43 16 30 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.05 0.96 6.30 -51.93 -0.33 0.63 16 32 H 0.03 0.80 7.75 -51.93 -0.40 0.40 16 33 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 35 H 0.10 1.48 6.29 -51.93 -0.33 1.16 16 36 H 0.04 0.55 6.37 -51.93 -0.33 0.22 16 37 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 39 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 41 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 42 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 43 H 0.15 1.62 8.06 -52.49 -0.42 1.19 16 44 H 0.17 3.37 7.72 -52.49 -0.41 2.97 16 LS Contribution 344.74 15.07 5.20 5.20 Total: -1.00 -31.45 344.74 -8.90 -40.35 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -6.90 Total: 1.64 kcal Atomic # 6 Polarization: -13.39 SS G_CDS: -1.67 Total: -15.06 kcal Atomic # 7 Polarization: -43.14 SS G_CDS: -0.12 Total: -43.26 kcal Atomic # 8 Polarization: -5.37 SS G_CDS: -0.38 Total: -5.75 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.45 -8.90 -40.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172498522.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.577 kcal (2) G-P(sol) polarization free energy of solvation -31.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds