Wall clock time and date at job start Tue Mar 31 2020 07:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08996 * 109.47587 * 2 1 4 4 C 1.53000 * 109.46819 * 119.99904 * 2 1 3 5 5 C 1.53008 * 109.47163 * 184.99921 * 4 2 1 6 6 C 1.50703 * 109.47151 * 180.02562 * 5 4 2 7 7 H 1.07999 * 119.99687 * 0.02562 * 6 5 4 8 8 C 1.37874 * 119.99910 * 180.02562 * 6 5 4 9 9 N 1.31513 * 120.00229 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 119.99991 * 180.02562 * 8 6 5 11 11 H 1.48507 * 109.47314 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47621 * 120.00041 * 10 8 6 13 13 H 1.48502 * 109.47026 * 239.99951 * 10 8 6 14 14 N 1.46905 * 109.47432 * 239.99768 * 2 1 3 15 15 C 1.47018 * 110.99643 * 306.37033 * 14 2 1 16 16 C 1.53099 * 109.25222 * 182.38804 * 15 14 2 17 17 O 1.43010 * 109.26246 * 303.15319 * 16 15 14 18 18 C 1.43015 * 113.73980 * 58.66745 * 17 16 15 19 19 C 1.47015 * 110.99622 * 69.99929 * 14 2 1 20 20 H 1.08999 * 109.54541 * 297.56649 * 19 14 2 21 21 C 1.50698 * 109.50506 * 57.67736 * 19 14 2 22 22 C 1.38673 * 120.41937 * 219.50282 * 21 19 14 23 23 C 1.38633 * 118.42120 * 179.78270 * 22 21 19 24 24 C 1.38222 * 119.16073 * 0.46789 * 23 22 21 25 25 N 1.31858 * 120.76366 * 359.77180 * 24 23 22 26 26 C 1.31889 * 121.72502 * 0.02562 * 25 24 23 27 27 H 1.09005 * 109.47360 * 300.00232 * 1 2 3 28 28 H 1.09002 * 109.46892 * 60.00071 * 1 2 3 29 29 H 1.08996 * 109.47587 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47547 * 305.00156 * 4 2 1 31 31 H 1.09004 * 109.47365 * 65.00382 * 4 2 1 32 32 H 1.08998 * 109.46777 * 300.00090 * 5 4 2 33 33 H 1.08994 * 109.46532 * 59.99998 * 5 4 2 34 34 H 0.96999 * 120.00288 * 179.97438 * 9 8 6 35 35 H 1.08998 * 109.50436 * 302.32254 * 15 14 2 36 36 H 1.08995 * 109.50849 * 62.45652 * 15 14 2 37 37 H 1.09002 * 109.50591 * 183.20928 * 16 15 14 38 38 H 1.09006 * 109.50796 * 63.08682 * 16 15 14 39 39 H 1.09000 * 109.50314 * 61.27030 * 18 17 16 40 40 H 1.08997 * 109.50250 * 181.35434 * 18 17 16 41 41 H 1.08002 * 120.78948 * 0.02562 * 22 21 19 42 42 H 1.08001 * 120.41566 * 180.21794 * 23 22 21 43 43 H 1.07999 * 119.62174 * 179.74723 * 24 23 22 44 44 H 1.07999 * 119.61216 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.6133 1.3138 6 6 4.0671 -1.3243 2.5440 7 1 3.3686 -1.8053 3.2126 8 6 5.4183 -1.3606 2.8158 9 7 6.2689 -0.7752 2.0012 10 14 6.0410 -2.2424 4.3402 11 1 4.8910 -2.8146 5.0855 12 1 6.9637 -3.3343 3.9383 13 1 6.7632 -1.2788 5.2091 14 7 2.0197 -0.6926 -1.1994 15 6 1.4280 -2.0337 -1.3119 16 6 2.0093 -2.7406 -2.5392 17 8 1.7679 -1.9431 -3.7014 18 6 2.3308 -0.6306 -3.6261 19 6 1.7527 0.0978 -2.4100 20 1 0.6769 0.2196 -2.5360 21 6 2.4007 1.4521 -2.2797 22 6 1.7496 2.5887 -2.7351 23 6 2.3818 3.8139 -2.5903 24 6 3.6354 3.8605 -2.0100 25 7 4.2269 2.7583 -1.5928 26 6 3.6537 1.5764 -1.7107 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.6053 -0.2618 2.1370 31 1 1.7516 -1.7716 1.2056 32 1 3.9993 -1.0729 0.4261 33 1 3.8531 0.4369 1.3574 34 1 7.2194 -0.8004 2.1926 35 1 1.6595 -2.6099 -0.4161 36 1 0.3469 -1.9466 -1.4201 37 1 1.5316 -3.7131 -2.6592 38 1 3.0828 -2.8757 -2.4070 39 1 3.4137 -0.7043 -3.5256 40 1 2.0863 -0.0772 -4.5328 41 1 0.7715 2.5214 -3.1881 42 1 1.9026 4.7201 -2.9304 43 1 4.1365 4.8106 -1.8973 44 1 4.1690 0.6957 -1.3568 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172498522.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:48:05 Heat of formation + Delta-G solvation = -28.144934 kcal Electronic energy + Delta-G solvation = -24423.843780 eV Core-core repulsion = 21147.186025 eV Total energy + Delta-G solvation = -3276.657754 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 5.04 seconds Orbital eigenvalues (eV) -41.74978 -40.25858 -38.00788 -35.52269 -34.53149 -33.06134 -32.71220 -31.00988 -30.32804 -27.60482 -26.95542 -25.55751 -24.51306 -23.40571 -23.15408 -21.77504 -20.24276 -18.38658 -18.07793 -17.71416 -17.27978 -17.11973 -16.51172 -16.25026 -15.89947 -15.83569 -15.14457 -15.08715 -14.74740 -14.54151 -14.48739 -14.11407 -13.91436 -13.69404 -13.42307 -13.18631 -12.93533 -12.82696 -12.81293 -12.44574 -12.33902 -12.27515 -11.76408 -11.53023 -11.44977 -11.18911 -11.02420 -10.87664 -10.55899 -10.48992 -10.27346 -9.79487 -9.11077 -8.12449 -6.23563 0.19884 0.41137 1.38656 1.38941 1.51716 2.42975 2.73877 2.88463 2.94318 3.19573 3.56014 3.80963 3.86245 3.95375 4.04028 4.06933 4.12296 4.18041 4.24501 4.33548 4.38179 4.41723 4.42680 4.66342 4.69554 4.75265 4.78034 4.80159 4.93489 4.96062 4.98152 5.05136 5.08884 5.20971 5.27513 5.34888 5.43460 5.58869 5.83840 5.87554 6.00959 6.06806 6.17723 6.22000 6.34293 6.96270 7.16602 7.44698 8.98086 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.013513 B = 0.005690 C = 0.004732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.511283 B = 4919.623947 C = 5916.172327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.092 3.908 3 H 0.057 0.943 4 C -0.092 4.092 5 C 0.049 3.951 6 C -0.542 4.542 7 H 0.054 0.946 8 C 0.001 3.999 9 N -0.928 5.928 10 Si 0.958 3.042 11 H -0.262 1.262 12 H -0.279 1.279 13 H -0.282 1.282 14 N -0.534 5.534 15 C 0.019 3.981 16 C 0.063 3.937 17 O -0.389 6.389 18 C 0.076 3.924 19 C 0.101 3.899 20 H 0.076 0.924 21 C -0.132 4.132 22 C -0.068 4.068 23 C -0.164 4.164 24 C 0.079 3.921 25 N -0.527 5.527 26 C 0.114 3.886 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.046 0.954 31 H 0.055 0.945 32 H 0.004 0.996 33 H -0.030 1.030 34 H 0.259 0.741 35 H 0.082 0.918 36 H 0.060 0.940 37 H 0.122 0.878 38 H 0.043 0.957 39 H 0.041 0.959 40 H 0.120 0.880 41 H 0.167 0.833 42 H 0.173 0.827 43 H 0.173 0.827 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.319 4.683 -13.068 19.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.017 4.017 3 H 0.075 0.925 4 C -0.129 4.129 5 C 0.012 3.988 6 C -0.580 4.580 7 H 0.073 0.927 8 C -0.197 4.197 9 N -0.568 5.568 10 Si 0.783 3.217 11 H -0.186 1.186 12 H -0.204 1.204 13 H -0.208 1.208 14 N -0.259 5.259 15 C -0.108 4.108 16 C -0.014 4.014 17 O -0.308 6.308 18 C -0.001 4.001 19 C -0.008 4.008 20 H 0.093 0.907 21 C -0.134 4.134 22 C -0.095 4.095 23 C -0.183 4.183 24 C -0.078 4.078 25 N -0.236 5.236 26 C -0.043 4.043 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.023 0.977 33 H -0.011 1.011 34 H 0.068 0.932 35 H 0.100 0.900 36 H 0.078 0.922 37 H 0.140 0.860 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.138 0.862 41 H 0.184 0.816 42 H 0.191 0.809 43 H 0.190 0.810 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -12.901 4.628 -12.823 18.769 hybrid contribution -0.290 -0.225 0.989 1.055 sum -13.190 4.402 -11.834 18.259 Atomic orbital electron populations 1.22351 0.95653 1.02680 1.02470 1.21601 0.93409 0.96965 0.89683 0.92497 1.21539 0.96963 0.99250 0.95193 1.18716 0.91600 0.93499 0.94980 1.21796 0.92391 1.34339 1.09474 0.92728 1.25917 0.97480 0.96485 0.99786 1.70145 1.02459 1.45375 1.38807 0.85514 0.78433 0.78307 0.79460 1.18614 1.20432 1.20761 1.62278 1.59334 1.02781 1.01498 1.22831 0.97961 0.90233 0.99804 1.22775 1.00193 0.94697 0.83685 1.87933 1.77685 1.25288 1.39884 1.22715 0.96940 0.83138 0.97357 1.21111 0.98517 0.89742 0.91467 0.90677 1.20636 0.95659 0.96087 1.01025 1.21825 1.00532 0.91047 0.96058 1.22455 0.95866 0.99778 1.00250 1.23322 0.93757 0.96840 0.93900 1.67716 1.38267 0.99938 1.17669 1.22459 0.93076 0.94607 0.94142 0.91855 0.91680 0.91493 0.93529 0.92603 0.97742 1.01132 0.93187 0.90008 0.92182 0.85983 0.93828 0.94016 0.86247 0.81595 0.80924 0.81006 0.85798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.36 8.43 71.98 0.61 -3.76 16 2 C 0.09 3.07 1.97 44.91 0.09 3.15 16 3 H 0.06 2.16 6.07 -2.39 -0.01 2.14 16 4 C -0.09 -3.81 4.55 30.60 0.14 -3.67 16 5 C 0.05 2.67 4.86 29.85 0.15 2.81 16 6 C -0.54 -31.80 9.11 25.60 0.23 -31.57 16 7 H 0.05 3.08 7.74 -2.91 -0.02 3.06 16 8 C 0.00 0.06 5.46 84.65 0.46 0.52 16 9 N -0.93 -58.83 13.29 21.45 0.28 -58.55 16 10 Si 0.96 45.87 29.54 68.60 2.03 47.90 16 11 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 12 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 13 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 14 N -0.53 -16.87 3.28 -849.30 -2.79 -19.66 16 15 C 0.02 0.53 4.80 86.31 0.41 0.94 16 16 C 0.06 1.63 7.01 72.02 0.50 2.13 16 17 O -0.39 -10.24 10.83 -148.98 -1.61 -11.85 16 18 C 0.08 1.90 6.27 72.01 0.45 2.35 16 19 C 0.10 2.62 1.95 44.18 0.09 2.71 16 20 H 0.08 1.68 6.62 -2.39 -0.02 1.67 16 21 C -0.13 -3.65 3.64 -19.77 -0.07 -3.72 16 22 C -0.07 -1.40 9.82 22.47 0.22 -1.18 16 23 C -0.16 -3.20 10.11 22.36 0.23 -2.98 16 24 C 0.08 2.09 11.18 84.69 0.95 3.03 16 25 N -0.53 -19.53 10.36 -195.84 -2.03 -21.56 16 26 C 0.11 4.20 9.50 84.67 0.80 5.00 16 27 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 28 H 0.06 1.41 6.74 -2.39 -0.02 1.39 16 29 H 0.07 1.58 6.38 -2.39 -0.02 1.56 16 30 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.06 2.22 6.30 -2.38 -0.02 2.21 16 32 H 0.00 0.25 7.75 -2.39 -0.02 0.23 16 33 H -0.03 -1.83 8.14 -2.39 -0.02 -1.85 16 34 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 35 H 0.08 2.50 6.29 -2.39 -0.02 2.48 16 36 H 0.06 1.43 6.37 -2.39 -0.02 1.42 16 37 H 0.12 2.44 8.14 -2.39 -0.02 2.43 16 38 H 0.04 1.29 8.14 -2.38 -0.02 1.27 16 39 H 0.04 1.22 8.14 -2.39 -0.02 1.21 16 40 H 0.12 2.34 8.14 -2.39 -0.02 2.32 16 41 H 0.17 2.14 8.06 -2.91 -0.02 2.12 16 42 H 0.17 1.89 8.06 -2.91 -0.02 1.87 16 43 H 0.17 3.54 8.06 -2.91 -0.02 3.51 16 44 H 0.12 5.62 7.72 -2.91 -0.02 5.59 16 Total: -1.00 -73.23 344.74 2.11 -71.12 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: 0.97 Total: 16.81 kcal Atomic # 6 Polarization: -29.47 SS G_CDS: 5.26 Total: -24.21 kcal Atomic # 7 Polarization: -95.24 SS G_CDS: -4.53 Total: -99.77 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: -1.61 Total: -11.85 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Total: -73.23 2.11 -71.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172498522.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.975 kcal (2) G-P(sol) polarization free energy of solvation -73.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.04 seconds