Wall clock time and date at job start Tue Mar 31 2020 07:48:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.46957 * 2 1 4 4 C 1.52993 * 109.47335 * 120.00180 * 2 1 3 5 5 C 1.53004 * 109.47642 * 185.42042 * 4 2 1 6 6 C 1.50700 * 109.47313 * 173.79823 * 5 4 2 7 7 H 1.07994 * 119.99820 * 0.02562 * 6 5 4 8 8 C 1.37874 * 119.99674 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00424 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 119.99736 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47228 * 0.02562 * 10 8 6 12 12 H 1.48501 * 109.47049 * 120.00278 * 10 8 6 13 13 H 1.48502 * 109.47105 * 239.99700 * 10 8 6 14 14 N 1.46900 * 109.47344 * 240.00292 * 2 1 3 15 15 C 1.47016 * 110.99948 * 273.87972 * 14 2 1 16 16 C 1.53101 * 109.25713 * 177.60370 * 15 14 2 17 17 O 1.43018 * 109.25772 * 56.84953 * 16 15 14 18 18 C 1.43025 * 113.77254 * 301.35288 * 17 16 15 19 19 C 1.47011 * 111.00329 * 150.24245 * 14 2 1 20 20 H 1.09001 * 109.50741 * 62.41252 * 19 14 2 21 21 C 1.50705 * 109.50638 * 302.32894 * 19 14 2 22 22 C 1.38676 * 120.41845 * 133.68804 * 21 19 14 23 23 C 1.38625 * 118.41865 * 179.75175 * 22 21 19 24 24 C 1.38234 * 119.16240 * 0.24620 * 23 22 21 25 25 N 1.31858 * 120.76169 * 359.97438 * 24 23 22 26 26 C 1.31889 * 121.72515 * 0.02562 * 25 24 23 27 27 H 1.08994 * 109.47302 * 175.24028 * 1 2 3 28 28 H 1.09000 * 109.46868 * 295.24396 * 1 2 3 29 29 H 1.09006 * 109.47168 * 55.24272 * 1 2 3 30 30 H 1.09003 * 109.47233 * 305.42124 * 4 2 1 31 31 H 1.09007 * 109.47241 * 65.41829 * 4 2 1 32 32 H 1.08998 * 109.46617 * 293.80364 * 5 4 2 33 33 H 1.09002 * 109.47002 * 53.79671 * 5 4 2 34 34 H 0.97002 * 120.00360 * 179.97438 * 9 8 6 35 35 H 1.09001 * 109.50349 * 297.53859 * 15 14 2 36 36 H 1.08998 * 109.50646 * 57.67080 * 15 14 2 37 37 H 1.08999 * 109.50244 * 176.78356 * 16 15 14 38 38 H 1.09001 * 109.50682 * 296.91606 * 16 15 14 39 39 H 1.09001 * 109.47001 * 298.68534 * 18 17 16 40 40 H 1.09000 * 109.53949 * 178.55644 * 18 17 16 41 41 H 1.07999 * 120.78974 * 0.02562 * 22 21 19 42 42 H 1.08003 * 120.41935 * 180.23097 * 23 22 21 43 43 H 1.07993 * 119.61523 * 180.02562 * 24 23 22 44 44 H 1.07998 * 119.60978 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2491 5 6 3.5640 -0.6044 1.3192 6 6 4.0526 -1.1805 2.6232 7 1 3.3468 -1.5895 3.3309 8 6 5.4007 -1.1864 2.9121 9 7 6.2603 -0.6896 2.0495 10 14 6.0065 -1.9012 4.5281 11 1 4.8484 -2.3936 5.3165 12 1 6.9335 -3.0285 4.2541 13 1 6.7192 -0.8502 5.2980 14 7 2.0197 -0.6924 -1.1994 15 6 2.1078 -2.1422 -0.9718 16 6 2.5636 -2.8291 -2.2619 17 8 3.8122 -2.2696 -2.6784 18 6 3.7634 -0.8590 -2.9094 19 6 3.3187 -0.1523 -1.6263 20 1 4.0579 -0.3205 -0.8431 21 6 3.1880 1.3265 -1.8856 22 6 4.1302 2.2129 -1.3858 23 6 3.9724 3.5639 -1.6538 24 6 2.8861 3.9801 -2.4005 25 7 2.0072 3.1090 -2.8560 26 6 2.1255 1.8167 -2.6206 27 1 -0.3633 -1.0241 -0.0853 28 1 -0.3633 0.4383 0.9295 29 1 -0.3634 0.5859 -0.8443 30 1 1.5996 -0.2666 2.1365 31 1 1.7581 -1.7732 1.2019 32 1 4.0089 -1.1538 0.4897 33 1 3.8512 0.4452 1.2554 34 1 7.2087 -0.6934 2.2529 35 1 2.8278 -2.3429 -0.1785 36 1 1.1294 -2.5251 -0.6817 37 1 2.6854 -3.8972 -2.0820 38 1 1.8171 -2.6732 -3.0407 39 1 3.0523 -0.6459 -3.7076 40 1 4.7523 -0.5023 -3.1973 41 1 4.9693 1.8587 -0.8055 42 1 4.6890 4.2821 -1.2836 43 1 2.7562 5.0307 -2.6139 44 1 1.3858 1.1333 -3.0106 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172498528.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:48:45 Heat of formation + Delta-G solvation = -3.843591 kcal Electronic energy + Delta-G solvation = -24740.979977 eV Core-core repulsion = 21465.376008 eV Total energy + Delta-G solvation = -3275.603969 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 1.90 seconds Orbital eigenvalues (eV) -40.57781 -39.11237 -36.70807 -33.62927 -33.01202 -31.80376 -31.20935 -29.64350 -29.27541 -26.21687 -25.04210 -24.39304 -23.34278 -22.00299 -21.74455 -20.10126 -19.12225 -16.98594 -16.47261 -16.36918 -16.04716 -15.80374 -15.08942 -14.71347 -14.60329 -14.46643 -13.98439 -13.89362 -13.50864 -12.93745 -12.76643 -12.72950 -12.55598 -12.15680 -11.79376 -11.72467 -11.55470 -11.26003 -11.22792 -11.03023 -10.88041 -10.54127 -10.35376 -10.18351 -9.89037 -9.63323 -9.45648 -9.25441 -9.22347 -9.18681 -8.67093 -8.41682 -7.72271 -6.07101 -4.08838 1.29810 1.51453 3.26028 3.34228 3.37826 3.95484 4.08797 4.19404 4.40547 4.63643 5.00537 5.07590 5.19387 5.27832 5.28931 5.33752 5.38432 5.41904 5.46447 5.58900 5.67675 5.74609 5.78507 5.82372 5.87319 5.93278 6.07617 6.16404 6.18202 6.28127 6.37889 6.40842 6.43336 6.55966 6.61148 6.74534 6.90640 7.01260 7.34695 7.42709 7.44489 7.57178 7.70405 7.91020 8.16263 8.35870 8.96804 9.55645 11.03617 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.013623 B = 0.006029 C = 0.005303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.881539 B = 4642.911397 C = 5278.654299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.075 3.925 3 H 0.072 0.928 4 C -0.143 4.143 5 C 0.018 3.982 6 C -0.521 4.521 7 H 0.053 0.947 8 C 0.059 3.941 9 N -0.893 5.893 10 Si 0.889 3.111 11 H -0.274 1.274 12 H -0.284 1.284 13 H -0.284 1.284 14 N -0.519 5.519 15 C 0.006 3.994 16 C 0.065 3.935 17 O -0.380 6.380 18 C 0.079 3.921 19 C 0.069 3.931 20 H 0.101 0.899 21 C -0.117 4.117 22 C -0.062 4.062 23 C -0.175 4.175 24 C 0.087 3.913 25 N -0.493 5.493 26 C 0.119 3.881 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.056 0.944 32 H 0.027 0.973 33 H 0.012 0.988 34 H 0.260 0.740 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.093 0.907 38 H 0.051 0.949 39 H 0.052 0.948 40 H 0.093 0.907 41 H 0.141 0.859 42 H 0.132 0.868 43 H 0.149 0.851 44 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.170 3.302 -9.854 12.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.033 4.033 3 H 0.090 0.910 4 C -0.181 4.181 5 C -0.018 4.018 6 C -0.559 4.559 7 H 0.072 0.928 8 C -0.142 4.142 9 N -0.532 5.532 10 Si 0.717 3.283 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.210 1.210 14 N -0.244 5.244 15 C -0.122 4.122 16 C -0.012 4.012 17 O -0.299 6.299 18 C 0.001 3.999 19 C -0.040 4.040 20 H 0.118 0.882 21 C -0.119 4.119 22 C -0.088 4.088 23 C -0.194 4.194 24 C -0.070 4.070 25 N -0.201 5.201 26 C -0.038 4.038 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.044 0.956 33 H 0.030 0.970 34 H 0.069 0.931 35 H 0.094 0.906 36 H 0.099 0.901 37 H 0.111 0.889 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.111 0.889 41 H 0.159 0.841 42 H 0.150 0.850 43 H 0.167 0.833 44 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -7.876 3.597 -10.779 13.826 hybrid contribution 1.531 -0.553 2.309 2.825 sum -6.345 3.043 -8.470 11.012 Atomic orbital electron populations 1.21730 0.95234 1.01352 1.00775 1.21842 0.94614 0.98030 0.88817 0.90972 1.22358 1.00365 0.99497 0.95930 1.19344 0.88512 0.96812 0.97136 1.21269 0.92022 1.39426 1.03185 0.92847 1.24982 0.97010 0.95418 0.96784 1.69936 1.02137 1.45936 1.35186 0.86582 0.78825 0.78895 0.83985 1.19821 1.20977 1.21044 1.62533 1.24821 1.03285 1.33749 1.22981 1.02393 0.88390 0.98444 1.22678 0.85829 0.97551 0.95181 1.88006 1.32602 1.21311 1.87940 1.22607 1.01468 0.80874 0.94906 1.21613 0.93543 0.89407 0.99421 0.88166 1.20656 0.96360 0.95928 0.98997 1.21741 0.98490 0.92887 0.95712 1.22101 0.99954 0.96529 1.00852 1.22684 0.90625 0.99254 0.94407 1.67716 1.28219 1.03300 1.20908 1.22626 0.95796 0.91318 0.94048 0.93016 0.92893 0.92956 0.92940 0.92578 0.95554 0.97001 0.93063 0.90615 0.90133 0.88881 0.93045 0.92927 0.88899 0.84138 0.85040 0.83331 0.82594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.90 9.45 37.16 0.35 -1.54 16 2 C 0.07 1.26 2.17 -67.72 -0.15 1.11 16 3 H 0.07 1.33 6.29 -51.93 -0.33 1.00 16 4 C -0.14 -2.84 4.09 -26.73 -0.11 -2.94 16 5 C 0.02 0.45 3.30 -27.88 -0.09 0.35 16 6 C -0.52 -14.31 9.11 -34.44 -0.31 -14.63 16 7 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 8 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 9 N -0.89 -25.73 13.29 55.43 0.74 -24.99 16 10 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 11 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 14 N -0.52 -8.16 3.90 -219.80 -0.86 -9.02 16 15 C 0.01 0.09 4.19 -3.71 -0.02 0.07 16 16 C 0.06 0.92 7.01 37.21 0.26 1.18 16 17 O -0.38 -6.36 10.83 -35.23 -0.38 -6.74 16 18 C 0.08 1.20 6.24 37.21 0.23 1.43 16 19 C 0.07 1.14 1.89 -68.75 -0.13 1.01 16 20 H 0.10 2.06 4.53 -51.93 -0.24 1.82 16 21 C -0.12 -1.81 3.16 -104.48 -0.33 -2.14 16 22 C -0.06 -0.96 9.81 -39.28 -0.39 -1.34 16 23 C -0.17 -2.31 10.11 -39.44 -0.40 -2.71 16 24 C 0.09 1.14 11.18 -17.54 -0.20 0.94 16 25 N -0.49 -7.32 10.36 -13.25 -0.14 -7.46 16 26 C 0.12 1.76 10.07 -17.55 -0.18 1.58 16 27 H 0.05 0.70 7.41 -51.93 -0.38 0.31 16 28 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.06 1.09 6.06 -51.93 -0.31 0.77 16 32 H 0.03 0.68 4.27 -51.93 -0.22 0.46 16 33 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 35 H 0.08 1.46 4.80 -51.93 -0.25 1.21 16 36 H 0.08 1.13 7.22 -51.93 -0.37 0.76 16 37 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.05 0.72 8.02 -51.93 -0.42 0.30 16 40 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 41 H 0.14 2.33 8.04 -52.49 -0.42 1.91 16 42 H 0.13 1.42 8.06 -52.48 -0.42 1.00 16 43 H 0.15 1.48 8.06 -52.49 -0.42 1.06 16 44 H 0.16 2.19 7.92 -52.49 -0.42 1.77 16 LS Contribution 340.20 15.07 5.13 5.13 Total: -1.00 -29.62 340.20 -8.79 -38.41 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -6.71 Total: 4.38 kcal Atomic # 6 Polarization: -14.52 SS G_CDS: -1.55 Total: -16.07 kcal Atomic # 7 Polarization: -41.21 SS G_CDS: -0.26 Total: -41.47 kcal Atomic # 8 Polarization: -6.36 SS G_CDS: -0.38 Total: -6.74 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.62 -8.79 -38.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172498528.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.566 kcal (2) G-P(sol) polarization free energy of solvation -29.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.90 seconds