Wall clock time and date at job start Tue Mar 31 2020 07:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.46957 * 2 1 4 4 C 1.52993 * 109.47335 * 120.00180 * 2 1 3 5 5 C 1.53004 * 109.47642 * 185.42042 * 4 2 1 6 6 C 1.50700 * 109.47313 * 173.79823 * 5 4 2 7 7 H 1.07994 * 119.99820 * 0.02562 * 6 5 4 8 8 C 1.37874 * 119.99674 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00424 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 119.99736 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47228 * 0.02562 * 10 8 6 12 12 H 1.48501 * 109.47049 * 120.00278 * 10 8 6 13 13 H 1.48502 * 109.47105 * 239.99700 * 10 8 6 14 14 N 1.46900 * 109.47344 * 240.00292 * 2 1 3 15 15 C 1.47016 * 110.99948 * 273.87972 * 14 2 1 16 16 C 1.53101 * 109.25713 * 177.60370 * 15 14 2 17 17 O 1.43018 * 109.25772 * 56.84953 * 16 15 14 18 18 C 1.43025 * 113.77254 * 301.35288 * 17 16 15 19 19 C 1.47011 * 111.00329 * 150.24245 * 14 2 1 20 20 H 1.09001 * 109.50741 * 62.41252 * 19 14 2 21 21 C 1.50705 * 109.50638 * 302.32894 * 19 14 2 22 22 C 1.38676 * 120.41845 * 133.68804 * 21 19 14 23 23 C 1.38625 * 118.41865 * 179.75175 * 22 21 19 24 24 C 1.38234 * 119.16240 * 0.24620 * 23 22 21 25 25 N 1.31858 * 120.76169 * 359.97438 * 24 23 22 26 26 C 1.31889 * 121.72515 * 0.02562 * 25 24 23 27 27 H 1.08994 * 109.47302 * 175.24028 * 1 2 3 28 28 H 1.09000 * 109.46868 * 295.24396 * 1 2 3 29 29 H 1.09006 * 109.47168 * 55.24272 * 1 2 3 30 30 H 1.09003 * 109.47233 * 305.42124 * 4 2 1 31 31 H 1.09007 * 109.47241 * 65.41829 * 4 2 1 32 32 H 1.08998 * 109.46617 * 293.80364 * 5 4 2 33 33 H 1.09002 * 109.47002 * 53.79671 * 5 4 2 34 34 H 0.97002 * 120.00360 * 179.97438 * 9 8 6 35 35 H 1.09001 * 109.50349 * 297.53859 * 15 14 2 36 36 H 1.08998 * 109.50646 * 57.67080 * 15 14 2 37 37 H 1.08999 * 109.50244 * 176.78356 * 16 15 14 38 38 H 1.09001 * 109.50682 * 296.91606 * 16 15 14 39 39 H 1.09001 * 109.47001 * 298.68534 * 18 17 16 40 40 H 1.09000 * 109.53949 * 178.55644 * 18 17 16 41 41 H 1.07999 * 120.78974 * 0.02562 * 22 21 19 42 42 H 1.08003 * 120.41935 * 180.23097 * 23 22 21 43 43 H 1.07993 * 119.61523 * 180.02562 * 24 23 22 44 44 H 1.07998 * 119.60978 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2491 5 6 3.5640 -0.6044 1.3192 6 6 4.0526 -1.1805 2.6232 7 1 3.3468 -1.5895 3.3309 8 6 5.4007 -1.1864 2.9121 9 7 6.2603 -0.6896 2.0495 10 14 6.0065 -1.9012 4.5281 11 1 4.8484 -2.3936 5.3165 12 1 6.9335 -3.0285 4.2541 13 1 6.7192 -0.8502 5.2980 14 7 2.0197 -0.6924 -1.1994 15 6 2.1078 -2.1422 -0.9718 16 6 2.5636 -2.8291 -2.2619 17 8 3.8122 -2.2696 -2.6784 18 6 3.7634 -0.8590 -2.9094 19 6 3.3187 -0.1523 -1.6263 20 1 4.0579 -0.3205 -0.8431 21 6 3.1880 1.3265 -1.8856 22 6 4.1302 2.2129 -1.3858 23 6 3.9724 3.5639 -1.6538 24 6 2.8861 3.9801 -2.4005 25 7 2.0072 3.1090 -2.8560 26 6 2.1255 1.8167 -2.6206 27 1 -0.3633 -1.0241 -0.0853 28 1 -0.3633 0.4383 0.9295 29 1 -0.3634 0.5859 -0.8443 30 1 1.5996 -0.2666 2.1365 31 1 1.7581 -1.7732 1.2019 32 1 4.0089 -1.1538 0.4897 33 1 3.8512 0.4452 1.2554 34 1 7.2087 -0.6934 2.2529 35 1 2.8278 -2.3429 -0.1785 36 1 1.1294 -2.5251 -0.6817 37 1 2.6854 -3.8972 -2.0820 38 1 1.8171 -2.6732 -3.0407 39 1 3.0523 -0.6459 -3.7076 40 1 4.7523 -0.5023 -3.1973 41 1 4.9693 1.8587 -0.8055 42 1 4.6890 4.2821 -1.2836 43 1 2.7562 5.0307 -2.6139 44 1 1.3858 1.1333 -3.0106 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172498528.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:48:35 Heat of formation + Delta-G solvation = -22.506473 kcal Electronic energy + Delta-G solvation = -24741.789260 eV Core-core repulsion = 21465.376008 eV Total energy + Delta-G solvation = -3276.413252 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 10.92 seconds Orbital eigenvalues (eV) -41.82199 -40.32161 -38.07740 -35.32609 -34.59191 -33.03711 -32.57332 -31.35660 -30.44542 -27.45437 -26.96482 -25.60619 -24.50165 -23.47545 -23.13705 -21.59527 -20.53091 -18.48765 -18.08095 -17.72105 -17.25566 -17.06430 -16.60401 -16.27748 -16.04099 -15.88254 -15.30160 -15.08567 -14.66125 -14.51158 -14.22608 -13.96399 -13.87230 -13.73233 -13.31988 -13.11964 -13.02065 -12.85427 -12.81239 -12.45716 -12.39768 -12.20697 -11.87811 -11.53054 -11.41684 -11.27042 -11.17607 -10.83041 -10.58811 -10.51538 -10.38186 -9.81780 -9.16720 -8.22087 -6.32483 0.18395 0.33878 1.33994 1.35329 1.47212 2.36535 2.74823 2.91493 2.96426 3.10363 3.56150 3.80427 3.88358 4.01299 4.04607 4.11698 4.15785 4.20221 4.28947 4.35092 4.40687 4.46360 4.51183 4.63143 4.66781 4.73067 4.80640 4.83444 4.95041 4.96233 5.03410 5.08851 5.15824 5.19521 5.25815 5.37879 5.44194 5.49113 5.69881 5.79043 5.82924 6.04241 6.10311 6.21153 6.24907 6.83041 7.04369 7.36036 8.87798 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.013623 B = 0.006029 C = 0.005303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.881539 B = 4642.911397 C = 5278.654299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.083 3.917 3 H 0.054 0.946 4 C -0.132 4.132 5 C 0.034 3.966 6 C -0.544 4.544 7 H 0.052 0.948 8 C 0.007 3.993 9 N -0.923 5.923 10 Si 0.956 3.044 11 H -0.265 1.265 12 H -0.279 1.279 13 H -0.279 1.279 14 N -0.501 5.501 15 C 0.007 3.993 16 C 0.064 3.936 17 O -0.405 6.405 18 C 0.082 3.918 19 C 0.076 3.924 20 H 0.052 0.948 21 C -0.124 4.124 22 C -0.084 4.084 23 C -0.169 4.169 24 C 0.092 3.908 25 N -0.503 5.503 26 C 0.122 3.878 27 H 0.064 0.936 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.045 0.955 31 H 0.062 0.938 32 H 0.011 0.989 33 H -0.021 1.021 34 H 0.262 0.738 35 H 0.034 0.966 36 H 0.103 0.897 37 H 0.109 0.891 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.091 0.909 41 H 0.114 0.886 42 H 0.156 0.844 43 H 0.186 0.814 44 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.886 3.552 -10.475 14.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.026 4.026 3 H 0.072 0.928 4 C -0.171 4.171 5 C -0.002 4.002 6 C -0.582 4.582 7 H 0.070 0.930 8 C -0.192 4.192 9 N -0.563 5.563 10 Si 0.781 3.219 11 H -0.189 1.189 12 H -0.204 1.204 13 H -0.204 1.204 14 N -0.226 5.226 15 C -0.121 4.121 16 C -0.012 4.012 17 O -0.324 6.324 18 C 0.005 3.995 19 C -0.034 4.034 20 H 0.069 0.931 21 C -0.126 4.126 22 C -0.110 4.110 23 C -0.189 4.189 24 C -0.065 4.065 25 N -0.212 5.212 26 C -0.035 4.035 27 H 0.083 0.917 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.064 0.936 31 H 0.080 0.920 32 H 0.029 0.971 33 H -0.002 1.002 34 H 0.071 0.929 35 H 0.052 0.948 36 H 0.121 0.879 37 H 0.127 0.873 38 H 0.095 0.905 39 H 0.093 0.907 40 H 0.110 0.890 41 H 0.132 0.868 42 H 0.173 0.827 43 H 0.203 0.797 44 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -9.606 3.842 -11.401 15.395 hybrid contribution 2.113 -0.590 2.508 3.332 sum -7.493 3.252 -8.892 12.075 Atomic orbital electron populations 1.21651 0.92376 1.02503 1.01631 1.21746 0.96633 0.96580 0.87619 0.92804 1.22223 0.97063 1.00301 0.97518 1.19123 0.91594 0.94092 0.95403 1.21708 0.92501 1.39642 1.04388 0.93020 1.25841 0.97270 0.95763 1.00307 1.70070 1.02401 1.46857 1.37018 0.85537 0.78390 0.78216 0.79751 1.18949 1.20433 1.20436 1.62672 1.23973 1.03333 1.32599 1.23001 1.02388 0.88441 0.98302 1.22850 0.85468 0.98032 0.94841 1.87971 1.34356 1.21969 1.88073 1.22640 1.02068 0.80211 0.94630 1.21412 0.92578 0.90716 0.98654 0.93053 1.20542 0.97037 0.95132 0.99914 1.21706 0.98322 0.94475 0.96528 1.22354 1.00580 0.95682 1.00263 1.23253 0.89564 1.00639 0.93048 1.67783 1.28803 1.03331 1.21268 1.22671 0.95390 0.91700 0.93759 0.91741 0.92409 0.91691 0.93573 0.91980 0.97104 1.00226 0.92947 0.94781 0.87911 0.87347 0.90460 0.90652 0.89036 0.86780 0.82671 0.79730 0.81632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.26 9.45 71.98 0.68 -2.58 16 2 C 0.08 2.77 2.17 44.91 0.10 2.86 16 3 H 0.05 2.02 6.29 -2.39 -0.02 2.01 16 4 C -0.13 -5.39 4.09 30.59 0.13 -5.26 16 5 C 0.03 1.77 3.30 29.85 0.10 1.87 16 6 C -0.54 -30.98 9.11 25.60 0.23 -30.74 16 7 H 0.05 2.88 7.74 -2.91 -0.02 2.86 16 8 C 0.01 0.38 5.46 84.65 0.46 0.84 16 9 N -0.92 -55.36 13.29 21.45 0.28 -55.07 16 10 Si 0.96 44.56 29.54 68.60 2.03 46.58 16 11 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 12 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 13 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 14 N -0.50 -15.65 3.90 -849.30 -3.31 -18.96 16 15 C 0.01 0.20 4.19 86.31 0.36 0.57 16 16 C 0.06 1.74 7.01 72.02 0.50 2.25 16 17 O -0.40 -13.56 10.83 -148.98 -1.61 -15.18 16 18 C 0.08 2.50 6.24 72.01 0.45 2.95 16 19 C 0.08 2.60 1.89 44.18 0.08 2.68 16 20 H 0.05 2.30 4.53 -2.39 -0.01 2.29 16 21 C -0.12 -3.91 3.16 -19.77 -0.06 -3.97 16 22 C -0.08 -2.71 9.81 22.47 0.22 -2.49 16 23 C -0.17 -4.36 10.11 22.36 0.23 -4.13 16 24 C 0.09 2.19 11.18 84.69 0.95 3.13 16 25 N -0.50 -13.96 10.36 -195.84 -2.03 -15.99 16 26 C 0.12 3.45 10.07 84.67 0.85 4.30 16 27 H 0.06 1.54 7.41 -2.39 -0.02 1.52 16 28 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 30 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.06 2.43 6.06 -2.38 -0.01 2.42 16 32 H 0.01 0.60 4.27 -2.39 -0.01 0.59 16 33 H -0.02 -1.17 8.14 -2.39 -0.02 -1.19 16 34 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 35 H 0.03 1.36 4.80 -2.39 -0.01 1.34 16 36 H 0.10 2.69 7.22 -2.39 -0.02 2.68 16 37 H 0.11 2.57 8.14 -2.39 -0.02 2.55 16 38 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.08 1.96 8.02 -2.39 -0.02 1.94 16 40 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 41 H 0.11 4.23 8.04 -2.91 -0.02 4.21 16 42 H 0.16 3.16 8.06 -2.91 -0.02 3.14 16 43 H 0.19 3.01 8.06 -2.91 -0.02 2.99 16 44 H 0.17 4.30 7.92 -2.91 -0.02 4.28 16 Total: -1.00 -66.14 340.20 1.62 -64.51 By element: Atomic # 1 Polarization: 20.85 SS G_CDS: 0.98 Total: 21.83 kcal Atomic # 6 Polarization: -33.01 SS G_CDS: 5.28 Total: -27.73 kcal Atomic # 7 Polarization: -84.97 SS G_CDS: -5.05 Total: -90.02 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: -1.61 Total: -15.18 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.58 kcal Total: -66.14 1.62 -64.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172498528.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.007 kcal (2) G-P(sol) polarization free energy of solvation -66.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 10.92 seconds