Wall clock time and date at job start Tue Mar 31 2020 07:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47342 * 2 1 4 4 C 1.52995 * 109.47232 * 239.99347 * 2 1 3 5 5 C 1.52999 * 109.46932 * 65.64294 * 4 2 1 6 6 C 1.50701 * 109.47065 * 174.71550 * 5 4 2 7 7 H 1.07995 * 120.00091 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00162 * 179.97438 * 6 5 4 9 9 N 1.31518 * 119.99758 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00392 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.46990 * 59.99711 * 10 8 6 12 12 H 1.48497 * 109.47213 * 180.02562 * 10 8 6 13 13 H 1.48509 * 109.46729 * 300.00416 * 10 8 6 14 14 N 1.46906 * 109.46527 * 119.99462 * 2 1 3 15 15 C 1.47022 * 110.99734 * 190.79287 * 14 2 1 16 16 C 1.53099 * 109.25834 * 177.60741 * 15 14 2 17 17 O 1.43020 * 109.25280 * 56.85156 * 16 15 14 18 18 C 1.43012 * 113.74019 * 301.32668 * 17 16 15 19 19 H 1.09007 * 109.50894 * 298.73914 * 18 17 16 20 20 C 1.50704 * 109.50948 * 178.65411 * 18 17 16 21 21 C 1.38653 * 120.78494 * 324.71737 * 20 18 17 22 22 C 1.38201 * 119.15721 * 179.75187 * 21 20 18 23 23 N 1.31867 * 120.76852 * 0.53926 * 22 21 20 24 24 C 1.31869 * 121.72318 * 359.73748 * 23 22 21 25 25 C 1.38206 * 120.76460 * 359.97403 * 24 23 22 26 26 C 1.47010 * 110.99771 * 67.16378 * 14 2 1 27 27 H 1.08998 * 109.46784 * 60.00168 * 1 2 3 28 28 H 1.08996 * 109.47342 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47298 * 300.00485 * 1 2 3 30 30 H 1.09001 * 109.47396 * 305.63971 * 4 2 1 31 31 H 1.09008 * 109.46904 * 185.63914 * 4 2 1 32 32 H 1.09000 * 109.47360 * 294.71910 * 5 4 2 33 33 H 1.09005 * 109.47195 * 54.71824 * 5 4 2 34 34 H 0.97004 * 119.99862 * 179.97438 * 9 8 6 35 35 H 1.08997 * 109.50663 * 297.54492 * 15 14 2 36 36 H 1.09002 * 109.50323 * 57.63173 * 15 14 2 37 37 H 1.08995 * 109.50543 * 176.78128 * 16 15 14 38 38 H 1.08996 * 109.50562 * 296.87245 * 16 15 14 39 39 H 1.07997 * 120.41643 * 0.02562 * 21 20 18 40 40 H 1.08007 * 119.61556 * 180.29220 * 22 21 20 41 41 H 1.07999 * 119.61852 * 180.02562 * 24 23 22 42 42 H 1.07997 * 120.41885 * 179.97438 * 25 24 23 43 43 H 1.08996 * 109.50588 * 302.31909 * 26 14 2 44 44 H 1.09002 * 109.51245 * 62.45793 * 26 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 1.6491 0.0770 -2.4944 6 6 2.2612 -0.5628 -3.7139 7 1 2.8679 -1.4503 -3.6111 8 6 2.0457 -0.0157 -4.9610 9 7 1.3065 1.0648 -5.0862 10 14 2.8038 -0.8091 -6.4727 11 1 2.3076 -2.2028 -6.6017 12 1 2.4245 -0.0341 -7.6813 13 1 4.2826 -0.8208 -6.3366 14 7 2.0196 -0.6924 1.1996 15 6 3.4664 -0.4935 1.3691 16 6 3.9227 -1.1798 2.6594 17 8 3.5689 -2.5646 2.6075 18 6 2.1670 -2.7950 2.4436 19 1 1.6272 -2.3731 3.2914 20 6 1.9060 -4.2773 2.3680 21 6 2.8111 -5.1267 1.7500 22 6 2.5404 -6.4811 1.7046 23 7 1.4326 -6.9657 2.2306 24 6 0.5470 -6.1872 2.8210 25 6 0.7525 -4.8234 2.9097 26 6 1.6929 -2.1250 1.1511 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.5966 -1.7158 -1.3010 31 1 3.1254 -0.8096 -1.2000 32 1 0.5638 0.0856 -2.5946 33 1 2.0134 1.1000 -2.3993 34 1 1.1552 1.4499 -5.9636 35 1 3.9952 -0.9263 0.5200 36 1 3.6827 0.5732 1.4274 37 1 5.0037 -1.0839 2.7600 38 1 3.4345 -0.7105 3.5135 39 1 3.7181 -4.7352 1.3137 40 1 3.2426 -7.1501 1.2292 41 1 -0.3488 -6.6204 3.2407 42 1 0.0234 -4.1909 3.3942 43 1 0.6147 -2.2492 1.0511 44 1 2.1935 -2.5839 0.2985 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172498649.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:49:49 Heat of formation + Delta-G solvation = -14.571053 kcal Electronic energy + Delta-G solvation = -23434.290952 eV Core-core repulsion = 20158.221805 eV Total energy + Delta-G solvation = -3276.069147 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 6.01 seconds Orbital eigenvalues (eV) -40.61754 -39.48821 -36.94420 -33.81484 -33.52564 -31.82138 -31.31944 -30.21436 -28.97165 -26.57048 -25.18286 -24.65363 -23.60530 -22.40905 -21.53715 -20.86523 -18.89450 -17.33741 -16.85871 -16.46811 -16.07583 -15.74697 -15.32405 -15.06505 -14.65992 -14.55457 -14.20957 -14.06579 -13.89100 -13.76906 -13.70556 -12.79876 -12.46741 -12.19217 -11.91509 -11.78780 -11.63909 -11.45586 -11.33815 -10.99647 -10.82769 -10.72927 -10.51507 -10.39655 -10.07146 -9.71319 -9.63224 -9.46821 -9.41359 -9.26809 -9.19783 -8.37131 -8.01899 -6.03051 -4.05652 1.00491 1.07292 3.30468 3.35046 3.37584 3.47266 3.69568 3.96460 4.33876 4.43058 4.55754 4.70930 4.83166 4.94473 5.02414 5.05916 5.13726 5.19758 5.27927 5.32575 5.45688 5.48945 5.57026 5.63257 5.67771 5.74091 5.85329 5.89592 5.91183 5.97712 6.19480 6.24436 6.28476 6.50811 6.55314 6.57837 6.69088 6.96153 7.01006 7.19701 7.30343 7.62292 7.77170 7.83336 7.95832 8.39408 9.00772 9.58563 11.07870 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.014898 B = 0.003997 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.944559 B = 7003.162563 C = 7869.438896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.078 3.922 3 H 0.080 0.920 4 C -0.139 4.139 5 C 0.027 3.973 6 C -0.522 4.522 7 H 0.051 0.949 8 C 0.058 3.942 9 N -0.895 5.895 10 Si 0.890 3.110 11 H -0.277 1.277 12 H -0.286 1.286 13 H -0.277 1.277 14 N -0.532 5.532 15 C 0.012 3.988 16 C 0.068 3.932 17 O -0.379 6.379 18 C 0.134 3.866 19 H 0.077 0.923 20 C -0.034 4.034 21 C -0.144 4.144 22 C 0.095 3.905 23 N -0.487 5.487 24 C 0.095 3.905 25 C -0.163 4.163 26 C 0.026 3.974 27 H 0.070 0.930 28 H 0.048 0.952 29 H 0.051 0.949 30 H 0.048 0.952 31 H 0.047 0.953 32 H 0.019 0.981 33 H 0.014 0.986 34 H 0.261 0.739 35 H 0.051 0.949 36 H 0.086 0.914 37 H 0.098 0.902 38 H 0.058 0.942 39 H 0.139 0.861 40 H 0.156 0.844 41 H 0.156 0.844 42 H 0.136 0.864 43 H 0.087 0.913 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.976 -7.684 18.377 19.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.029 4.029 3 H 0.099 0.901 4 C -0.177 4.177 5 C -0.011 4.011 6 C -0.560 4.560 7 H 0.070 0.930 8 C -0.143 4.143 9 N -0.534 5.534 10 Si 0.718 3.282 11 H -0.203 1.203 12 H -0.212 1.212 13 H -0.203 1.203 14 N -0.256 5.256 15 C -0.117 4.117 16 C -0.009 4.009 17 O -0.298 6.298 18 C 0.076 3.924 19 H 0.095 0.905 20 C -0.043 4.043 21 C -0.163 4.163 22 C -0.061 4.061 23 N -0.196 5.196 24 C -0.061 4.061 25 C -0.182 4.182 26 C -0.102 4.102 27 H 0.089 0.911 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.038 0.962 33 H 0.033 0.967 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.104 0.896 37 H 0.116 0.884 38 H 0.076 0.924 39 H 0.157 0.843 40 H 0.173 0.827 41 H 0.173 0.827 42 H 0.154 0.846 43 H 0.106 0.894 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.644 -8.385 18.628 20.438 hybrid contribution 0.826 0.500 -1.726 1.978 sum 1.469 -7.885 16.902 18.708 Atomic orbital electron populations 1.21821 0.94470 1.01507 1.01845 1.21882 0.95771 0.97887 0.87363 0.90148 1.22250 0.99566 0.99667 0.96251 1.19057 0.96852 0.94846 0.90316 1.21211 1.31279 1.11666 0.91874 0.93044 1.25003 0.95268 0.94992 0.99026 1.69948 1.38728 1.20972 1.23783 0.86690 0.79699 0.79437 0.82384 1.20254 1.21203 1.20268 1.62571 1.13244 1.09817 1.39976 1.22800 0.89280 1.01643 0.97943 1.22678 1.00370 0.81028 0.96820 1.87953 1.22689 1.25153 1.94026 1.20905 0.83246 0.90217 0.98009 0.90493 1.20011 0.94281 0.94649 0.95358 1.22050 1.00646 0.94373 0.99273 1.22792 0.94053 0.93475 0.95791 1.67658 1.02806 1.40366 1.08801 1.22702 0.97830 0.90108 0.95497 1.21957 0.97991 0.96890 1.01409 1.22737 1.02096 0.89113 0.96304 0.91065 0.93277 0.92982 0.93301 0.93418 0.96232 0.96742 0.92932 0.93118 0.89611 0.88397 0.92410 0.84273 0.82668 0.82664 0.84613 0.89444 0.92748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 8.91 37.16 0.33 -1.84 16 2 C 0.08 1.29 2.38 -67.71 -0.16 1.13 16 3 H 0.08 1.37 8.02 -51.93 -0.42 0.95 16 4 C -0.14 -2.79 3.73 -26.73 -0.10 -2.89 16 5 C 0.03 0.68 4.61 -27.88 -0.13 0.55 16 6 C -0.52 -14.77 9.11 -34.44 -0.31 -15.08 16 7 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 8 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 9 N -0.90 -26.74 13.29 55.43 0.74 -26.01 16 10 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 13 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 14 N -0.53 -7.55 4.67 -226.32 -1.06 -8.60 16 15 C 0.01 0.15 5.40 -3.71 -0.02 0.13 16 16 C 0.07 0.74 7.01 37.21 0.26 1.00 16 17 O -0.38 -4.82 9.72 -35.23 -0.34 -5.16 16 18 C 0.13 1.61 3.05 -27.83 -0.08 1.53 16 19 H 0.08 0.86 8.07 -51.92 -0.42 0.44 16 20 C -0.03 -0.40 5.04 -104.32 -0.53 -0.93 16 21 C -0.14 -1.70 9.44 -39.44 -0.37 -2.07 16 22 C 0.10 1.09 11.18 -17.55 -0.20 0.89 16 23 N -0.49 -5.97 10.36 -13.25 -0.14 -6.11 16 24 C 0.10 0.99 11.18 -17.55 -0.20 0.79 16 25 C -0.16 -1.65 9.80 -39.44 -0.39 -2.03 16 26 C 0.03 0.36 4.05 -3.71 -0.02 0.34 16 27 H 0.07 1.23 6.71 -51.93 -0.35 0.88 16 28 H 0.05 0.74 6.54 -51.93 -0.34 0.40 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.05 1.00 6.73 -51.93 -0.35 0.65 16 31 H 0.05 0.98 6.56 -51.92 -0.34 0.64 16 32 H 0.02 0.52 6.85 -51.93 -0.36 0.16 16 33 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 35 H 0.05 0.75 6.65 -51.93 -0.35 0.40 16 36 H 0.09 1.03 8.08 -51.93 -0.42 0.61 16 37 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.14 1.61 7.73 -52.49 -0.41 1.21 16 40 H 0.16 1.38 8.06 -52.48 -0.42 0.96 16 41 H 0.16 1.15 8.06 -52.49 -0.42 0.73 16 42 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 43 H 0.09 1.18 6.41 -51.93 -0.33 0.85 16 44 H 0.05 0.86 6.49 -51.93 -0.34 0.52 16 LS Contribution 346.88 15.07 5.23 5.23 Total: -1.00 -31.35 346.88 -9.51 -40.86 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -6.91 Total: 0.00 kcal Atomic # 6 Polarization: -14.89 SS G_CDS: -2.01 Total: -16.90 kcal Atomic # 7 Polarization: -40.26 SS G_CDS: -0.46 Total: -40.72 kcal Atomic # 8 Polarization: -4.82 SS G_CDS: -0.34 Total: -5.16 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.35 -9.51 -40.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172498649.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.291 kcal (2) G-P(sol) polarization free energy of solvation -31.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.01 seconds