Wall clock time and date at job start Tue Mar 31 2020 07:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47342 * 2 1 4 4 C 1.52995 * 109.47232 * 239.99347 * 2 1 3 5 5 C 1.52999 * 109.46932 * 65.64294 * 4 2 1 6 6 C 1.50701 * 109.47065 * 174.71550 * 5 4 2 7 7 H 1.07995 * 120.00091 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00162 * 179.97438 * 6 5 4 9 9 N 1.31518 * 119.99758 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00392 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.46990 * 59.99711 * 10 8 6 12 12 H 1.48497 * 109.47213 * 180.02562 * 10 8 6 13 13 H 1.48509 * 109.46729 * 300.00416 * 10 8 6 14 14 N 1.46906 * 109.46527 * 119.99462 * 2 1 3 15 15 C 1.47022 * 110.99734 * 190.79287 * 14 2 1 16 16 C 1.53099 * 109.25834 * 177.60741 * 15 14 2 17 17 O 1.43020 * 109.25280 * 56.85156 * 16 15 14 18 18 C 1.43012 * 113.74019 * 301.32668 * 17 16 15 19 19 H 1.09007 * 109.50894 * 298.73914 * 18 17 16 20 20 C 1.50704 * 109.50948 * 178.65411 * 18 17 16 21 21 C 1.38653 * 120.78494 * 324.71737 * 20 18 17 22 22 C 1.38201 * 119.15721 * 179.75187 * 21 20 18 23 23 N 1.31867 * 120.76852 * 0.53926 * 22 21 20 24 24 C 1.31869 * 121.72318 * 359.73748 * 23 22 21 25 25 C 1.38206 * 120.76460 * 359.97403 * 24 23 22 26 26 C 1.47010 * 110.99771 * 67.16378 * 14 2 1 27 27 H 1.08998 * 109.46784 * 60.00168 * 1 2 3 28 28 H 1.08996 * 109.47342 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47298 * 300.00485 * 1 2 3 30 30 H 1.09001 * 109.47396 * 305.63971 * 4 2 1 31 31 H 1.09008 * 109.46904 * 185.63914 * 4 2 1 32 32 H 1.09000 * 109.47360 * 294.71910 * 5 4 2 33 33 H 1.09005 * 109.47195 * 54.71824 * 5 4 2 34 34 H 0.97004 * 119.99862 * 179.97438 * 9 8 6 35 35 H 1.08997 * 109.50663 * 297.54492 * 15 14 2 36 36 H 1.09002 * 109.50323 * 57.63173 * 15 14 2 37 37 H 1.08995 * 109.50543 * 176.78128 * 16 15 14 38 38 H 1.08996 * 109.50562 * 296.87245 * 16 15 14 39 39 H 1.07997 * 120.41643 * 0.02562 * 21 20 18 40 40 H 1.08007 * 119.61556 * 180.29220 * 22 21 20 41 41 H 1.07999 * 119.61852 * 180.02562 * 24 23 22 42 42 H 1.07997 * 120.41885 * 179.97438 * 25 24 23 43 43 H 1.08996 * 109.50588 * 302.31909 * 26 14 2 44 44 H 1.09002 * 109.51245 * 62.45793 * 26 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 1.6491 0.0770 -2.4944 6 6 2.2612 -0.5628 -3.7139 7 1 2.8679 -1.4503 -3.6111 8 6 2.0457 -0.0157 -4.9610 9 7 1.3065 1.0648 -5.0862 10 14 2.8038 -0.8091 -6.4727 11 1 2.3076 -2.2028 -6.6017 12 1 2.4245 -0.0341 -7.6813 13 1 4.2826 -0.8208 -6.3366 14 7 2.0196 -0.6924 1.1996 15 6 3.4664 -0.4935 1.3691 16 6 3.9227 -1.1798 2.6594 17 8 3.5689 -2.5646 2.6075 18 6 2.1670 -2.7950 2.4436 19 1 1.6272 -2.3731 3.2914 20 6 1.9060 -4.2773 2.3680 21 6 2.8111 -5.1267 1.7500 22 6 2.5404 -6.4811 1.7046 23 7 1.4326 -6.9657 2.2306 24 6 0.5470 -6.1872 2.8210 25 6 0.7525 -4.8234 2.9097 26 6 1.6929 -2.1250 1.1511 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.5966 -1.7158 -1.3010 31 1 3.1254 -0.8096 -1.2000 32 1 0.5638 0.0856 -2.5946 33 1 2.0134 1.1000 -2.3993 34 1 1.1552 1.4499 -5.9636 35 1 3.9952 -0.9263 0.5200 36 1 3.6827 0.5732 1.4274 37 1 5.0037 -1.0839 2.7600 38 1 3.4345 -0.7105 3.5135 39 1 3.7181 -4.7352 1.3137 40 1 3.2426 -7.1501 1.2292 41 1 -0.3488 -6.6204 3.2407 42 1 0.0234 -4.1909 3.3942 43 1 0.6147 -2.2492 1.0511 44 1 2.1935 -2.5839 0.2985 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172498649.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:49:41 Heat of formation + Delta-G solvation = -34.435640 kcal Electronic energy + Delta-G solvation = -23435.152345 eV Core-core repulsion = 20158.221805 eV Total energy + Delta-G solvation = -3276.930540 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 4.21 seconds Orbital eigenvalues (eV) -41.54348 -40.48711 -38.18030 -35.45553 -34.70308 -33.45912 -32.13272 -31.29899 -30.54819 -27.66063 -27.01796 -25.73989 -24.43727 -23.70561 -22.99822 -21.98017 -20.24726 -18.68217 -18.08847 -17.76958 -17.20862 -16.59449 -16.58409 -16.33368 -16.06895 -15.62136 -15.51306 -15.39511 -15.18638 -14.73034 -14.48469 -14.32911 -14.12196 -13.58147 -13.27870 -13.10158 -12.86963 -12.75770 -12.67183 -12.53258 -12.45469 -12.25221 -11.90274 -11.82998 -11.43233 -11.30900 -11.22331 -10.98075 -10.57505 -10.49500 -10.35480 -10.08068 -9.31967 -8.23173 -6.34705 0.18511 0.22175 1.35618 1.37760 1.46038 2.36783 2.59226 2.73155 2.93557 3.09069 3.58917 3.64709 3.81127 3.88293 3.95326 4.02029 4.11911 4.20010 4.21773 4.25210 4.31617 4.41525 4.46034 4.53960 4.70251 4.71833 4.75993 4.82131 4.84983 4.90226 4.94206 4.98940 5.03064 5.14709 5.20827 5.29362 5.34412 5.45859 5.68281 5.75983 5.80780 5.96264 5.99514 6.13801 6.22363 6.81194 7.01213 7.34320 8.87363 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.014898 B = 0.003997 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.944559 B = 7003.162563 C = 7869.438896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.086 3.914 3 H 0.076 0.924 4 C -0.121 4.121 5 C 0.033 3.967 6 C -0.547 4.547 7 H 0.050 0.950 8 C 0.005 3.995 9 N -0.929 5.929 10 Si 0.959 3.041 11 H -0.269 1.269 12 H -0.279 1.279 13 H -0.268 1.268 14 N -0.521 5.521 15 C 0.008 3.992 16 C 0.071 3.929 17 O -0.392 6.392 18 C 0.142 3.858 19 H 0.094 0.906 20 C -0.049 4.049 21 C -0.157 4.157 22 C 0.086 3.914 23 N -0.510 5.510 24 C 0.090 3.910 25 C -0.158 4.158 26 C 0.029 3.971 27 H 0.047 0.953 28 H 0.053 0.947 29 H 0.075 0.925 30 H 0.044 0.956 31 H 0.039 0.961 32 H 0.001 0.999 33 H -0.009 1.009 34 H 0.264 0.736 35 H 0.028 0.972 36 H 0.096 0.904 37 H 0.118 0.882 38 H 0.074 0.926 39 H 0.134 0.866 40 H 0.172 0.828 41 H 0.185 0.815 42 H 0.164 0.836 43 H 0.091 0.909 44 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.924 -8.385 19.704 21.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.022 4.022 3 H 0.094 0.906 4 C -0.160 4.160 5 C -0.004 4.004 6 C -0.585 4.585 7 H 0.068 0.932 8 C -0.193 4.193 9 N -0.569 5.569 10 Si 0.783 3.217 11 H -0.194 1.194 12 H -0.204 1.204 13 H -0.193 1.193 14 N -0.244 5.244 15 C -0.120 4.120 16 C -0.005 4.005 17 O -0.311 6.311 18 C 0.085 3.915 19 H 0.111 0.889 20 C -0.058 4.058 21 C -0.177 4.177 22 C -0.070 4.070 23 N -0.220 5.220 24 C -0.066 4.066 25 C -0.178 4.178 26 C -0.100 4.100 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.094 0.906 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.019 0.981 33 H 0.009 0.991 34 H 0.073 0.927 35 H 0.046 0.954 36 H 0.114 0.886 37 H 0.136 0.864 38 H 0.092 0.908 39 H 0.152 0.848 40 H 0.189 0.811 41 H 0.202 0.798 42 H 0.181 0.819 43 H 0.109 0.891 44 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 0.602 -9.093 19.971 21.952 hybrid contribution 0.832 0.727 -2.121 2.392 sum 1.434 -8.366 17.850 19.765 Atomic orbital electron populations 1.21743 0.93570 1.01858 1.01855 1.21705 0.96476 0.97383 0.86622 0.90557 1.22023 0.99034 0.98946 0.95969 1.18923 0.95298 0.94148 0.92060 1.21639 1.31607 1.11916 0.93363 0.93177 1.25894 0.95615 0.95469 1.02342 1.70069 1.39814 1.22256 1.24732 0.85602 0.79085 0.78658 0.78341 1.19434 1.20423 1.19340 1.62611 1.14112 1.10028 1.37672 1.22924 0.88136 1.02532 0.98441 1.22798 1.01797 0.80078 0.95844 1.87954 1.23113 1.26146 1.93930 1.20864 0.83105 0.90356 0.97220 0.88861 1.20157 0.95066 0.94501 0.96031 1.22101 1.00866 0.94836 0.99906 1.23063 0.94383 0.93649 0.95883 1.67700 1.03415 1.41236 1.09605 1.23239 0.98280 0.90352 0.94750 1.22251 0.97719 0.97182 1.00634 1.22740 1.02082 0.88538 0.96635 0.93356 0.92765 0.90578 0.93777 0.94200 0.98109 0.99063 0.92671 0.95382 0.88553 0.86365 0.90790 0.84842 0.81108 0.79839 0.81885 0.89070 0.95373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.08 8.91 71.98 0.64 -3.44 16 2 C 0.09 2.85 2.38 44.91 0.11 2.95 16 3 H 0.08 2.60 8.02 -2.39 -0.02 2.58 16 4 C -0.12 -5.00 3.73 30.59 0.11 -4.89 16 5 C 0.03 1.75 4.61 29.85 0.14 1.89 16 6 C -0.55 -31.65 9.11 25.60 0.23 -31.42 16 7 H 0.05 2.84 7.74 -2.91 -0.02 2.81 16 8 C 0.01 0.29 5.46 84.65 0.46 0.76 16 9 N -0.93 -56.44 13.29 21.45 0.28 -56.15 16 10 Si 0.96 44.70 29.54 68.60 2.03 46.72 16 11 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 12 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 13 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 14 N -0.52 -14.19 4.67 -869.95 -4.06 -18.26 16 15 C 0.01 0.20 5.40 86.31 0.47 0.66 16 16 C 0.07 1.41 7.01 72.02 0.50 1.91 16 17 O -0.39 -9.36 9.72 -148.98 -1.45 -10.81 16 18 C 0.14 3.17 3.05 29.88 0.09 3.27 16 19 H 0.09 1.80 8.07 -2.38 -0.02 1.78 16 20 C -0.05 -1.08 5.04 -19.67 -0.10 -1.18 16 21 C -0.16 -3.67 9.44 22.36 0.21 -3.46 16 22 C 0.09 1.92 11.18 84.68 0.95 2.87 16 23 N -0.51 -11.91 10.36 -195.84 -2.03 -13.94 16 24 C 0.09 1.69 11.18 84.68 0.95 2.63 16 25 C -0.16 -2.84 9.80 22.36 0.22 -2.62 16 26 C 0.03 0.76 4.05 86.32 0.35 1.11 16 27 H 0.05 1.70 6.71 -2.39 -0.02 1.68 16 28 H 0.05 1.59 6.54 -2.39 -0.02 1.58 16 29 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.04 1.85 6.73 -2.39 -0.02 1.83 16 31 H 0.04 1.69 6.56 -2.38 -0.02 1.67 16 32 H 0.00 0.03 6.85 -2.39 -0.02 0.02 16 33 H -0.01 -0.51 8.14 -2.38 -0.02 -0.53 16 34 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 35 H 0.03 0.83 6.65 -2.39 -0.02 0.81 16 36 H 0.10 2.19 8.08 -2.39 -0.02 2.17 16 37 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.13 3.16 7.73 -2.91 -0.02 3.14 16 40 H 0.17 2.99 8.06 -2.91 -0.02 2.97 16 41 H 0.18 2.20 8.06 -2.91 -0.02 2.18 16 42 H 0.16 1.94 8.06 -2.91 -0.02 1.92 16 43 H 0.09 2.33 6.41 -2.39 -0.02 2.32 16 44 H 0.03 0.90 6.49 -2.39 -0.02 0.88 16 Total: -1.00 -68.00 346.88 1.08 -66.92 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: 0.97 Total: 14.47 kcal Atomic # 6 Polarization: -34.29 SS G_CDS: 5.33 Total: -28.96 kcal Atomic # 7 Polarization: -82.54 SS G_CDS: -5.81 Total: -88.35 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: -1.45 Total: -10.81 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.72 kcal Total: -68.00 1.08 -66.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172498649.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.488 kcal (2) G-P(sol) polarization free energy of solvation -67.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.21 seconds