Wall clock time and date at job start Tue Mar 31 2020 07:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.46971 * 2 1 4 4 C 1.53001 * 109.47056 * 239.99576 * 2 1 3 5 5 C 1.53001 * 109.46630 * 177.76498 * 4 2 1 6 6 C 1.50702 * 109.46511 * 175.34695 * 5 4 2 7 7 H 1.08005 * 120.00250 * 359.97438 * 6 5 4 8 8 C 1.37878 * 119.99792 * 180.02562 * 6 5 4 9 9 N 1.31513 * 120.00358 * 179.97438 * 8 6 5 10 10 Si 1.86802 * 120.00199 * 0.02562 * 8 6 5 11 11 H 1.48501 * 109.47148 * 89.99754 * 10 8 6 12 12 H 1.48493 * 109.47356 * 210.00200 * 10 8 6 13 13 H 1.48504 * 109.46607 * 330.00259 * 10 8 6 14 14 N 1.46904 * 109.46883 * 119.99915 * 2 1 3 15 15 C 1.45384 * 111.00119 * 58.83368 * 14 2 1 16 16 C 1.53462 * 110.74760 * 161.94350 * 15 14 2 17 17 C 1.51380 * 108.15605 * 84.73817 * 16 15 14 18 18 C 1.38700 * 119.96622 * 110.40310 * 17 16 15 19 19 C 1.38526 * 118.03875 * 179.63658 * 18 17 16 20 20 C 1.38921 * 119.05345 * 0.02562 * 19 18 17 21 21 O 1.35675 * 119.58010 * 180.02562 * 20 19 18 22 22 N 1.32298 * 120.83927 * 0.04203 * 20 19 18 23 23 C 1.32163 * 121.33257 * 0.02562 * 22 20 19 24 24 C 1.51570 * 119.56048 * 179.79075 * 23 22 20 25 25 C 1.45377 * 110.99558 * 287.37923 * 14 2 1 26 26 H 1.08998 * 109.47069 * 64.12274 * 1 2 3 27 27 H 1.09004 * 109.47379 * 184.11795 * 1 2 3 28 28 H 1.08997 * 109.47198 * 304.11698 * 1 2 3 29 29 H 1.08997 * 109.47043 * 297.76785 * 4 2 1 30 30 H 1.08999 * 109.46746 * 57.76636 * 4 2 1 31 31 H 1.08994 * 109.47245 * 295.34642 * 5 4 2 32 32 H 1.09004 * 109.47020 * 55.35380 * 5 4 2 33 33 H 0.96992 * 120.00375 * 180.02562 * 9 8 6 34 34 H 1.09000 * 109.22368 * 282.31399 * 15 14 2 35 35 H 1.09004 * 109.21569 * 41.64698 * 15 14 2 36 36 H 1.09001 * 109.75511 * 325.08744 * 16 15 14 37 37 H 1.08997 * 109.77829 * 204.40386 * 16 15 14 38 38 H 1.08001 * 120.97945 * 359.61502 * 18 17 16 39 39 H 1.08002 * 120.47331 * 180.02562 * 19 18 17 40 40 H 0.96699 * 114.00153 * 90.00842 * 21 20 19 41 41 H 1.09002 * 109.69079 * 8.99220 * 24 23 22 42 42 H 1.08997 * 109.69736 * 129.53978 * 24 23 22 43 43 H 1.09003 * 109.18926 * 77.88158 * 25 14 2 44 44 H 1.08999 * 109.19058 * 318.61956 * 25 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5690 -0.6728 -1.2776 6 6 4.0755 -1.4799 -2.4451 7 1 3.3768 -1.9780 -3.1010 8 6 5.4310 -1.5833 -2.6753 9 7 5.8732 -2.2880 -3.6939 10 14 6.6396 -0.7235 -1.5397 11 1 7.0104 -1.6365 -0.4288 12 1 7.8580 -0.3524 -2.3031 13 1 6.0109 0.5020 -0.9844 14 7 2.0197 -0.6925 1.1995 15 6 1.5311 -2.0610 1.2470 16 6 2.3704 -2.9045 2.2160 17 6 1.8202 -2.7061 3.6123 18 6 1.1604 -3.7455 4.2512 19 6 0.6798 -3.5226 5.5311 20 6 0.8754 -2.2788 6.1181 21 8 0.4096 -2.0491 7.3715 22 7 1.5098 -1.3154 5.4704 23 6 1.9771 -1.5011 4.2481 24 6 2.6936 -0.3679 3.5413 25 6 1.8110 0.1162 2.3894 26 1 -0.3633 0.4485 -0.9246 27 1 -0.3634 -1.0250 0.0738 28 1 -0.3633 0.5764 0.8508 29 1 1.7097 -1.7599 -1.2293 30 1 1.6443 -0.2312 -2.1387 31 1 3.8978 0.3613 -1.3807 32 1 3.9630 -1.0886 -0.3502 33 1 6.8267 -2.3610 -3.8556 34 1 0.4925 -2.0600 1.5781 35 1 1.5885 -2.4972 0.2497 36 1 3.4103 -2.5800 2.1813 37 1 2.3041 -3.9572 1.9412 38 1 1.0251 -4.7003 3.7649 39 1 0.1605 -4.3047 6.0651 40 1 1.0421 -2.2618 8.0714 41 1 2.8667 0.4501 4.2406 42 1 3.6464 -0.7236 3.1491 43 1 0.7649 0.0503 2.6885 44 1 2.0536 1.1546 2.1640 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172499719.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:45:43 Heat of formation + Delta-G solvation = -9.040976 kcal Electronic energy + Delta-G solvation = -23740.372654 eV Core-core repulsion = 20464.543309 eV Total energy + Delta-G solvation = -3275.829345 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 4.01 seconds Orbital eigenvalues (eV) -40.98690 -38.93438 -37.31679 -34.34624 -33.73981 -32.75595 -31.17146 -30.60315 -29.37587 -26.63048 -25.43273 -24.67777 -23.33714 -21.81487 -21.25964 -20.52357 -19.05585 -18.72743 -17.08919 -16.58480 -16.17235 -15.80584 -15.44365 -15.05692 -14.63236 -14.23207 -13.99384 -13.68654 -13.43834 -12.98391 -12.87231 -12.80013 -12.56120 -12.28707 -12.06595 -11.87270 -11.81748 -11.72529 -11.47171 -11.30208 -11.05315 -10.76357 -10.63102 -10.31480 -9.90365 -9.87457 -9.58595 -9.50214 -9.44787 -9.02795 -8.72194 -8.44316 -7.81148 -5.95931 -3.92197 0.86062 1.06315 3.28914 3.38129 3.45205 3.51493 3.60444 4.03919 4.37943 4.54230 4.54972 4.79245 4.82341 5.06419 5.12983 5.25592 5.27602 5.39111 5.40045 5.45043 5.50812 5.57563 5.58278 5.61376 5.67597 5.82511 5.93970 5.96536 6.10142 6.14931 6.18063 6.21613 6.24798 6.30472 6.46994 6.52604 6.72628 7.06458 7.26990 7.43538 7.51321 7.61554 7.69475 7.80886 7.92612 8.63770 9.10140 9.68316 11.17882 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.020816 B = 0.004142 C = 0.003920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.781757 B = 6758.086807 C = 7141.812112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.088 3.912 3 H 0.078 0.922 4 C -0.097 4.097 5 C -0.007 4.007 6 C -0.517 4.517 7 H 0.067 0.933 8 C 0.064 3.936 9 N -0.910 5.910 10 Si 0.881 3.119 11 H -0.278 1.278 12 H -0.292 1.292 13 H -0.264 1.264 14 N -0.553 5.553 15 C 0.074 3.926 16 C -0.077 4.077 17 C -0.134 4.134 18 C -0.059 4.059 19 C -0.191 4.191 20 C 0.297 3.703 21 O -0.485 6.485 22 N -0.500 5.500 23 C 0.157 3.843 24 C -0.071 4.071 25 C 0.082 3.918 26 H 0.060 0.940 27 H 0.054 0.946 28 H 0.045 0.955 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.009 0.991 32 H 0.028 0.972 33 H 0.261 0.739 34 H 0.025 0.975 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.080 0.920 38 H 0.141 0.859 39 H 0.137 0.863 40 H 0.397 0.603 41 H 0.086 0.914 42 H 0.099 0.901 43 H 0.026 0.974 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.150 -0.560 18.596 21.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.019 4.019 3 H 0.096 0.904 4 C -0.134 4.134 5 C -0.044 4.044 6 C -0.555 4.555 7 H 0.085 0.915 8 C -0.136 4.136 9 N -0.549 5.549 10 Si 0.709 3.291 11 H -0.204 1.204 12 H -0.219 1.219 13 H -0.189 1.189 14 N -0.277 5.277 15 C -0.053 4.053 16 C -0.115 4.115 17 C -0.135 4.135 18 C -0.085 4.085 19 C -0.212 4.212 20 C 0.118 3.882 21 O -0.292 6.292 22 N -0.218 5.218 23 C 0.020 3.980 24 C -0.110 4.110 25 C -0.046 4.046 26 H 0.079 0.921 27 H 0.073 0.927 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.027 0.973 32 H 0.047 0.953 33 H 0.070 0.930 34 H 0.043 0.957 35 H 0.114 0.886 36 H 0.113 0.887 37 H 0.098 0.902 38 H 0.159 0.841 39 H 0.155 0.845 40 H 0.254 0.746 41 H 0.105 0.895 42 H 0.118 0.882 43 H 0.044 0.956 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -9.970 0.312 18.675 21.172 hybrid contribution 0.035 -0.574 0.684 0.894 sum -9.935 -0.263 19.359 21.761 Atomic orbital electron populations 1.22489 0.98589 1.01632 1.01487 1.21820 0.91349 0.98281 0.90478 0.90395 1.21619 0.99273 0.98949 0.93606 1.19481 0.91096 0.96450 0.97384 1.21249 0.92436 1.30513 1.11270 0.91481 1.25022 0.98479 0.94988 0.95111 1.69926 1.14144 1.41445 1.29413 0.86755 0.80505 0.80912 0.80953 1.20410 1.21878 1.18866 1.59067 1.64191 1.01953 1.02490 1.21772 0.94927 0.88211 1.00440 1.20963 1.01188 1.00648 0.88748 1.20822 0.99944 0.94223 0.98555 1.21495 0.94438 0.99078 0.93465 1.22083 1.04235 0.97373 0.97545 1.19165 0.93477 0.88449 0.87086 1.84785 1.42132 1.89429 1.12835 1.67190 1.10784 1.33841 1.10002 1.20994 0.94121 0.94359 0.88573 1.20924 0.98952 0.95202 0.95895 1.21505 0.96826 0.97159 0.89151 0.92139 0.92713 0.93608 0.92578 0.92696 0.97302 0.95320 0.92974 0.95688 0.88615 0.88711 0.90153 0.84140 0.84490 0.74627 0.89533 0.88228 0.95564 0.90101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.39 8.73 37.16 0.32 -2.07 16 2 C 0.09 1.34 2.31 -67.71 -0.16 1.18 16 3 H 0.08 1.19 7.74 -51.93 -0.40 0.78 16 4 C -0.10 -1.81 4.44 -26.73 -0.12 -1.93 16 5 C -0.01 -0.15 3.97 -27.88 -0.11 -0.27 16 6 C -0.52 -14.52 9.66 -34.44 -0.33 -14.85 16 7 H 0.07 2.03 7.99 -52.48 -0.42 1.61 16 8 C 0.06 1.87 5.47 -17.82 -0.10 1.77 16 9 N -0.91 -28.13 13.96 55.43 0.77 -27.35 16 10 Si 0.88 21.88 27.47 -169.99 -4.67 17.21 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 13 H -0.26 -6.32 6.54 56.52 0.37 -5.96 16 14 N -0.55 -8.07 3.31 -228.89 -0.76 -8.82 16 15 C 0.07 1.02 4.21 -4.40 -0.02 1.00 16 16 C -0.08 -0.97 5.54 -27.31 -0.15 -1.12 16 17 C -0.13 -1.64 5.00 -104.51 -0.52 -2.16 16 18 C -0.06 -0.62 9.81 -39.30 -0.39 -1.00 16 19 C -0.19 -1.98 10.05 -39.22 -0.39 -2.37 16 20 C 0.30 3.63 7.73 -17.10 -0.13 3.49 16 21 O -0.49 -5.03 13.56 -18.73 -0.25 -5.28 16 22 N -0.50 -6.97 10.32 -9.43 -0.10 -7.06 16 23 C 0.16 2.08 5.92 -82.42 -0.49 1.59 16 24 C -0.07 -0.90 5.62 -27.47 -0.15 -1.05 16 25 C 0.08 1.07 4.79 -4.66 -0.02 1.04 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.05 0.71 6.58 -51.93 -0.34 0.37 16 28 H 0.04 0.56 7.38 -51.93 -0.38 0.18 16 29 H 0.06 1.05 5.99 -51.93 -0.31 0.74 16 30 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.01 0.21 7.20 -51.93 -0.37 -0.17 16 32 H 0.03 0.66 6.96 -51.93 -0.36 0.30 16 33 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 34 H 0.02 0.34 6.93 -51.93 -0.36 -0.02 16 35 H 0.10 1.44 5.53 -51.93 -0.29 1.15 16 36 H 0.09 1.31 7.22 -51.93 -0.38 0.93 16 37 H 0.08 0.88 7.96 -51.93 -0.41 0.47 16 38 H 0.14 1.12 8.02 -52.49 -0.42 0.70 16 39 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 40 H 0.40 2.06 9.06 45.56 0.41 2.47 16 41 H 0.09 1.01 8.12 -51.93 -0.42 0.59 16 42 H 0.10 1.29 7.22 -51.93 -0.37 0.91 16 43 H 0.03 0.36 7.32 -51.93 -0.38 -0.02 16 44 H 0.08 0.99 7.67 -51.93 -0.40 0.59 16 LS Contribution 340.18 15.07 5.13 5.13 Total: -1.00 -33.00 340.18 -8.68 -41.69 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -6.05 Total: 1.24 kcal Atomic # 6 Polarization: -13.97 SS G_CDS: -2.76 Total: -16.73 kcal Atomic # 7 Polarization: -43.16 SS G_CDS: -0.08 Total: -43.24 kcal Atomic # 8 Polarization: -5.03 SS G_CDS: -0.25 Total: -5.28 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.67 Total: 17.21 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.00 -8.68 -41.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172499719.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.645 kcal (2) G-P(sol) polarization free energy of solvation -33.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.01 seconds