Wall clock time and date at job start Tue Mar 31 2020 07:45:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.46971 * 2 1 4 4 C 1.53001 * 109.47056 * 239.99576 * 2 1 3 5 5 C 1.53001 * 109.46630 * 177.76498 * 4 2 1 6 6 C 1.50702 * 109.46511 * 175.34695 * 5 4 2 7 7 H 1.08005 * 120.00250 * 359.97438 * 6 5 4 8 8 C 1.37878 * 119.99792 * 180.02562 * 6 5 4 9 9 N 1.31513 * 120.00358 * 179.97438 * 8 6 5 10 10 Si 1.86802 * 120.00199 * 0.02562 * 8 6 5 11 11 H 1.48501 * 109.47148 * 89.99754 * 10 8 6 12 12 H 1.48493 * 109.47356 * 210.00200 * 10 8 6 13 13 H 1.48504 * 109.46607 * 330.00259 * 10 8 6 14 14 N 1.46904 * 109.46883 * 119.99915 * 2 1 3 15 15 C 1.45384 * 111.00119 * 58.83368 * 14 2 1 16 16 C 1.53462 * 110.74760 * 161.94350 * 15 14 2 17 17 C 1.51380 * 108.15605 * 84.73817 * 16 15 14 18 18 C 1.38700 * 119.96622 * 110.40310 * 17 16 15 19 19 C 1.38526 * 118.03875 * 179.63658 * 18 17 16 20 20 C 1.38921 * 119.05345 * 0.02562 * 19 18 17 21 21 O 1.35675 * 119.58010 * 180.02562 * 20 19 18 22 22 N 1.32298 * 120.83927 * 0.04203 * 20 19 18 23 23 C 1.32163 * 121.33257 * 0.02562 * 22 20 19 24 24 C 1.51570 * 119.56048 * 179.79075 * 23 22 20 25 25 C 1.45377 * 110.99558 * 287.37923 * 14 2 1 26 26 H 1.08998 * 109.47069 * 64.12274 * 1 2 3 27 27 H 1.09004 * 109.47379 * 184.11795 * 1 2 3 28 28 H 1.08997 * 109.47198 * 304.11698 * 1 2 3 29 29 H 1.08997 * 109.47043 * 297.76785 * 4 2 1 30 30 H 1.08999 * 109.46746 * 57.76636 * 4 2 1 31 31 H 1.08994 * 109.47245 * 295.34642 * 5 4 2 32 32 H 1.09004 * 109.47020 * 55.35380 * 5 4 2 33 33 H 0.96992 * 120.00375 * 180.02562 * 9 8 6 34 34 H 1.09000 * 109.22368 * 282.31399 * 15 14 2 35 35 H 1.09004 * 109.21569 * 41.64698 * 15 14 2 36 36 H 1.09001 * 109.75511 * 325.08744 * 16 15 14 37 37 H 1.08997 * 109.77829 * 204.40386 * 16 15 14 38 38 H 1.08001 * 120.97945 * 359.61502 * 18 17 16 39 39 H 1.08002 * 120.47331 * 180.02562 * 19 18 17 40 40 H 0.96699 * 114.00153 * 90.00842 * 21 20 19 41 41 H 1.09002 * 109.69079 * 8.99220 * 24 23 22 42 42 H 1.08997 * 109.69736 * 129.53978 * 24 23 22 43 43 H 1.09003 * 109.18926 * 77.88158 * 25 14 2 44 44 H 1.08999 * 109.19058 * 318.61956 * 25 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5690 -0.6728 -1.2776 6 6 4.0755 -1.4799 -2.4451 7 1 3.3768 -1.9780 -3.1010 8 6 5.4310 -1.5833 -2.6753 9 7 5.8732 -2.2880 -3.6939 10 14 6.6396 -0.7235 -1.5397 11 1 7.0104 -1.6365 -0.4288 12 1 7.8580 -0.3524 -2.3031 13 1 6.0109 0.5020 -0.9844 14 7 2.0197 -0.6925 1.1995 15 6 1.5311 -2.0610 1.2470 16 6 2.3704 -2.9045 2.2160 17 6 1.8202 -2.7061 3.6123 18 6 1.1604 -3.7455 4.2512 19 6 0.6798 -3.5226 5.5311 20 6 0.8754 -2.2788 6.1181 21 8 0.4096 -2.0491 7.3715 22 7 1.5098 -1.3154 5.4704 23 6 1.9771 -1.5011 4.2481 24 6 2.6936 -0.3679 3.5413 25 6 1.8110 0.1162 2.3894 26 1 -0.3633 0.4485 -0.9246 27 1 -0.3634 -1.0250 0.0738 28 1 -0.3633 0.5764 0.8508 29 1 1.7097 -1.7599 -1.2293 30 1 1.6443 -0.2312 -2.1387 31 1 3.8978 0.3613 -1.3807 32 1 3.9630 -1.0886 -0.3502 33 1 6.8267 -2.3610 -3.8556 34 1 0.4925 -2.0600 1.5781 35 1 1.5885 -2.4972 0.2497 36 1 3.4103 -2.5800 2.1813 37 1 2.3041 -3.9572 1.9412 38 1 1.0251 -4.7003 3.7649 39 1 0.1605 -4.3047 6.0651 40 1 1.0421 -2.2618 8.0714 41 1 2.8667 0.4501 4.2406 42 1 3.6464 -0.7236 3.1491 43 1 0.7649 0.0503 2.6885 44 1 2.0536 1.1546 2.1640 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172499719.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:45:37 Heat of formation + Delta-G solvation = -33.090217 kcal Electronic energy + Delta-G solvation = -23741.415507 eV Core-core repulsion = 20464.543309 eV Total energy + Delta-G solvation = -3276.872198 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 2.74 seconds Orbital eigenvalues (eV) -41.88318 -39.99539 -38.20868 -35.76640 -34.66383 -34.51417 -32.55024 -31.73195 -30.68470 -27.59361 -27.14235 -25.71237 -24.26247 -23.13537 -22.34159 -21.95638 -20.29019 -19.57056 -18.75288 -17.97924 -17.04111 -16.96252 -16.35246 -16.25164 -16.08758 -15.62607 -15.05083 -14.89976 -14.50732 -14.34260 -14.31250 -13.90984 -13.86814 -13.44149 -13.30263 -13.22624 -12.90594 -12.76640 -12.69787 -12.65837 -12.35224 -12.03911 -11.82623 -11.70103 -11.65990 -11.36341 -11.18640 -10.97846 -10.74538 -10.65501 -10.40828 -9.62158 -8.93680 -8.20724 -6.22023 0.00513 0.22351 1.42098 1.43331 1.56682 2.44272 2.49927 2.74468 2.94089 3.16540 3.52192 3.67932 3.93013 3.94533 4.03167 4.14901 4.26248 4.30424 4.36901 4.45382 4.47052 4.52574 4.58036 4.68469 4.73191 4.76332 4.85757 4.90597 4.96948 5.04971 5.09139 5.13763 5.17957 5.22679 5.29291 5.36220 5.43286 5.62300 5.69038 5.77910 5.82957 6.32710 6.41304 6.51577 6.62583 6.87230 6.94522 7.42395 8.96356 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.020816 B = 0.004142 C = 0.003920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.781757 B = 6758.086807 C = 7141.812112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.095 3.905 3 H 0.082 0.918 4 C -0.090 4.090 5 C 0.002 3.998 6 C -0.523 4.523 7 H 0.028 0.972 8 C 0.003 3.997 9 N -0.958 5.958 10 Si 0.950 3.050 11 H -0.267 1.267 12 H -0.291 1.291 13 H -0.247 1.247 14 N -0.564 5.564 15 C 0.077 3.923 16 C -0.072 4.072 17 C -0.144 4.144 18 C -0.055 4.055 19 C -0.186 4.186 20 C 0.287 3.713 21 O -0.494 6.494 22 N -0.527 5.527 23 C 0.142 3.858 24 C -0.067 4.067 25 C 0.088 3.912 26 H 0.065 0.935 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.051 0.949 30 H 0.050 0.950 31 H 0.007 0.993 32 H 0.032 0.968 33 H 0.263 0.737 34 H 0.029 0.971 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.095 0.905 38 H 0.168 0.832 39 H 0.165 0.835 40 H 0.417 0.583 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.022 0.978 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.755 -0.293 20.934 23.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.013 4.013 3 H 0.100 0.900 4 C -0.128 4.128 5 C -0.035 4.035 6 C -0.561 4.561 7 H 0.046 0.954 8 C -0.193 4.193 9 N -0.599 5.599 10 Si 0.774 3.226 11 H -0.192 1.192 12 H -0.218 1.218 13 H -0.170 1.170 14 N -0.289 5.289 15 C -0.050 4.050 16 C -0.110 4.110 17 C -0.146 4.146 18 C -0.081 4.081 19 C -0.206 4.206 20 C 0.108 3.892 21 O -0.304 6.304 22 N -0.247 5.247 23 C 0.005 3.995 24 C -0.106 4.106 25 C -0.040 4.040 26 H 0.084 0.916 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.025 0.975 32 H 0.051 0.949 33 H 0.071 0.929 34 H 0.047 0.953 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.113 0.887 38 H 0.185 0.815 39 H 0.183 0.817 40 H 0.278 0.722 41 H 0.110 0.890 42 H 0.111 0.889 43 H 0.040 0.960 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -10.587 0.581 21.040 23.560 hybrid contribution 0.156 -0.731 -0.043 0.748 sum -10.431 -0.149 20.997 23.445 Atomic orbital electron populations 1.22370 0.96701 1.01888 1.02306 1.21643 0.92767 0.97751 0.89091 0.90027 1.21482 0.96304 0.99374 0.95596 1.19365 0.94031 0.95031 0.95110 1.21636 0.92056 1.30365 1.12076 0.95382 1.25968 1.00714 0.95856 0.96772 1.70083 1.14705 1.43477 1.31671 0.85657 0.77699 0.80384 0.78857 1.19219 1.21776 1.17042 1.59053 1.64599 1.02417 1.02833 1.21713 0.95466 0.87980 0.99830 1.20886 1.00013 1.01171 0.88949 1.20817 1.00791 0.94627 0.98352 1.21834 0.93186 0.99601 0.93452 1.22355 1.03550 0.97309 0.97433 1.19470 0.93178 0.88864 0.87676 1.84734 1.43116 1.89600 1.12919 1.67154 1.11984 1.35072 1.10484 1.21061 0.94743 0.94902 0.88773 1.20862 0.98502 0.95435 0.95755 1.21481 0.96656 0.97312 0.88523 0.91582 0.92801 0.92434 0.93029 0.93175 0.97481 0.94929 0.92854 0.95256 0.90329 0.90225 0.88677 0.81485 0.81740 0.72222 0.88996 0.88868 0.95988 0.89227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.22 8.73 71.98 0.63 -3.59 16 2 C 0.10 2.75 2.31 44.92 0.10 2.86 16 3 H 0.08 2.32 7.74 -2.39 -0.02 2.30 16 4 C -0.09 -3.33 4.44 30.59 0.14 -3.19 16 5 C 0.00 0.09 3.97 29.85 0.12 0.21 16 6 C -0.52 -30.02 9.66 25.60 0.25 -29.77 16 7 H 0.03 1.77 7.99 -2.91 -0.02 1.75 16 8 C 0.00 0.15 5.47 84.65 0.46 0.61 16 9 N -0.96 -60.62 13.96 21.45 0.30 -60.33 16 10 Si 0.95 44.96 27.47 68.60 1.88 46.85 16 11 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 12 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 13 H -0.25 -10.91 6.54 99.48 0.65 -10.26 16 14 N -0.56 -15.73 3.31 -878.07 -2.90 -18.63 16 15 C 0.08 2.05 4.21 86.74 0.36 2.42 16 16 C -0.07 -1.71 5.54 30.22 0.17 -1.55 16 17 C -0.14 -3.28 5.00 -19.79 -0.10 -3.38 16 18 C -0.06 -1.01 9.81 22.45 0.22 -0.79 16 19 C -0.19 -3.30 10.05 22.50 0.23 -3.08 16 20 C 0.29 6.43 7.73 84.79 0.66 7.09 16 21 O -0.49 -9.22 13.56 -89.93 -1.22 -10.44 16 22 N -0.53 -14.00 10.32 -296.61 -3.06 -17.07 16 23 C 0.14 3.58 5.92 42.53 0.25 3.83 16 24 C -0.07 -1.61 5.62 30.12 0.17 -1.44 16 25 C 0.09 2.16 4.79 86.58 0.41 2.57 16 26 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.05 1.31 6.58 -2.38 -0.02 1.30 16 28 H 0.06 1.28 7.38 -2.39 -0.02 1.26 16 29 H 0.05 1.95 5.99 -2.39 -0.01 1.93 16 30 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.01 0.32 7.20 -2.39 -0.02 0.30 16 32 H 0.03 1.47 6.96 -2.39 -0.02 1.45 16 33 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 34 H 0.03 0.75 6.93 -2.39 -0.02 0.73 16 35 H 0.08 2.34 5.53 -2.38 -0.01 2.33 16 36 H 0.08 2.14 7.22 -2.39 -0.02 2.12 16 37 H 0.09 1.93 7.96 -2.39 -0.02 1.91 16 38 H 0.17 2.06 8.02 -2.91 -0.02 2.04 16 39 H 0.17 1.94 8.06 -2.91 -0.02 1.92 16 40 H 0.42 3.46 9.06 -74.06 -0.67 2.79 16 41 H 0.09 2.05 8.12 -2.39 -0.02 2.04 16 42 H 0.09 2.33 7.22 -2.39 -0.02 2.31 16 43 H 0.02 0.56 7.32 -2.39 -0.02 0.54 16 44 H 0.09 2.01 7.67 -2.39 -0.02 1.99 16 Total: -1.00 -71.59 340.18 -0.66 -72.24 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: 0.28 Total: 14.56 kcal Atomic # 6 Polarization: -31.25 SS G_CDS: 4.07 Total: -27.18 kcal Atomic # 7 Polarization: -90.36 SS G_CDS: -5.67 Total: -96.02 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: -1.22 Total: -10.44 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 1.88 Total: 46.85 kcal Total: -71.59 -0.66 -72.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172499719.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.153 kcal (2) G-P(sol) polarization free energy of solvation -71.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.74 seconds