Wall clock time and date at job start Tue Mar 31 2020 07:46:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08989 * 109.47500 * 2 1 4 4 C 1.53002 * 109.47026 * 120.00354 * 2 1 3 5 5 C 1.53004 * 109.47141 * 181.71132 * 4 2 1 6 6 C 1.50695 * 109.47330 * 173.25579 * 5 4 2 7 7 H 1.08000 * 119.99971 * 359.97438 * 6 5 4 8 8 C 1.37871 * 120.00293 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00281 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 120.00303 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47015 * 89.99755 * 10 8 6 12 12 H 1.48501 * 109.47121 * 209.99866 * 10 8 6 13 13 H 1.48498 * 109.46900 * 329.99762 * 10 8 6 14 14 N 1.46898 * 109.47034 * 239.99878 * 2 1 3 15 15 C 1.45386 * 111.00061 * 22.93744 * 14 2 1 16 16 C 1.53236 * 110.78934 * 58.90359 * 15 14 2 17 17 C 1.51387 * 108.28460 * 84.70098 * 16 15 14 18 18 C 1.38682 * 119.97782 * 110.35643 * 17 16 15 19 19 C 1.38537 * 118.03896 * 179.91084 * 18 17 16 20 20 C 1.38923 * 119.04400 * 359.97438 * 19 18 17 21 21 O 1.35676 * 119.57617 * 180.02562 * 20 19 18 22 22 N 1.32288 * 120.84502 * 0.06304 * 20 19 18 23 23 C 1.32173 * 121.33589 * 359.96868 * 22 20 19 24 24 C 1.51559 * 119.54668 * 179.77592 * 23 22 20 25 25 C 1.45376 * 111.00025 * 154.39519 * 14 2 1 26 26 H 1.08996 * 109.47511 * 171.27022 * 1 2 3 27 27 H 1.09003 * 109.47061 * 291.26640 * 1 2 3 28 28 H 1.08998 * 109.47124 * 51.26760 * 1 2 3 29 29 H 1.09004 * 109.46901 * 301.70843 * 4 2 1 30 30 H 1.08995 * 109.47578 * 61.71419 * 4 2 1 31 31 H 1.08995 * 109.47163 * 293.25623 * 5 4 2 32 32 H 1.09006 * 109.46863 * 53.25838 * 5 4 2 33 33 H 0.96996 * 120.00939 * 180.02562 * 9 8 6 34 34 H 1.09000 * 109.21687 * 298.57235 * 15 14 2 35 35 H 1.08998 * 109.21789 * 179.23876 * 15 14 2 36 36 H 1.09003 * 109.69984 * 325.01033 * 16 15 14 37 37 H 1.08991 * 109.70689 * 204.40003 * 16 15 14 38 38 H 1.08005 * 120.98210 * 359.88494 * 18 17 16 39 39 H 1.07998 * 120.47353 * 180.02562 * 19 18 17 40 40 H 0.96695 * 114.00048 * 90.00100 * 21 20 19 41 41 H 1.09003 * 109.69832 * 9.13619 * 24 23 22 42 42 H 1.09001 * 109.69542 * 129.71931 * 24 23 22 43 43 H 1.09001 * 109.19140 * 180.89784 * 25 14 2 44 44 H 1.08998 * 109.14974 * 61.61740 * 25 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5694 -0.6842 1.2710 6 6 4.0670 -1.2460 2.5777 7 1 3.3629 -1.5944 3.3188 8 6 5.4212 -1.3144 2.8277 9 7 6.2787 -0.8897 1.9255 10 14 6.0381 -2.0115 4.4472 11 1 6.2414 -3.4762 4.3102 12 1 7.3256 -1.3645 4.8063 13 1 5.0377 -1.7481 5.5126 14 7 2.0196 -0.6925 -1.1994 15 6 1.0148 -0.6884 -2.2501 16 6 0.6292 0.7457 -2.6283 17 6 1.6295 1.2542 -3.6444 18 6 1.2386 1.4588 -4.9592 19 6 2.1861 1.9268 -5.8550 20 6 3.4775 2.1708 -5.4046 21 8 4.4139 2.6298 -6.2725 22 7 3.8060 1.9606 -4.1405 23 6 2.9217 1.5139 -3.2656 24 6 3.3435 1.2825 -1.8284 25 6 3.3472 -0.2262 -1.5648 26 1 -0.3634 -1.0157 -0.1560 27 1 -0.3633 0.3727 0.9577 28 1 -0.3633 0.6430 -0.8016 29 1 1.6518 -0.2255 2.1390 30 1 1.7020 -1.7575 1.2340 31 1 3.9591 -1.2815 0.4468 32 1 3.9093 0.3462 1.1656 33 1 7.2314 -0.9381 2.1011 34 1 0.1283 -1.2179 -1.9009 35 1 1.4123 -1.1964 -3.1287 36 1 0.6526 1.3785 -1.7411 37 1 -0.3712 0.7553 -3.0608 38 1 0.2255 1.2586 -5.2756 39 1 1.9243 2.1003 -6.8883 40 1 4.4598 3.5941 -6.3278 41 1 4.3437 1.6857 -1.6695 42 1 2.6388 1.7712 -1.1555 43 1 3.6745 -0.7463 -2.4650 44 1 4.0397 -0.4463 -0.7523 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172499723.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:46:04 Heat of formation + Delta-G solvation = 12.529881 kcal Electronic energy + Delta-G solvation = -23968.357782 eV Core-core repulsion = 20693.463819 eV Total energy + Delta-G solvation = -3274.893962 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.09513 -39.20056 -37.12061 -34.11837 -33.59985 -32.56199 -31.28601 -30.78410 -28.83538 -26.67012 -25.03830 -24.30091 -23.36790 -22.36295 -21.21295 -20.59331 -18.92489 -18.48354 -17.08101 -16.28574 -16.19177 -15.77252 -15.45869 -14.96581 -14.49379 -14.39701 -14.07094 -13.67078 -13.28771 -12.79998 -12.73558 -12.54116 -12.24525 -12.05404 -11.90872 -11.77635 -11.63704 -11.46112 -11.28360 -10.96908 -10.91819 -10.64925 -10.44169 -10.37601 -10.27400 -9.81930 -9.57288 -9.38663 -9.13424 -8.84771 -8.78160 -8.23304 -7.49965 -5.92579 -3.93448 0.93080 1.13961 3.36635 3.38257 3.43080 3.45936 3.69558 4.28321 4.49203 4.52251 4.53310 4.81293 4.85664 5.13094 5.18768 5.28067 5.38695 5.43210 5.47632 5.48008 5.51617 5.57100 5.72302 5.76971 5.81061 5.91616 6.02902 6.04681 6.13335 6.20114 6.36333 6.43258 6.47492 6.50907 6.66860 6.76570 6.97076 7.27158 7.37031 7.64412 7.76266 7.78984 7.94202 7.99085 8.08099 8.53956 9.13167 9.69906 11.18323 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.020417 B = 0.004182 C = 0.003569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.095382 B = 6693.696728 C = 7844.516058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.078 3.922 3 H 0.050 0.950 4 C -0.099 4.099 5 C 0.018 3.982 6 C -0.519 4.519 7 H 0.052 0.948 8 C 0.058 3.942 9 N -0.895 5.895 10 Si 0.887 3.113 11 H -0.282 1.282 12 H -0.288 1.288 13 H -0.275 1.275 14 N -0.543 5.543 15 C 0.072 3.928 16 C -0.119 4.119 17 C -0.142 4.142 18 C -0.060 4.060 19 C -0.196 4.196 20 C 0.301 3.699 21 O -0.484 6.484 22 N -0.496 5.496 23 C 0.167 3.833 24 C -0.113 4.113 25 C 0.053 3.947 26 H 0.062 0.938 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.048 0.952 30 H 0.052 0.948 31 H 0.035 0.965 32 H 0.011 0.989 33 H 0.259 0.741 34 H 0.083 0.917 35 H 0.065 0.935 36 H 0.090 0.910 37 H 0.074 0.926 38 H 0.138 0.862 39 H 0.136 0.864 40 H 0.397 0.603 41 H 0.091 0.909 42 H 0.090 0.910 43 H 0.062 0.938 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.904 6.987 -14.283 20.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.029 4.029 3 H 0.067 0.933 4 C -0.138 4.138 5 C -0.018 4.018 6 C -0.557 4.557 7 H 0.070 0.930 8 C -0.143 4.143 9 N -0.535 5.535 10 Si 0.716 3.284 11 H -0.208 1.208 12 H -0.214 1.214 13 H -0.200 1.200 14 N -0.265 5.265 15 C -0.057 4.057 16 C -0.159 4.159 17 C -0.144 4.144 18 C -0.085 4.085 19 C -0.217 4.217 20 C 0.122 3.878 21 O -0.291 6.291 22 N -0.214 5.214 23 C 0.029 3.971 24 C -0.152 4.152 25 C -0.074 4.074 26 H 0.081 0.919 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.053 0.947 32 H 0.029 0.971 33 H 0.069 0.931 34 H 0.101 0.899 35 H 0.084 0.916 36 H 0.108 0.892 37 H 0.093 0.907 38 H 0.155 0.845 39 H 0.154 0.846 40 H 0.254 0.746 41 H 0.110 0.890 42 H 0.108 0.892 43 H 0.081 0.919 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -11.660 6.141 -14.111 19.307 hybrid contribution -0.422 0.887 0.132 0.991 sum -12.082 7.028 -13.978 19.768 Atomic orbital electron populations 1.22464 0.96181 1.02133 1.01745 1.21854 0.93245 0.96516 0.91301 0.93256 1.21670 0.99968 0.98995 0.93126 1.19333 0.88874 0.96727 0.96912 1.21317 0.91513 1.40739 1.02122 0.92971 1.24981 0.97113 0.95652 0.96569 1.69936 1.01890 1.47469 1.34184 0.86672 0.78186 0.79185 0.84396 1.20773 1.21365 1.20026 1.59583 1.02196 1.59273 1.05455 1.21899 0.96096 0.93282 0.94425 1.21876 0.96633 0.99771 0.97585 1.20691 0.96346 1.01648 0.95673 1.21397 0.99536 0.95511 0.92090 1.22049 0.92905 1.05257 1.01495 1.19218 0.86155 0.95879 0.86521 1.84789 1.58000 1.27344 1.58954 1.67260 1.37388 1.14431 1.02361 1.21136 0.88303 0.91794 0.95818 1.21679 1.03848 1.01017 0.88704 1.22457 0.91400 0.89855 1.03733 0.91924 0.92502 0.92192 0.93380 0.92872 0.94726 0.97092 0.93106 0.89874 0.91614 0.89165 0.90713 0.84454 0.84570 0.74626 0.89013 0.89176 0.91942 0.84985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.09 7.75 37.16 0.29 -1.81 16 2 C 0.08 1.24 1.70 -67.71 -0.12 1.12 16 3 H 0.05 0.81 5.15 -51.93 -0.27 0.54 16 4 C -0.10 -1.98 4.85 -26.73 -0.13 -2.11 16 5 C 0.02 0.44 3.41 -27.88 -0.09 0.35 16 6 C -0.52 -14.52 9.10 -34.45 -0.31 -14.84 16 7 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 8 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 9 N -0.90 -26.57 13.29 55.43 0.74 -25.84 16 10 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 11 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 13 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 14 N -0.54 -8.60 4.27 -228.93 -0.98 -9.58 16 15 C 0.07 0.90 5.08 -4.52 -0.02 0.88 16 16 C -0.12 -1.30 4.00 -27.42 -0.11 -1.41 16 17 C -0.14 -1.78 5.01 -104.52 -0.52 -2.30 16 18 C -0.06 -0.63 9.81 -39.31 -0.39 -1.02 16 19 C -0.20 -2.15 10.05 -39.22 -0.39 -2.55 16 20 C 0.30 4.09 7.73 -17.10 -0.13 3.96 16 21 O -0.48 -5.73 13.56 -18.73 -0.25 -5.98 16 22 N -0.50 -7.99 10.32 -9.44 -0.10 -8.08 16 23 C 0.17 2.52 5.92 -82.42 -0.49 2.03 16 24 C -0.11 -1.81 5.43 -27.38 -0.15 -1.96 16 25 C 0.05 0.93 5.14 -4.57 -0.02 0.91 16 26 H 0.06 0.77 6.98 -51.93 -0.36 0.40 16 27 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 28 H 0.06 0.63 4.64 -51.93 -0.24 0.39 16 29 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.03 0.91 5.68 -51.93 -0.30 0.62 16 32 H 0.01 0.28 8.01 -51.93 -0.42 -0.13 16 33 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 34 H 0.08 0.94 6.17 -51.93 -0.32 0.62 16 35 H 0.07 0.86 7.86 -51.93 -0.41 0.45 16 36 H 0.09 1.05 4.37 -51.93 -0.23 0.82 16 37 H 0.07 0.64 7.96 -51.93 -0.41 0.22 16 38 H 0.14 1.03 8.02 -52.48 -0.42 0.61 16 39 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 40 H 0.40 2.58 9.06 45.56 0.41 2.99 16 41 H 0.09 1.58 8.12 -51.93 -0.42 1.16 16 42 H 0.09 1.38 4.72 -51.93 -0.25 1.13 16 43 H 0.06 1.11 7.86 -51.93 -0.41 0.70 16 44 H 0.13 2.78 4.06 -51.93 -0.21 2.57 16 LS Contribution 329.93 15.07 4.97 4.97 Total: -1.00 -32.12 329.93 -8.81 -40.93 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -5.48 Total: 4.04 kcal Atomic # 6 Polarization: -14.50 SS G_CDS: -2.69 Total: -17.19 kcal Atomic # 7 Polarization: -43.16 SS G_CDS: -0.34 Total: -43.49 kcal Atomic # 8 Polarization: -5.73 SS G_CDS: -0.25 Total: -5.98 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.12 -8.81 -40.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172499723.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.462 kcal (2) G-P(sol) polarization free energy of solvation -32.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds