Wall clock time and date at job start Tue Mar 31 2020 07:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08989 * 109.47500 * 2 1 4 4 C 1.53002 * 109.47026 * 120.00354 * 2 1 3 5 5 C 1.53004 * 109.47141 * 181.71132 * 4 2 1 6 6 C 1.50695 * 109.47330 * 173.25579 * 5 4 2 7 7 H 1.08000 * 119.99971 * 359.97438 * 6 5 4 8 8 C 1.37871 * 120.00293 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00281 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 120.00303 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47015 * 89.99755 * 10 8 6 12 12 H 1.48501 * 109.47121 * 209.99866 * 10 8 6 13 13 H 1.48498 * 109.46900 * 329.99762 * 10 8 6 14 14 N 1.46898 * 109.47034 * 239.99878 * 2 1 3 15 15 C 1.45386 * 111.00061 * 22.93744 * 14 2 1 16 16 C 1.53236 * 110.78934 * 58.90359 * 15 14 2 17 17 C 1.51387 * 108.28460 * 84.70098 * 16 15 14 18 18 C 1.38682 * 119.97782 * 110.35643 * 17 16 15 19 19 C 1.38537 * 118.03896 * 179.91084 * 18 17 16 20 20 C 1.38923 * 119.04400 * 359.97438 * 19 18 17 21 21 O 1.35676 * 119.57617 * 180.02562 * 20 19 18 22 22 N 1.32288 * 120.84502 * 0.06304 * 20 19 18 23 23 C 1.32173 * 121.33589 * 359.96868 * 22 20 19 24 24 C 1.51559 * 119.54668 * 179.77592 * 23 22 20 25 25 C 1.45376 * 111.00025 * 154.39519 * 14 2 1 26 26 H 1.08996 * 109.47511 * 171.27022 * 1 2 3 27 27 H 1.09003 * 109.47061 * 291.26640 * 1 2 3 28 28 H 1.08998 * 109.47124 * 51.26760 * 1 2 3 29 29 H 1.09004 * 109.46901 * 301.70843 * 4 2 1 30 30 H 1.08995 * 109.47578 * 61.71419 * 4 2 1 31 31 H 1.08995 * 109.47163 * 293.25623 * 5 4 2 32 32 H 1.09006 * 109.46863 * 53.25838 * 5 4 2 33 33 H 0.96996 * 120.00939 * 180.02562 * 9 8 6 34 34 H 1.09000 * 109.21687 * 298.57235 * 15 14 2 35 35 H 1.08998 * 109.21789 * 179.23876 * 15 14 2 36 36 H 1.09003 * 109.69984 * 325.01033 * 16 15 14 37 37 H 1.08991 * 109.70689 * 204.40003 * 16 15 14 38 38 H 1.08005 * 120.98210 * 359.88494 * 18 17 16 39 39 H 1.07998 * 120.47353 * 180.02562 * 19 18 17 40 40 H 0.96695 * 114.00048 * 90.00100 * 21 20 19 41 41 H 1.09003 * 109.69832 * 9.13619 * 24 23 22 42 42 H 1.09001 * 109.69542 * 129.71931 * 24 23 22 43 43 H 1.09001 * 109.19140 * 180.89784 * 25 14 2 44 44 H 1.08998 * 109.14974 * 61.61740 * 25 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5694 -0.6842 1.2710 6 6 4.0670 -1.2460 2.5777 7 1 3.3629 -1.5944 3.3188 8 6 5.4212 -1.3144 2.8277 9 7 6.2787 -0.8897 1.9255 10 14 6.0381 -2.0115 4.4472 11 1 6.2414 -3.4762 4.3102 12 1 7.3256 -1.3645 4.8063 13 1 5.0377 -1.7481 5.5126 14 7 2.0196 -0.6925 -1.1994 15 6 1.0148 -0.6884 -2.2501 16 6 0.6292 0.7457 -2.6283 17 6 1.6295 1.2542 -3.6444 18 6 1.2386 1.4588 -4.9592 19 6 2.1861 1.9268 -5.8550 20 6 3.4775 2.1708 -5.4046 21 8 4.4139 2.6298 -6.2725 22 7 3.8060 1.9606 -4.1405 23 6 2.9217 1.5139 -3.2656 24 6 3.3435 1.2825 -1.8284 25 6 3.3472 -0.2262 -1.5648 26 1 -0.3634 -1.0157 -0.1560 27 1 -0.3633 0.3727 0.9577 28 1 -0.3633 0.6430 -0.8016 29 1 1.6518 -0.2255 2.1390 30 1 1.7020 -1.7575 1.2340 31 1 3.9591 -1.2815 0.4468 32 1 3.9093 0.3462 1.1656 33 1 7.2314 -0.9381 2.1011 34 1 0.1283 -1.2179 -1.9009 35 1 1.4123 -1.1964 -3.1287 36 1 0.6526 1.3785 -1.7411 37 1 -0.3712 0.7553 -3.0608 38 1 0.2255 1.2586 -5.2756 39 1 1.9243 2.1003 -6.8883 40 1 4.4598 3.5941 -6.3278 41 1 4.3437 1.6857 -1.6695 42 1 2.6388 1.7712 -1.1555 43 1 3.6745 -0.7463 -2.4650 44 1 4.0397 -0.4463 -0.7523 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172499723.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:45:54 Heat of formation + Delta-G solvation = -12.107955 kcal Electronic energy + Delta-G solvation = -23969.426158 eV Core-core repulsion = 20693.463819 eV Total energy + Delta-G solvation = -3275.962339 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 9.32 seconds Orbital eigenvalues (eV) -42.12624 -40.32065 -38.09988 -35.74038 -34.75886 -34.16664 -32.51632 -32.07203 -30.29918 -27.81452 -26.69588 -25.47856 -24.54643 -23.56013 -22.53208 -22.02763 -20.11385 -19.55029 -18.38456 -18.04768 -17.27035 -16.95309 -16.55532 -16.38549 -16.15233 -15.50981 -15.25711 -14.57637 -14.53753 -14.40613 -14.07954 -13.83624 -13.53786 -13.32002 -13.06791 -13.04086 -12.87085 -12.83033 -12.68053 -12.59918 -12.38146 -12.15145 -12.07512 -11.82201 -11.47272 -11.32929 -10.90341 -10.82092 -10.69689 -10.45636 -10.32751 -9.88209 -8.71958 -8.12454 -6.22159 -0.01050 0.23869 1.40600 1.41518 1.52192 2.44553 2.49358 2.72230 3.07213 3.19941 3.48536 3.65861 3.89426 3.94197 4.09943 4.16216 4.21865 4.32084 4.36691 4.40316 4.46569 4.57297 4.65293 4.69250 4.78557 4.82647 4.89452 5.00527 5.06835 5.10664 5.13255 5.17511 5.21620 5.28334 5.32488 5.48339 5.51022 5.62582 5.63207 5.93685 5.98858 6.36848 6.40257 6.59312 6.62358 6.96556 6.97067 7.45876 8.97727 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.020417 B = 0.004182 C = 0.003569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.095382 B = 6693.696728 C = 7844.516058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.084 3.916 3 H 0.042 0.958 4 C -0.091 4.091 5 C 0.028 3.972 6 C -0.542 4.542 7 H 0.054 0.946 8 C 0.002 3.998 9 N -0.931 5.931 10 Si 0.956 3.044 11 H -0.275 1.275 12 H -0.284 1.284 13 H -0.264 1.264 14 N -0.556 5.556 15 C 0.070 3.930 16 C -0.112 4.112 17 C -0.144 4.144 18 C -0.048 4.048 19 C -0.184 4.184 20 C 0.283 3.717 21 O -0.496 6.496 22 N -0.542 5.542 23 C 0.141 3.859 24 C -0.103 4.103 25 C 0.069 3.931 26 H 0.070 0.930 27 H 0.061 0.939 28 H 0.088 0.912 29 H 0.049 0.951 30 H 0.048 0.952 31 H 0.014 0.986 32 H -0.016 1.016 33 H 0.260 0.740 34 H 0.106 0.894 35 H 0.060 0.940 36 H 0.085 0.915 37 H 0.116 0.884 38 H 0.182 0.818 39 H 0.170 0.830 40 H 0.416 0.584 41 H 0.061 0.939 42 H 0.095 0.905 43 H 0.050 0.950 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.335 7.016 -15.436 23.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.023 4.023 3 H 0.059 0.941 4 C -0.129 4.129 5 C -0.009 4.009 6 C -0.580 4.580 7 H 0.072 0.928 8 C -0.196 4.196 9 N -0.571 5.571 10 Si 0.782 3.218 11 H -0.201 1.201 12 H -0.210 1.210 13 H -0.188 1.188 14 N -0.279 5.279 15 C -0.057 4.057 16 C -0.151 4.151 17 C -0.146 4.146 18 C -0.073 4.073 19 C -0.205 4.205 20 C 0.104 3.896 21 O -0.306 6.306 22 N -0.261 5.261 23 C 0.005 3.995 24 C -0.142 4.142 25 C -0.060 4.060 26 H 0.089 0.911 27 H 0.081 0.919 28 H 0.107 0.893 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.032 0.968 32 H 0.002 0.998 33 H 0.069 0.931 34 H 0.124 0.876 35 H 0.079 0.921 36 H 0.103 0.897 37 H 0.135 0.865 38 H 0.199 0.801 39 H 0.187 0.813 40 H 0.276 0.724 41 H 0.079 0.921 42 H 0.113 0.887 43 H 0.069 0.931 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -15.111 6.182 -15.266 22.352 hybrid contribution 0.706 0.899 0.402 1.211 sum -14.406 7.081 -14.864 21.877 Atomic orbital electron populations 1.22404 0.92521 1.03389 1.03296 1.21699 0.95960 0.95187 0.89449 0.94057 1.21537 0.96280 0.99386 0.95718 1.19179 0.92417 0.94309 0.94952 1.21827 0.92045 1.40727 1.03381 0.92764 1.25878 0.97425 0.95993 1.00268 1.70090 1.02114 1.48655 1.36285 0.85580 0.77700 0.78498 0.80061 1.20060 1.21006 1.18809 1.59459 1.02174 1.59414 1.06814 1.22015 0.95579 0.94957 0.93149 1.21855 0.98130 0.97834 0.97249 1.20869 0.95264 1.01210 0.97262 1.21885 1.01276 0.93468 0.90670 1.22405 0.91528 1.03422 1.03134 1.19572 0.87582 0.96520 0.85925 1.84740 1.58151 1.29344 1.58344 1.67094 1.38977 1.16036 1.04025 1.20918 0.89807 0.94131 0.94693 1.21429 1.02315 0.99667 0.90818 1.21989 0.91971 0.90930 1.01090 0.91122 0.91950 0.89346 0.93275 0.93327 0.96849 0.99774 0.93115 0.87574 0.92134 0.89715 0.86541 0.80061 0.81293 0.72361 0.92061 0.88730 0.93135 0.89642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.48 7.75 71.98 0.56 -2.92 16 2 C 0.08 2.66 1.70 44.92 0.08 2.73 16 3 H 0.04 1.38 5.15 -2.39 -0.01 1.37 16 4 C -0.09 -3.71 4.85 30.60 0.15 -3.56 16 5 C 0.03 1.47 3.41 29.85 0.10 1.57 16 6 C -0.54 -31.41 9.10 25.60 0.23 -31.18 16 7 H 0.05 3.04 7.74 -2.91 -0.02 3.02 16 8 C 0.00 0.11 5.46 84.65 0.46 0.57 16 9 N -0.93 -57.81 13.29 21.44 0.28 -57.53 16 10 Si 0.96 45.46 29.54 68.60 2.03 47.48 16 11 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 12 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 13 H -0.26 -11.95 7.11 99.48 0.71 -11.25 16 14 N -0.56 -17.73 4.27 -878.21 -3.75 -21.48 16 15 C 0.07 1.60 5.08 86.67 0.44 2.04 16 16 C -0.11 -2.02 4.00 30.15 0.12 -1.90 16 17 C -0.14 -3.27 5.01 -19.80 -0.10 -3.37 16 18 C -0.05 -0.80 9.81 22.45 0.22 -0.58 16 19 C -0.18 -3.44 10.05 22.51 0.23 -3.21 16 20 C 0.28 7.46 7.73 84.79 0.66 8.12 16 21 O -0.50 -11.45 13.56 -89.93 -1.22 -12.66 16 22 N -0.54 -17.99 10.32 -296.62 -3.06 -21.05 16 23 C 0.14 4.33 5.92 42.52 0.25 4.58 16 24 C -0.10 -3.55 5.43 30.17 0.16 -3.39 16 25 C 0.07 2.59 5.14 86.64 0.45 3.04 16 26 H 0.07 1.46 6.98 -2.39 -0.02 1.44 16 27 H 0.06 1.32 8.13 -2.39 -0.02 1.30 16 28 H 0.09 1.46 4.64 -2.39 -0.01 1.45 16 29 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.01 0.77 5.68 -2.39 -0.01 0.75 16 32 H -0.02 -0.92 8.01 -2.38 -0.02 -0.94 16 33 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 34 H 0.11 1.96 6.17 -2.39 -0.01 1.95 16 35 H 0.06 1.46 7.86 -2.39 -0.02 1.44 16 36 H 0.08 1.69 4.37 -2.39 -0.01 1.67 16 37 H 0.12 1.22 7.96 -2.39 -0.02 1.20 16 38 H 0.18 1.46 8.02 -2.91 -0.02 1.44 16 39 H 0.17 2.01 8.06 -2.91 -0.02 1.98 16 40 H 0.42 5.15 9.06 -74.06 -0.67 4.48 16 41 H 0.06 2.40 8.12 -2.39 -0.02 2.38 16 42 H 0.09 3.08 4.72 -2.39 -0.01 3.07 16 43 H 0.05 1.95 7.86 -2.39 -0.02 1.93 16 44 H 0.09 4.03 4.06 -2.39 -0.01 4.02 16 Total: -1.00 -74.74 329.93 -1.35 -76.09 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: 0.36 Total: 16.61 kcal Atomic # 6 Polarization: -31.46 SS G_CDS: 4.00 Total: -27.46 kcal Atomic # 7 Polarization: -93.54 SS G_CDS: -6.52 Total: -100.06 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: -1.22 Total: -12.66 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.48 kcal Total: -74.74 -1.35 -76.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172499723.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.982 kcal (2) G-P(sol) polarization free energy of solvation -74.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 9.32 seconds