Wall clock time and date at job start Tue Mar 31 2020 07:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.47556 * 2 1 4 4 C 1.52996 * 109.46839 * 120.00605 * 2 1 3 5 5 C 1.53004 * 109.46759 * 184.99728 * 4 2 1 6 6 C 1.50704 * 109.46949 * 180.02562 * 5 4 2 7 7 H 1.08000 * 120.00211 * 359.97438 * 6 5 4 8 8 C 1.37878 * 120.00001 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00156 * 179.97438 * 8 6 5 10 10 Si 1.86799 * 119.99887 * 359.97438 * 8 6 5 11 11 H 1.48498 * 109.47497 * 89.99582 * 10 8 6 12 12 H 1.48498 * 109.47013 * 209.99870 * 10 8 6 13 13 H 1.48502 * 109.47329 * 329.99835 * 10 8 6 14 14 N 1.46901 * 109.46565 * 240.00445 * 2 1 3 15 15 C 1.47015 * 111.00294 * 296.36407 * 14 2 1 16 16 C 1.53093 * 109.26056 * 182.39421 * 15 14 2 17 17 O 1.43015 * 109.25957 * 303.15203 * 16 15 14 18 18 C 1.43017 * 113.73701 * 58.67103 * 17 16 15 19 19 H 1.09004 * 109.50547 * 61.26158 * 18 17 16 20 20 C 1.50698 * 109.50654 * 181.39339 * 18 17 16 21 21 C 1.38229 * 119.61725 * 244.73112 * 20 18 17 22 22 C 1.38630 * 119.15813 * 179.75539 * 21 20 18 23 23 C 1.38678 * 118.42114 * 0.50715 * 22 21 20 24 24 C 1.38177 * 119.16238 * 359.73005 * 23 22 21 25 25 N 1.31852 * 119.61576 * 64.99794 * 20 18 17 26 26 C 1.47015 * 111.00452 * 60.00103 * 14 2 1 27 27 H 1.09006 * 109.47239 * 59.99185 * 1 2 3 28 28 H 1.08992 * 109.47786 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46791 * 299.99644 * 1 2 3 30 30 H 1.08991 * 109.47170 * 304.99419 * 4 2 1 31 31 H 1.09000 * 109.47032 * 64.99795 * 4 2 1 32 32 H 1.09000 * 109.47096 * 299.99590 * 5 4 2 33 33 H 1.08994 * 109.47634 * 59.99918 * 5 4 2 34 34 H 0.97002 * 120.00107 * 180.02562 * 9 8 6 35 35 H 1.09004 * 109.50485 * 62.46217 * 15 14 2 36 36 H 1.08999 * 109.50870 * 302.33706 * 15 14 2 37 37 H 1.09007 * 109.50521 * 183.21558 * 16 15 14 38 38 H 1.09004 * 109.50557 * 63.08975 * 16 15 14 39 39 H 1.07997 * 120.41959 * 359.97438 * 21 20 18 40 40 H 1.07993 * 120.78884 * 180.25805 * 22 21 20 41 41 H 1.07998 * 120.41701 * 179.71239 * 23 22 21 42 42 H 1.08004 * 119.61798 * 180.02562 * 24 23 22 43 43 H 1.09003 * 109.50470 * 57.66784 * 26 14 2 44 44 H 1.09000 * 109.53938 * 297.56710 * 26 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5648 -0.6135 1.3136 6 6 4.0672 -1.3246 2.5437 7 1 3.3688 -1.8050 3.2128 8 6 5.4185 -1.3618 2.8148 9 7 5.8569 -1.9819 3.8885 10 14 6.6267 -0.5314 1.6571 11 1 6.8325 0.8763 2.0828 12 1 7.9234 -1.2542 1.6933 13 1 6.0846 -0.5563 0.2748 14 7 2.0196 -0.6924 -1.1995 15 6 1.6205 -2.1074 -1.1909 16 6 2.2004 -2.8031 -2.4252 17 8 1.7568 -2.1226 -3.6023 18 6 2.1288 -0.7424 -3.6440 19 1 3.2155 -0.6578 -3.6333 20 6 1.5867 -0.1129 -4.9013 21 6 2.4621 0.3595 -5.8611 22 6 1.9530 0.9322 -7.0164 23 6 0.5762 1.0184 -7.1589 24 6 -0.2367 0.5290 -6.1545 25 7 0.2828 -0.0142 -5.0707 26 6 1.5482 -0.0257 -2.4221 27 1 -0.3634 0.5140 -0.8899 28 1 -0.3634 -1.0275 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6054 -0.2619 2.1368 31 1 1.7515 -1.7716 1.2054 32 1 3.9994 -1.0730 0.4258 33 1 3.8533 0.4367 1.3573 34 1 6.8076 -2.0078 4.0795 35 1 0.5330 -2.1789 -1.2101 36 1 2.0016 -2.5876 -0.2897 37 1 1.8600 -3.8383 -2.4531 38 1 3.2892 -2.7785 -2.3790 39 1 3.5291 0.2801 -5.7145 40 1 2.6128 1.3060 -7.7852 41 1 0.1449 1.4628 -8.0437 42 1 -1.3099 0.5920 -6.2580 43 1 1.8766 1.0136 -2.4196 44 1 0.4596 -0.0633 -2.4612 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172500106.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:48:58 Heat of formation + Delta-G solvation = -4.679538 kcal Electronic energy + Delta-G solvation = -23551.097458 eV Core-core repulsion = 20275.457239 eV Total energy + Delta-G solvation = -3275.640219 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 10.00 seconds Orbital eigenvalues (eV) -40.66306 -39.42252 -36.82455 -33.39918 -33.07454 -32.50045 -31.62789 -30.07411 -29.40936 -26.45991 -25.49063 -24.21095 -23.76266 -22.66373 -21.19819 -20.32659 -19.01794 -17.35088 -16.76432 -16.61862 -16.19544 -15.98639 -15.57690 -14.84702 -14.62963 -14.52052 -14.17351 -13.90992 -13.85076 -13.48979 -13.35581 -12.74286 -12.62196 -12.44017 -12.12857 -11.89372 -11.72135 -11.56204 -11.38879 -11.04654 -10.85507 -10.46133 -10.41176 -10.12571 -9.78542 -9.68529 -9.66026 -9.57036 -9.43361 -9.22306 -9.01202 -8.45277 -7.94841 -5.96538 -3.93177 0.79947 1.03984 3.37443 3.38386 3.44506 3.52258 3.78966 4.10088 4.17659 4.53921 4.57834 4.65013 4.79577 4.83598 5.06973 5.13123 5.17871 5.26395 5.33169 5.39232 5.41957 5.45397 5.49618 5.59105 5.66397 5.68903 5.84531 5.89993 5.93326 6.03703 6.09613 6.15318 6.20728 6.32989 6.42586 6.51872 6.70132 7.03398 7.16668 7.33435 7.34951 7.49030 7.66977 7.79968 7.91188 8.62941 9.09275 9.67479 11.17195 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.021443 B = 0.003894 C = 0.003628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.473652 B = 7188.456671 C = 7715.504522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.080 3.920 3 H 0.079 0.921 4 C -0.097 4.097 5 C -0.007 4.007 6 C -0.518 4.518 7 H 0.068 0.932 8 C 0.064 3.936 9 N -0.909 5.909 10 Si 0.878 3.122 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.261 1.261 14 N -0.522 5.522 15 C 0.011 3.989 16 C 0.064 3.936 17 O -0.375 6.375 18 C 0.146 3.854 19 H 0.081 0.919 20 C 0.139 3.861 21 C -0.156 4.156 22 C -0.077 4.077 23 C -0.174 4.174 24 C 0.097 3.903 25 N -0.461 5.461 26 C 0.030 3.970 27 H 0.050 0.950 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.029 0.971 33 H 0.006 0.994 34 H 0.261 0.739 35 H 0.042 0.958 36 H 0.102 0.898 37 H 0.098 0.902 38 H 0.062 0.938 39 H 0.138 0.862 40 H 0.136 0.864 41 H 0.134 0.866 42 H 0.156 0.844 43 H 0.077 0.923 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.576 5.438 -22.162 25.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.028 4.028 3 H 0.097 0.903 4 C -0.135 4.135 5 C -0.044 4.044 6 C -0.556 4.556 7 H 0.086 0.914 8 C -0.136 4.136 9 N -0.548 5.548 10 Si 0.706 3.294 11 H -0.206 1.206 12 H -0.217 1.217 13 H -0.185 1.185 14 N -0.246 5.246 15 C -0.117 4.117 16 C -0.012 4.012 17 O -0.294 6.294 18 C 0.087 3.913 19 H 0.098 0.902 20 C 0.001 3.999 21 C -0.176 4.176 22 C -0.103 4.103 23 C -0.194 4.194 24 C -0.060 4.060 25 N -0.170 5.170 26 C -0.099 4.099 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.047 0.953 33 H 0.024 0.976 34 H 0.071 0.929 35 H 0.060 0.940 36 H 0.120 0.880 37 H 0.116 0.884 38 H 0.080 0.920 39 H 0.155 0.845 40 H 0.153 0.847 41 H 0.152 0.848 42 H 0.173 0.827 43 H 0.095 0.905 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.550 4.995 -21.543 24.502 hybrid contribution 0.540 0.891 -0.946 1.408 sum -10.010 5.886 -22.489 25.310 Atomic orbital electron populations 1.22479 0.98366 1.01914 1.01607 1.21906 0.91675 0.98602 0.90625 0.90315 1.21614 0.99204 0.99072 0.93623 1.19486 0.91214 0.96190 0.97504 1.21242 0.92808 1.34054 1.07511 0.91389 1.25023 0.98458 0.95053 0.95047 1.69928 1.14465 1.43970 1.26453 0.86783 0.80410 0.79537 0.82664 1.20569 1.21699 1.18513 1.62396 1.59002 1.01865 1.01327 1.22883 0.98696 0.89951 1.00141 1.22733 0.99369 0.95623 0.83523 1.88002 1.78913 1.20802 1.41640 1.20840 0.97838 0.82430 0.90145 0.90165 1.20893 0.89180 0.95089 0.94786 1.21990 1.01445 0.99879 0.94280 1.21575 0.95550 0.96161 0.96992 1.22179 0.94560 1.01780 1.00892 1.22807 1.00565 0.93624 0.89018 1.67479 1.13917 1.12986 1.22657 1.22649 0.99325 0.98292 0.89637 0.93080 0.92569 0.92114 0.92476 0.92520 0.95302 0.97598 0.92932 0.93995 0.88022 0.88401 0.91968 0.84458 0.84651 0.84790 0.82718 0.90472 0.92490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.61 8.49 37.16 0.32 -2.29 16 2 C 0.08 1.31 2.43 -67.71 -0.16 1.15 16 3 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 4 C -0.10 -1.91 4.32 -26.73 -0.12 -2.03 16 5 C -0.01 -0.16 3.93 -27.88 -0.11 -0.27 16 6 C -0.52 -14.89 9.66 -34.44 -0.33 -15.22 16 7 H 0.07 2.10 7.99 -52.49 -0.42 1.68 16 8 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 9 N -0.91 -28.46 13.96 55.43 0.77 -27.69 16 10 Si 0.88 22.17 27.47 -169.99 -4.67 17.50 16 11 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 13 H -0.26 -6.36 6.54 56.52 0.37 -5.99 16 14 N -0.52 -8.41 4.21 -226.33 -0.95 -9.37 16 15 C 0.01 0.17 4.88 -3.71 -0.02 0.15 16 16 C 0.06 0.90 7.01 37.21 0.26 1.16 16 17 O -0.38 -5.66 10.45 -35.23 -0.37 -6.03 16 18 C 0.15 2.02 3.13 -27.84 -0.09 1.93 16 19 H 0.08 1.07 7.87 -51.93 -0.41 0.66 16 20 C 0.14 1.76 5.81 -82.59 -0.48 1.28 16 21 C -0.16 -1.57 9.71 -39.44 -0.38 -1.96 16 22 C -0.08 -0.62 10.18 -39.27 -0.40 -1.02 16 23 C -0.17 -1.36 10.11 -39.44 -0.40 -1.76 16 24 C 0.10 0.95 11.18 -17.55 -0.20 0.75 16 25 N -0.46 -5.96 9.82 -9.47 -0.09 -6.06 16 26 C 0.03 0.43 4.37 -3.71 -0.02 0.41 16 27 H 0.05 0.69 6.46 -51.93 -0.34 0.35 16 28 H 0.06 0.79 6.54 -51.93 -0.34 0.45 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.06 1.11 6.02 -51.93 -0.31 0.80 16 32 H 0.03 0.70 6.81 -51.93 -0.35 0.35 16 33 H 0.01 0.14 7.57 -51.93 -0.39 -0.25 16 34 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 35 H 0.04 0.63 6.52 -51.93 -0.34 0.29 16 36 H 0.10 1.68 6.00 -51.93 -0.31 1.37 16 37 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.14 1.14 7.95 -52.49 -0.42 0.72 16 40 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 41 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 42 H 0.16 1.09 8.06 -52.48 -0.42 0.67 16 43 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.06 0.86 6.16 -51.93 -0.32 0.54 16 LS Contribution 344.57 15.07 5.19 5.19 Total: -1.00 -33.21 344.57 -9.26 -42.47 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -6.92 Total: -0.12 kcal Atomic # 6 Polarization: -13.69 SS G_CDS: -2.22 Total: -15.91 kcal Atomic # 7 Polarization: -42.84 SS G_CDS: -0.27 Total: -43.11 kcal Atomic # 8 Polarization: -5.66 SS G_CDS: -0.37 Total: -6.03 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.67 Total: 17.50 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.21 -9.26 -42.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172500106.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.792 kcal (2) G-P(sol) polarization free energy of solvation -33.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 10.00 seconds