Wall clock time and date at job start Tue Mar 31 2020 07:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.47556 * 2 1 4 4 C 1.52996 * 109.46839 * 120.00605 * 2 1 3 5 5 C 1.53004 * 109.46759 * 184.99728 * 4 2 1 6 6 C 1.50704 * 109.46949 * 180.02562 * 5 4 2 7 7 H 1.08000 * 120.00211 * 359.97438 * 6 5 4 8 8 C 1.37878 * 120.00001 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00156 * 179.97438 * 8 6 5 10 10 Si 1.86799 * 119.99887 * 359.97438 * 8 6 5 11 11 H 1.48498 * 109.47497 * 89.99582 * 10 8 6 12 12 H 1.48498 * 109.47013 * 209.99870 * 10 8 6 13 13 H 1.48502 * 109.47329 * 329.99835 * 10 8 6 14 14 N 1.46901 * 109.46565 * 240.00445 * 2 1 3 15 15 C 1.47015 * 111.00294 * 296.36407 * 14 2 1 16 16 C 1.53093 * 109.26056 * 182.39421 * 15 14 2 17 17 O 1.43015 * 109.25957 * 303.15203 * 16 15 14 18 18 C 1.43017 * 113.73701 * 58.67103 * 17 16 15 19 19 H 1.09004 * 109.50547 * 61.26158 * 18 17 16 20 20 C 1.50698 * 109.50654 * 181.39339 * 18 17 16 21 21 C 1.38229 * 119.61725 * 244.73112 * 20 18 17 22 22 C 1.38630 * 119.15813 * 179.75539 * 21 20 18 23 23 C 1.38678 * 118.42114 * 0.50715 * 22 21 20 24 24 C 1.38177 * 119.16238 * 359.73005 * 23 22 21 25 25 N 1.31852 * 119.61576 * 64.99794 * 20 18 17 26 26 C 1.47015 * 111.00452 * 60.00103 * 14 2 1 27 27 H 1.09006 * 109.47239 * 59.99185 * 1 2 3 28 28 H 1.08992 * 109.47786 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46791 * 299.99644 * 1 2 3 30 30 H 1.08991 * 109.47170 * 304.99419 * 4 2 1 31 31 H 1.09000 * 109.47032 * 64.99795 * 4 2 1 32 32 H 1.09000 * 109.47096 * 299.99590 * 5 4 2 33 33 H 1.08994 * 109.47634 * 59.99918 * 5 4 2 34 34 H 0.97002 * 120.00107 * 180.02562 * 9 8 6 35 35 H 1.09004 * 109.50485 * 62.46217 * 15 14 2 36 36 H 1.08999 * 109.50870 * 302.33706 * 15 14 2 37 37 H 1.09007 * 109.50521 * 183.21558 * 16 15 14 38 38 H 1.09004 * 109.50557 * 63.08975 * 16 15 14 39 39 H 1.07997 * 120.41959 * 359.97438 * 21 20 18 40 40 H 1.07993 * 120.78884 * 180.25805 * 22 21 20 41 41 H 1.07998 * 120.41701 * 179.71239 * 23 22 21 42 42 H 1.08004 * 119.61798 * 180.02562 * 24 23 22 43 43 H 1.09003 * 109.50470 * 57.66784 * 26 14 2 44 44 H 1.09000 * 109.53938 * 297.56710 * 26 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5648 -0.6135 1.3136 6 6 4.0672 -1.3246 2.5437 7 1 3.3688 -1.8050 3.2128 8 6 5.4185 -1.3618 2.8148 9 7 5.8569 -1.9819 3.8885 10 14 6.6267 -0.5314 1.6571 11 1 6.8325 0.8763 2.0828 12 1 7.9234 -1.2542 1.6933 13 1 6.0846 -0.5563 0.2748 14 7 2.0196 -0.6924 -1.1995 15 6 1.6205 -2.1074 -1.1909 16 6 2.2004 -2.8031 -2.4252 17 8 1.7568 -2.1226 -3.6023 18 6 2.1288 -0.7424 -3.6440 19 1 3.2155 -0.6578 -3.6333 20 6 1.5867 -0.1129 -4.9013 21 6 2.4621 0.3595 -5.8611 22 6 1.9530 0.9322 -7.0164 23 6 0.5762 1.0184 -7.1589 24 6 -0.2367 0.5290 -6.1545 25 7 0.2828 -0.0142 -5.0707 26 6 1.5482 -0.0257 -2.4221 27 1 -0.3634 0.5140 -0.8899 28 1 -0.3634 -1.0275 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6054 -0.2619 2.1368 31 1 1.7515 -1.7716 1.2054 32 1 3.9994 -1.0730 0.4258 33 1 3.8533 0.4367 1.3573 34 1 6.8076 -2.0078 4.0795 35 1 0.5330 -2.1789 -1.2101 36 1 2.0016 -2.5876 -0.2897 37 1 1.8600 -3.8383 -2.4531 38 1 3.2892 -2.7785 -2.3790 39 1 3.5291 0.2801 -5.7145 40 1 2.6128 1.3060 -7.7852 41 1 0.1449 1.4628 -8.0437 42 1 -1.3099 0.5920 -6.2580 43 1 1.8766 1.0136 -2.4196 44 1 0.4596 -0.0633 -2.4612 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172500106.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:48:49 Heat of formation + Delta-G solvation = -26.860959 kcal Electronic energy + Delta-G solvation = -23552.059316 eV Core-core repulsion = 20275.457239 eV Total energy + Delta-G solvation = -3276.602077 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 4.44 seconds Orbital eigenvalues (eV) -41.53696 -40.45401 -38.08208 -35.31534 -34.02629 -33.37426 -33.20952 -31.35491 -30.67735 -27.59736 -27.16589 -25.38146 -24.49341 -23.68506 -22.74373 -21.71970 -20.33993 -18.82200 -18.18060 -17.63744 -17.26834 -16.92377 -16.49767 -16.32510 -15.95736 -15.76627 -15.45930 -15.12504 -14.95322 -14.65110 -14.40612 -14.27109 -13.99965 -13.60493 -13.46498 -13.30219 -13.03012 -12.84320 -12.76585 -12.49265 -12.23987 -11.99226 -11.67780 -11.57476 -11.41065 -11.33914 -11.10155 -10.82757 -10.71710 -10.67299 -10.34473 -9.99168 -9.19558 -8.25507 -6.27827 0.08765 0.37946 1.37578 1.39761 1.54213 2.40322 2.54204 2.78777 3.08984 3.11118 3.37289 3.71904 3.92962 3.96137 3.98565 4.07563 4.15478 4.21179 4.22990 4.26192 4.33616 4.37039 4.45689 4.57165 4.65920 4.70198 4.75847 4.79670 4.85270 4.89988 4.92291 4.98143 5.06384 5.20496 5.23588 5.26398 5.34407 5.57686 5.68681 5.74308 5.77796 6.04252 6.11785 6.17105 6.34549 6.80741 7.06714 7.36811 8.91526 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.021443 B = 0.003894 C = 0.003628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.473652 B = 7188.456671 C = 7715.504522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.086 3.914 3 H 0.081 0.919 4 C -0.090 4.090 5 C 0.003 3.997 6 C -0.527 4.527 7 H 0.029 0.971 8 C 0.003 3.997 9 N -0.955 5.955 10 Si 0.949 3.051 11 H -0.269 1.269 12 H -0.286 1.286 13 H -0.245 1.245 14 N -0.536 5.536 15 C 0.015 3.985 16 C 0.066 3.934 17 O -0.387 6.387 18 C 0.145 3.855 19 H 0.081 0.919 20 C 0.110 3.890 21 C -0.163 4.163 22 C -0.076 4.076 23 C -0.163 4.163 24 C 0.081 3.919 25 N -0.496 5.496 26 C 0.039 3.961 27 H 0.060 0.940 28 H 0.053 0.947 29 H 0.069 0.931 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.027 0.973 33 H 0.008 0.992 34 H 0.264 0.736 35 H 0.044 0.956 36 H 0.084 0.916 37 H 0.116 0.884 38 H 0.057 0.943 39 H 0.150 0.850 40 H 0.168 0.832 41 H 0.169 0.831 42 H 0.175 0.825 43 H 0.081 0.919 44 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.714 7.101 -25.414 28.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.022 4.022 3 H 0.099 0.901 4 C -0.128 4.128 5 C -0.035 4.035 6 C -0.566 4.566 7 H 0.047 0.953 8 C -0.193 4.193 9 N -0.597 5.597 10 Si 0.773 3.227 11 H -0.195 1.195 12 H -0.212 1.212 13 H -0.169 1.169 14 N -0.260 5.260 15 C -0.113 4.113 16 C -0.010 4.010 17 O -0.306 6.306 18 C 0.087 3.913 19 H 0.099 0.901 20 C -0.027 4.027 21 C -0.183 4.183 22 C -0.102 4.102 23 C -0.183 4.183 24 C -0.076 4.076 25 N -0.206 5.206 26 C -0.089 4.089 27 H 0.079 0.921 28 H 0.072 0.928 29 H 0.088 0.912 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.046 0.954 33 H 0.026 0.974 34 H 0.073 0.927 35 H 0.062 0.938 36 H 0.103 0.897 37 H 0.134 0.866 38 H 0.075 0.925 39 H 0.168 0.832 40 H 0.186 0.814 41 H 0.186 0.814 42 H 0.192 0.808 43 H 0.100 0.900 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -10.706 6.662 -24.802 27.824 hybrid contribution 0.509 0.354 0.068 0.624 sum -10.197 7.016 -24.734 27.658 Atomic orbital electron populations 1.22355 0.96401 1.02078 1.02505 1.21739 0.93164 0.97998 0.89292 0.90132 1.21469 0.96380 0.99458 0.95469 1.19360 0.94000 0.95256 0.94853 1.21602 0.92516 1.33885 1.08554 0.95277 1.25990 1.00693 0.95820 0.96812 1.70080 1.15135 1.45809 1.28661 0.85660 0.77611 0.78581 0.80826 1.19476 1.21201 1.16854 1.62379 1.59549 1.02287 1.01834 1.22818 0.98785 0.89685 1.00014 1.22765 0.99011 0.96420 0.82837 1.87995 1.79094 1.21734 1.41755 1.20904 0.97923 0.81700 0.90788 0.90092 1.20804 0.89783 0.96943 0.95192 1.22203 1.01880 0.99725 0.94495 1.22007 0.96301 0.95049 0.96808 1.22576 0.94408 1.00100 1.01175 1.23267 1.01949 0.93563 0.88835 1.67381 1.14316 1.14430 1.24490 1.22582 0.98814 0.98421 0.89087 0.92105 0.92782 0.91235 0.92858 0.92937 0.95448 0.97385 0.92693 0.93776 0.89747 0.86576 0.92467 0.83243 0.81441 0.81364 0.80769 0.90039 0.93227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.71 8.49 71.98 0.61 -4.10 16 2 C 0.09 2.75 2.43 44.92 0.11 2.86 16 3 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 4 C -0.09 -3.55 4.32 30.59 0.13 -3.42 16 5 C 0.00 0.13 3.93 29.85 0.12 0.25 16 6 C -0.53 -31.07 9.66 25.60 0.25 -30.82 16 7 H 0.03 1.88 7.99 -2.91 -0.02 1.85 16 8 C 0.00 0.17 5.47 84.66 0.46 0.63 16 9 N -0.96 -61.28 13.96 21.45 0.30 -60.98 16 10 Si 0.95 45.67 27.47 68.60 1.88 47.56 16 11 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 12 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 13 H -0.25 -11.08 6.54 99.48 0.65 -10.43 16 14 N -0.54 -16.91 4.21 -869.98 -3.66 -20.57 16 15 C 0.01 0.45 4.88 86.31 0.42 0.87 16 16 C 0.07 1.83 7.01 72.01 0.50 2.33 16 17 O -0.39 -11.48 10.45 -148.98 -1.56 -13.03 16 18 C 0.15 3.91 3.13 29.88 0.09 4.00 16 19 H 0.08 2.10 7.87 -2.38 -0.02 2.08 16 20 C 0.11 2.67 5.81 42.55 0.25 2.92 16 21 C -0.16 -2.96 9.71 22.36 0.22 -2.74 16 22 C -0.08 -0.98 10.18 22.47 0.23 -0.75 16 23 C -0.16 -1.99 10.11 22.36 0.23 -1.77 16 24 C 0.08 1.41 11.18 84.67 0.95 2.36 16 25 N -0.50 -12.29 9.82 -183.88 -1.81 -14.10 16 26 C 0.04 1.10 4.37 86.31 0.38 1.47 16 27 H 0.06 1.54 6.46 -2.38 -0.02 1.52 16 28 H 0.05 1.48 6.54 -2.39 -0.02 1.46 16 29 H 0.07 1.74 8.14 -2.39 -0.02 1.73 16 30 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.05 2.10 6.02 -2.39 -0.01 2.08 16 32 H 0.03 1.32 6.81 -2.39 -0.02 1.30 16 33 H 0.01 0.37 7.57 -2.39 -0.02 0.35 16 34 H 0.26 15.82 8.31 -92.71 -0.77 15.05 16 35 H 0.04 1.31 6.52 -2.39 -0.02 1.29 16 36 H 0.08 2.84 6.00 -2.39 -0.01 2.82 16 37 H 0.12 2.70 8.14 -2.38 -0.02 2.68 16 38 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 39 H 0.15 2.18 7.95 -2.91 -0.02 2.16 16 40 H 0.17 1.01 8.06 -2.91 -0.02 0.99 16 41 H 0.17 0.84 8.06 -2.91 -0.02 0.82 16 42 H 0.18 2.08 8.06 -2.91 -0.02 2.05 16 43 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 44 H 0.05 1.46 6.16 -2.39 -0.01 1.45 16 Total: -1.00 -72.94 344.57 1.02 -71.92 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: 0.92 Total: 15.10 kcal Atomic # 6 Polarization: -30.84 SS G_CDS: 4.94 Total: -25.90 kcal Atomic # 7 Polarization: -90.47 SS G_CDS: -5.17 Total: -95.64 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: -1.56 Total: -13.03 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 1.88 Total: 47.56 kcal Total: -72.94 1.02 -71.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172500106.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.059 kcal (2) G-P(sol) polarization free energy of solvation -72.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.44 seconds