Wall clock time and date at job start Tue Mar 31 2020 07:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35680 * 116.99848 * 2 1 4 4 C 1.38874 * 119.72840 * 174.85222 * 3 2 1 5 5 C 1.38604 * 119.13211 * 179.97438 * 4 3 2 6 6 C 1.38240 * 118.58974 * 359.67527 * 5 4 3 7 7 C 1.38357 * 119.19924 * 0.69986 * 6 5 4 8 8 N 1.31878 * 120.90767 * 359.30587 * 7 6 5 9 9 C 1.50577 * 121.56340 * 180.15637 * 6 5 4 10 10 C 1.52948 * 109.90587 * 343.44448 * 9 6 5 11 11 N 1.47141 * 108.65422 * 50.23558 * 10 9 6 12 12 C 1.46904 * 110.99620 * 52.24905 * 11 10 9 13 13 H 1.09005 * 109.47290 * 332.75922 * 12 11 10 14 14 C 1.53003 * 109.47065 * 212.76003 * 12 11 10 15 15 C 1.52994 * 109.47162 * 92.75914 * 12 11 10 16 16 C 1.52996 * 109.47435 * 298.72800 * 15 12 11 17 17 C 1.50697 * 109.47636 * 186.30129 * 16 15 12 18 18 H 1.08003 * 119.99390 * 4.97464 * 17 16 15 19 19 C 1.37877 * 120.00241 * 184.96610 * 17 16 15 20 20 N 1.31513 * 119.99873 * 5.05809 * 19 17 16 21 21 Si 1.86804 * 119.99806 * 185.05195 * 19 17 16 22 22 H 1.48497 * 109.47380 * 5.00551 * 21 19 17 23 23 H 1.48502 * 109.46897 * 125.00422 * 21 19 17 24 24 H 1.48498 * 109.47004 * 245.00186 * 21 19 17 25 25 C 1.46727 * 110.34975 * 288.76113 * 11 10 9 26 26 H 1.08993 * 109.47140 * 184.94468 * 1 2 3 27 27 H 1.09003 * 109.46566 * 304.93901 * 1 2 3 28 28 H 1.08992 * 109.47432 * 64.93952 * 1 2 3 29 29 H 1.07996 * 120.43210 * 359.97146 * 4 3 2 30 30 H 1.07992 * 119.54261 * 179.58293 * 7 6 5 31 31 H 1.08994 * 109.53946 * 223.20562 * 9 6 5 32 32 H 1.09009 * 109.15417 * 103.43761 * 9 6 5 33 33 H 1.09004 * 109.60544 * 290.48639 * 10 9 6 34 34 H 1.09002 * 109.60955 * 169.98849 * 10 9 6 35 35 H 1.09002 * 109.47228 * 179.97438 * 14 12 11 36 36 H 1.08996 * 109.46776 * 300.00080 * 14 12 11 37 37 H 1.09001 * 109.46836 * 60.00104 * 14 12 11 38 38 H 1.08995 * 109.47056 * 58.73070 * 15 12 11 39 39 H 1.09005 * 109.47239 * 178.72785 * 15 12 11 40 40 H 1.08998 * 109.47158 * 306.30415 * 16 15 12 41 41 H 1.09004 * 109.46900 * 66.30012 * 16 15 12 42 42 H 0.97003 * 119.99635 * 180.02562 * 20 19 17 43 43 H 1.09001 * 109.32192 * 292.02050 * 25 11 10 44 44 H 1.08994 * 109.17546 * 172.47510 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4278 1.2773 0.1082 5 6 4.0442 2.5187 0.1064 6 6 3.2561 3.6484 -0.0105 7 6 1.8832 3.5067 -0.1067 8 7 1.3235 2.3126 -0.1019 9 6 3.8556 5.0297 -0.0235 10 6 5.2883 4.9806 0.5095 11 7 6.0182 3.9179 -0.1997 12 6 5.8954 4.0761 -1.6550 13 1 4.9637 4.5920 -1.8872 14 6 5.8946 2.6979 -2.3196 15 6 7.0762 4.8949 -2.1804 16 6 7.0588 6.2842 -1.5397 17 6 8.1262 7.1414 -2.1697 18 1 8.7001 6.7636 -3.0030 19 6 8.3699 8.4080 -1.6825 20 7 7.7418 8.8310 -0.6072 21 14 9.5922 9.5230 -2.5497 22 1 10.0685 8.8640 -3.7923 23 1 8.9326 10.8085 -2.8928 24 1 10.7473 9.7832 -1.6533 25 6 5.5406 2.5981 0.2279 26 1 -0.3633 -1.0238 0.0886 27 1 -0.3632 0.5886 0.8425 28 1 -0.3634 0.4353 -0.9308 29 1 4.0151 0.3750 0.1927 30 1 1.2618 4.3858 -0.1915 31 1 3.2584 5.6921 0.6031 32 1 3.8622 5.4071 -1.0461 33 1 5.2740 4.7642 1.5778 34 1 5.7768 5.9393 0.3346 35 1 5.8031 2.8152 -3.3994 36 1 6.8263 2.1821 -2.0874 37 1 5.0533 2.1146 -1.9452 38 1 8.0089 4.3903 -1.9285 39 1 6.9972 4.9931 -3.2631 40 1 6.0834 6.7445 -1.6968 41 1 7.2498 6.1935 -0.4704 42 1 7.9131 9.7222 -0.2647 43 1 5.8277 2.4295 1.2658 44 1 5.9946 1.8321 -0.4007 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172506512.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:46:10 Heat of formation + Delta-G solvation = 5.425944 kcal Electronic energy + Delta-G solvation = -23734.906822 eV Core-core repulsion = 20459.704810 eV Total energy + Delta-G solvation = -3275.202012 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -41.20973 -39.36079 -37.44893 -34.11481 -33.08347 -32.59542 -30.84416 -29.99777 -28.71897 -27.00888 -25.71057 -24.42990 -23.53943 -22.65294 -21.73436 -20.51997 -18.87175 -17.73817 -17.13614 -16.24928 -16.13988 -16.02757 -15.20685 -14.94001 -14.72267 -14.46309 -14.35373 -14.06809 -13.50110 -12.94935 -12.76381 -12.60359 -12.56043 -12.22618 -12.11485 -11.98367 -11.66960 -11.39239 -11.33822 -11.16318 -10.97921 -10.85291 -10.53186 -10.38255 -10.31895 -9.80474 -9.52472 -9.44064 -9.10950 -8.91801 -8.38516 -8.25659 -7.84783 -5.95510 -3.95063 1.07937 1.21844 2.97877 3.33540 3.41350 3.45586 3.67498 4.22778 4.25208 4.50522 4.70713 4.88116 4.93052 4.99927 5.08284 5.11934 5.28918 5.34673 5.40056 5.43084 5.44251 5.52191 5.60234 5.69952 5.72229 5.78360 5.80670 5.94604 6.05271 6.24631 6.29786 6.36271 6.44026 6.48078 6.61158 6.66358 6.93869 7.13724 7.24855 7.45387 7.52970 7.75103 7.78149 7.99118 8.07590 8.52333 9.12182 9.67917 11.15654 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.035954 B = 0.003437 C = 0.003307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.589251 B = 8144.180511 C = 8465.128125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.312 6.312 3 C 0.307 3.693 4 C -0.188 4.188 5 C -0.028 4.028 6 C -0.156 4.156 7 C 0.139 3.861 8 N -0.542 5.542 9 C -0.112 4.112 10 C 0.041 3.959 11 N -0.508 5.508 12 C 0.069 3.931 13 H 0.055 0.945 14 C -0.159 4.159 15 C -0.097 4.097 16 C 0.022 3.978 17 C -0.517 4.517 18 H 0.052 0.948 19 C 0.057 3.943 20 N -0.895 5.895 21 Si 0.886 3.114 22 H -0.274 1.274 23 H -0.286 1.286 24 H -0.285 1.285 25 C 0.077 3.923 26 H 0.093 0.907 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.139 0.861 30 H 0.158 0.842 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.069 0.931 34 H 0.117 0.883 35 H 0.056 0.944 36 H 0.061 0.939 37 H 0.050 0.950 38 H 0.053 0.947 39 H 0.046 0.954 40 H 0.003 0.997 41 H 0.037 0.963 42 H 0.258 0.742 43 H 0.091 0.909 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.321 -15.179 2.765 19.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.219 6.219 3 C 0.129 3.871 4 C -0.209 4.209 5 C -0.037 4.037 6 C -0.159 4.159 7 C -0.018 4.018 8 N -0.265 5.265 9 C -0.151 4.151 10 C -0.087 4.087 11 N -0.229 5.229 12 C -0.039 4.039 13 H 0.073 0.927 14 C -0.216 4.216 15 C -0.136 4.136 16 C -0.015 4.015 17 C -0.555 4.555 18 H 0.070 0.930 19 C -0.143 4.143 20 N -0.535 5.535 21 Si 0.715 3.285 22 H -0.199 1.199 23 H -0.212 1.212 24 H -0.211 1.211 25 C -0.052 4.052 26 H 0.111 0.889 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.157 0.843 30 H 0.175 0.825 31 H 0.099 0.901 32 H 0.105 0.895 33 H 0.087 0.913 34 H 0.135 0.865 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.065 0.935 40 H 0.021 0.979 41 H 0.055 0.945 42 H 0.068 0.932 43 H 0.109 0.891 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -12.604 -15.348 2.923 20.074 hybrid contribution 0.217 0.795 -0.602 1.021 sum -12.387 -14.553 2.321 19.251 Atomic orbital electron populations 1.22801 0.77580 1.02612 1.02334 1.86216 1.22622 1.24795 1.88297 1.19759 0.89379 0.84586 0.93367 1.20934 0.91969 0.98903 1.09063 1.20662 0.98787 0.91490 0.92799 1.20480 0.94348 0.96600 1.04444 1.22348 0.92213 0.93490 0.93702 1.67238 1.40871 0.98827 1.19598 1.21039 0.98680 0.91961 1.03404 1.22620 0.90332 0.98234 0.97518 1.62686 1.53402 1.00575 1.06208 1.22044 0.99997 0.95689 0.86146 0.92706 1.22230 1.01360 0.97430 1.00619 1.21641 0.95466 0.98057 0.98389 1.19205 0.95813 0.89275 0.97158 1.21357 1.19061 0.99318 1.15807 0.92961 1.24980 0.96246 0.98220 0.94887 1.69958 1.43227 1.18429 1.21881 0.86628 0.81277 0.80731 0.79887 1.19868 1.21179 1.21091 1.21471 0.86673 0.94619 1.02397 0.88892 0.92458 0.92492 0.84306 0.82528 0.90077 0.89466 0.91257 0.86495 0.92514 0.91989 0.93066 0.92827 0.93513 0.97854 0.94531 0.93230 0.89130 0.88221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.38 10.40 101.05 1.05 1.43 16 2 O -0.31 -3.84 10.48 -18.74 -0.20 -4.03 16 3 C 0.31 4.12 7.48 -17.14 -0.13 3.99 16 4 C -0.19 -2.36 9.59 -39.21 -0.38 -2.73 16 5 C -0.03 -0.37 4.03 -104.66 -0.42 -0.79 16 6 C -0.16 -2.09 5.48 -104.64 -0.57 -2.67 16 7 C 0.14 1.78 10.84 -17.49 -0.19 1.59 16 8 N -0.54 -7.39 9.22 -13.28 -0.12 -7.52 16 9 C -0.11 -1.56 5.21 -27.97 -0.15 -1.70 16 10 C 0.04 0.65 5.55 -3.72 -0.02 0.62 16 11 N -0.51 -8.07 4.65 -228.27 -1.06 -9.13 16 12 C 0.07 1.14 2.03 -67.71 -0.14 1.00 16 13 H 0.06 0.95 5.02 -51.93 -0.26 0.69 16 14 C -0.16 -2.23 7.79 37.16 0.29 -1.94 16 15 C -0.10 -1.98 4.86 -26.74 -0.13 -2.11 16 16 C 0.02 0.55 3.53 -27.89 -0.10 0.45 16 17 C -0.52 -14.47 9.10 -34.44 -0.31 -14.78 16 18 H 0.05 1.45 7.75 -52.48 -0.41 1.04 16 19 C 0.06 1.62 5.45 -17.82 -0.10 1.53 16 20 N -0.90 -26.22 13.29 55.43 0.74 -25.49 16 21 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 22 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 25 C 0.08 1.00 5.12 -5.24 -0.03 0.97 16 26 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.52 8.05 -51.93 -0.42 0.11 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.14 1.48 8.06 -52.49 -0.42 1.06 16 30 H 0.16 1.65 8.06 -52.49 -0.42 1.23 16 31 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.09 1.31 6.20 -51.92 -0.32 0.99 16 33 H 0.07 1.02 8.05 -51.93 -0.42 0.60 16 34 H 0.12 2.26 5.09 -51.93 -0.26 2.00 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.83 7.57 -51.93 -0.39 0.44 16 37 H 0.05 0.68 5.35 -51.93 -0.28 0.40 16 38 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.00 0.08 8.06 -51.93 -0.42 -0.34 16 41 H 0.04 0.96 6.09 -51.93 -0.32 0.64 16 42 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 43 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.10 1.20 5.51 -51.93 -0.29 0.91 16 LS Contribution 339.09 15.07 5.11 5.11 Total: -1.00 -30.50 339.09 -8.59 -39.10 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -6.72 Total: 0.52 kcal Atomic # 6 Polarization: -13.81 SS G_CDS: -1.32 Total: -15.13 kcal Atomic # 7 Polarization: -41.68 SS G_CDS: -0.45 Total: -42.13 kcal Atomic # 8 Polarization: -3.84 SS G_CDS: -0.20 Total: -4.03 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.50 -8.59 -39.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172506512.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.522 kcal (2) G-P(sol) polarization free energy of solvation -30.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.01 seconds