Wall clock time and date at job start Tue Mar 31 2020 07:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35672 * 117.00055 * 2 1 4 4 C 1.38870 * 119.72877 * 179.97438 * 3 2 1 5 5 C 1.38608 * 119.13391 * 179.97438 * 4 3 2 6 6 C 1.38240 * 118.59103 * 359.86892 * 5 4 3 7 7 C 1.38360 * 119.20017 * 0.19555 * 6 5 4 8 8 N 1.31882 * 120.90920 * 359.87531 * 7 6 5 9 9 C 1.50568 * 121.57443 * 180.21966 * 6 5 4 10 10 C 1.52955 * 109.85448 * 343.13021 * 9 6 5 11 11 N 1.47143 * 108.65536 * 50.37725 * 10 9 6 12 12 C 1.46896 * 111.00066 * 52.23107 * 11 10 9 13 13 H 1.08995 * 109.47284 * 294.81350 * 12 11 10 14 14 C 1.52997 * 109.47220 * 54.81643 * 12 11 10 15 15 C 1.53000 * 109.47025 * 174.81626 * 12 11 10 16 16 C 1.53005 * 109.47265 * 303.36816 * 15 12 11 17 17 C 1.50702 * 109.47283 * 184.76467 * 16 15 12 18 18 H 1.07997 * 119.99530 * 0.02562 * 17 16 15 19 19 C 1.37875 * 119.99963 * 180.02562 * 17 16 15 20 20 N 1.31512 * 120.00051 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 119.99959 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47224 * 60.00034 * 21 19 17 23 23 H 1.48505 * 109.47231 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47114 * 300.00274 * 21 19 17 25 25 C 1.46724 * 110.33967 * 288.74378 * 11 10 9 26 26 H 1.09000 * 109.47413 * 300.00359 * 1 2 3 27 27 H 1.09000 * 109.46973 * 59.99724 * 1 2 3 28 28 H 1.08996 * 109.47315 * 180.02562 * 1 2 3 29 29 H 1.08002 * 120.43542 * 359.97438 * 4 3 2 30 30 H 1.07992 * 119.55252 * 179.84774 * 7 6 5 31 31 H 1.08995 * 109.41089 * 223.01007 * 9 6 5 32 32 H 1.09007 * 109.34675 * 103.20303 * 9 6 5 33 33 H 1.09002 * 109.59955 * 290.63192 * 10 9 6 34 34 H 1.08990 * 109.60886 * 170.13234 * 10 9 6 35 35 H 1.09004 * 109.47508 * 59.99713 * 14 12 11 36 36 H 1.08999 * 109.47673 * 180.02562 * 14 12 11 37 37 H 1.08998 * 109.47281 * 299.99874 * 14 12 11 38 38 H 1.08999 * 109.47378 * 63.37158 * 15 12 11 39 39 H 1.09004 * 109.46858 * 183.37543 * 15 12 11 40 40 H 1.08997 * 109.47110 * 304.77392 * 16 15 12 41 41 H 1.09006 * 109.46483 * 64.76659 * 16 15 12 42 42 H 0.97004 * 120.00154 * 179.97438 * 20 19 17 43 43 H 1.09002 * 109.32541 * 172.60728 * 25 11 10 44 44 H 1.08998 * 109.33241 * 292.07372 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 3.4321 1.2749 0.0005 5 6 4.0485 2.5164 0.0000 6 6 3.2555 3.6487 -0.0039 7 6 1.8790 3.5089 -0.0029 8 7 1.3195 2.3146 -0.0008 9 6 3.8541 5.0303 -0.0096 10 6 5.3241 4.9614 0.4072 11 7 5.9945 3.9305 -0.4008 12 6 5.7583 4.1488 -1.8341 13 1 4.6983 4.0187 -2.0516 14 6 6.1857 5.5688 -2.2109 15 6 6.5730 3.1389 -2.6449 16 6 8.0528 3.2648 -2.2772 17 6 8.8686 2.3538 -3.1580 18 1 8.3803 1.7462 -3.9056 19 6 10.2381 2.2960 -3.0095 20 7 10.8325 3.0355 -2.0988 21 14 11.2492 1.1674 -4.1017 22 1 11.0585 1.5528 -5.5231 23 1 12.6854 1.2885 -3.7439 24 1 10.8075 -0.2369 -3.9061 25 6 5.5499 2.5932 0.0077 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 4.0229 0.3708 0.0014 30 1 1.2541 4.3896 -0.0034 31 1 3.3088 5.6643 0.6895 32 1 3.7814 5.4512 -1.0125 33 1 5.3929 4.7004 1.4633 34 1 5.7988 5.9272 0.2349 35 1 7.2459 5.6989 -1.9934 36 1 6.0101 5.7310 -3.2744 37 1 5.6054 6.2882 -1.6334 38 1 6.2274 2.1298 -2.4208 39 1 6.4447 3.3391 -3.7087 40 1 8.3767 4.2955 -2.4215 41 1 8.1931 2.9825 -1.2337 42 1 11.7960 2.9946 -1.9940 43 1 5.9527 1.8525 -0.6831 44 1 5.9164 2.3824 1.0123 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172506513.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:46:23 Heat of formation + Delta-G solvation = -3.456092 kcal Electronic energy + Delta-G solvation = -23696.923136 eV Core-core repulsion = 20421.335970 eV Total energy + Delta-G solvation = -3275.587166 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -41.15181 -39.32423 -37.45640 -34.33104 -32.99224 -32.46807 -30.89967 -29.76252 -28.48332 -27.14291 -25.22400 -24.87523 -23.60859 -22.70401 -22.05189 -20.51634 -18.50307 -17.59847 -17.08690 -16.39844 -16.13241 -15.92612 -15.12636 -14.93596 -14.73155 -14.50592 -14.32300 -14.02364 -13.58757 -13.21955 -12.79030 -12.58790 -12.31933 -12.27065 -12.06289 -11.87299 -11.73511 -11.53018 -11.24251 -11.13548 -11.03240 -10.86940 -10.63907 -10.43293 -10.15581 -9.79793 -9.56571 -9.40186 -9.12805 -8.88878 -8.37932 -8.21445 -7.88566 -5.88674 -3.90009 1.09223 1.22378 3.00797 3.38241 3.42755 3.45288 3.67862 4.18048 4.24099 4.54067 4.66440 4.83890 4.88662 4.98213 5.09735 5.14335 5.17251 5.37683 5.39314 5.46373 5.49560 5.54313 5.64548 5.68051 5.73766 5.85789 5.88595 5.92992 5.99055 6.05645 6.23647 6.33415 6.41801 6.48025 6.60882 6.77549 6.80221 7.16073 7.25078 7.40214 7.53927 7.77773 7.86367 8.07653 8.21475 8.57331 9.18962 9.72692 11.21929 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.018757 B = 0.004057 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.442386 B = 6900.424061 C = 7919.251211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.310 6.310 3 C 0.310 3.690 4 C -0.184 4.184 5 C -0.025 4.025 6 C -0.164 4.164 7 C 0.137 3.863 8 N -0.544 5.544 9 C -0.109 4.109 10 C 0.049 3.951 11 N -0.503 5.503 12 C 0.079 3.921 13 H 0.030 0.970 14 C -0.147 4.147 15 C -0.108 4.108 16 C 0.033 3.967 17 C -0.523 4.523 18 H 0.049 0.951 19 C 0.058 3.942 20 N -0.893 5.893 21 Si 0.885 3.115 22 H -0.279 1.279 23 H -0.288 1.288 24 H -0.278 1.278 25 C 0.083 3.917 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.093 0.907 29 H 0.143 0.857 30 H 0.155 0.845 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.054 0.946 37 H 0.044 0.956 38 H 0.044 0.956 39 H 0.050 0.950 40 H 0.018 0.982 41 H 0.029 0.971 42 H 0.259 0.741 43 H 0.107 0.893 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.938 1.820 6.560 20.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.217 6.217 3 C 0.133 3.867 4 C -0.205 4.205 5 C -0.034 4.034 6 C -0.167 4.167 7 C -0.019 4.019 8 N -0.268 5.268 9 C -0.148 4.148 10 C -0.079 4.079 11 N -0.224 5.224 12 C -0.028 4.028 13 H 0.048 0.952 14 C -0.204 4.204 15 C -0.145 4.145 16 C -0.004 4.004 17 C -0.561 4.561 18 H 0.067 0.933 19 C -0.142 4.142 20 N -0.533 5.533 21 Si 0.713 3.287 22 H -0.204 1.204 23 H -0.214 1.214 24 H -0.204 1.204 25 C -0.046 4.046 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.112 0.888 29 H 0.161 0.839 30 H 0.172 0.828 31 H 0.095 0.905 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.105 0.895 35 H 0.096 0.904 36 H 0.073 0.927 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.069 0.931 40 H 0.036 0.964 41 H 0.047 0.953 42 H 0.068 0.932 43 H 0.125 0.875 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -19.022 1.542 6.702 20.227 hybrid contribution 0.202 -0.609 -0.787 1.015 sum -18.820 0.933 5.916 19.750 Atomic orbital electron populations 1.22804 0.77600 1.02682 1.02237 1.86240 1.22610 1.24720 1.88107 1.19772 0.89350 0.84534 0.93059 1.21005 0.91821 0.99217 1.08416 1.20737 0.98980 0.91512 0.92219 1.20332 0.94318 0.96211 1.05813 1.22269 0.92050 0.93524 0.94031 1.67230 1.40901 0.98760 1.19860 1.21013 0.98420 0.92533 1.02873 1.22281 0.90350 0.97329 0.97953 1.62623 1.54847 1.00677 1.04267 1.21790 0.96911 0.97177 0.86971 0.95209 1.21946 1.03364 0.94746 1.00354 1.21762 0.99604 0.95797 0.97381 1.19006 0.87383 0.96764 0.97210 1.21344 0.91967 1.24264 1.18526 0.93281 1.24971 0.97996 0.95815 0.95456 1.69963 1.09570 1.40088 1.33633 0.86777 0.79262 0.81479 0.81140 1.20439 1.21393 1.20408 1.21323 0.86196 0.93757 1.03278 0.92536 0.92481 0.88823 0.83945 0.82761 0.90500 0.90066 0.90825 0.89543 0.90390 0.92731 0.93666 0.93763 0.93147 0.96422 0.95257 0.93179 0.87477 0.88698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.40 10.38 101.05 1.05 1.45 16 2 O -0.31 -4.06 10.48 -18.72 -0.20 -4.26 16 3 C 0.31 4.38 7.49 -17.14 -0.13 4.25 16 4 C -0.18 -2.55 9.71 -39.21 -0.38 -2.93 16 5 C -0.03 -0.35 5.25 -104.66 -0.55 -0.90 16 6 C -0.16 -2.07 5.05 -104.64 -0.53 -2.60 16 7 C 0.14 1.67 10.83 -17.49 -0.19 1.48 16 8 N -0.54 -7.40 9.22 -13.28 -0.12 -7.52 16 9 C -0.11 -1.20 5.09 -27.97 -0.14 -1.34 16 10 C 0.05 0.62 5.39 -3.71 -0.02 0.60 16 11 N -0.50 -7.95 4.06 -228.28 -0.93 -8.88 16 12 C 0.08 1.31 1.64 -67.72 -0.11 1.20 16 13 H 0.03 0.48 5.74 -51.93 -0.30 0.19 16 14 C -0.15 -2.29 8.32 37.16 0.31 -1.98 16 15 C -0.11 -2.20 4.53 -26.73 -0.12 -2.32 16 16 C 0.03 0.84 4.54 -27.88 -0.13 0.72 16 17 C -0.52 -14.80 9.11 -34.44 -0.31 -15.11 16 18 H 0.05 1.36 7.74 -52.49 -0.41 0.96 16 19 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 20 N -0.89 -26.88 13.29 55.43 0.74 -26.15 16 21 Si 0.89 21.85 29.54 -169.99 -5.02 16.82 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 25 C 0.08 1.24 5.44 -5.25 -0.03 1.21 16 26 H 0.06 0.52 8.11 -51.93 -0.42 0.10 16 27 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16 28 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.14 1.82 8.06 -52.49 -0.42 1.40 16 30 H 0.16 1.42 8.06 -52.49 -0.42 1.00 16 31 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.08 0.91 6.07 -51.93 -0.32 0.60 16 33 H 0.07 0.87 8.05 -51.93 -0.42 0.46 16 34 H 0.09 1.05 6.70 -51.93 -0.35 0.70 16 35 H 0.08 1.42 6.42 -51.93 -0.33 1.08 16 36 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.04 0.58 5.70 -51.93 -0.30 0.29 16 38 H 0.04 0.89 6.40 -51.93 -0.33 0.56 16 39 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.02 0.47 6.29 -51.93 -0.33 0.15 16 41 H 0.03 0.79 7.68 -51.93 -0.40 0.39 16 42 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 43 H 0.11 1.78 5.93 -51.93 -0.31 1.47 16 44 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 340.20 15.07 5.13 5.13 Total: -1.00 -31.54 340.20 -8.50 -40.04 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -6.72 Total: -0.49 kcal Atomic # 6 Polarization: -13.32 SS G_CDS: -1.38 Total: -14.70 kcal Atomic # 7 Polarization: -42.23 SS G_CDS: -0.31 Total: -42.55 kcal Atomic # 8 Polarization: -4.06 SS G_CDS: -0.20 Total: -4.26 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.54 -8.50 -40.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172506513.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.581 kcal (2) G-P(sol) polarization free energy of solvation -31.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds