Wall clock time and date at job start Tue Mar 31 2020 07:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35672 * 117.00055 * 2 1 4 4 C 1.38870 * 119.72877 * 179.97438 * 3 2 1 5 5 C 1.38608 * 119.13391 * 179.97438 * 4 3 2 6 6 C 1.38240 * 118.59103 * 359.86892 * 5 4 3 7 7 C 1.38360 * 119.20017 * 0.19555 * 6 5 4 8 8 N 1.31882 * 120.90920 * 359.87531 * 7 6 5 9 9 C 1.50568 * 121.57443 * 180.21966 * 6 5 4 10 10 C 1.52955 * 109.85448 * 343.13021 * 9 6 5 11 11 N 1.47143 * 108.65536 * 50.37725 * 10 9 6 12 12 C 1.46896 * 111.00066 * 52.23107 * 11 10 9 13 13 H 1.08995 * 109.47284 * 294.81350 * 12 11 10 14 14 C 1.52997 * 109.47220 * 54.81643 * 12 11 10 15 15 C 1.53000 * 109.47025 * 174.81626 * 12 11 10 16 16 C 1.53005 * 109.47265 * 303.36816 * 15 12 11 17 17 C 1.50702 * 109.47283 * 184.76467 * 16 15 12 18 18 H 1.07997 * 119.99530 * 0.02562 * 17 16 15 19 19 C 1.37875 * 119.99963 * 180.02562 * 17 16 15 20 20 N 1.31512 * 120.00051 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 119.99959 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47224 * 60.00034 * 21 19 17 23 23 H 1.48505 * 109.47231 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47114 * 300.00274 * 21 19 17 25 25 C 1.46724 * 110.33967 * 288.74378 * 11 10 9 26 26 H 1.09000 * 109.47413 * 300.00359 * 1 2 3 27 27 H 1.09000 * 109.46973 * 59.99724 * 1 2 3 28 28 H 1.08996 * 109.47315 * 180.02562 * 1 2 3 29 29 H 1.08002 * 120.43542 * 359.97438 * 4 3 2 30 30 H 1.07992 * 119.55252 * 179.84774 * 7 6 5 31 31 H 1.08995 * 109.41089 * 223.01007 * 9 6 5 32 32 H 1.09007 * 109.34675 * 103.20303 * 9 6 5 33 33 H 1.09002 * 109.59955 * 290.63192 * 10 9 6 34 34 H 1.08990 * 109.60886 * 170.13234 * 10 9 6 35 35 H 1.09004 * 109.47508 * 59.99713 * 14 12 11 36 36 H 1.08999 * 109.47673 * 180.02562 * 14 12 11 37 37 H 1.08998 * 109.47281 * 299.99874 * 14 12 11 38 38 H 1.08999 * 109.47378 * 63.37158 * 15 12 11 39 39 H 1.09004 * 109.46858 * 183.37543 * 15 12 11 40 40 H 1.08997 * 109.47110 * 304.77392 * 16 15 12 41 41 H 1.09006 * 109.46483 * 64.76659 * 16 15 12 42 42 H 0.97004 * 120.00154 * 179.97438 * 20 19 17 43 43 H 1.09002 * 109.32541 * 172.60728 * 25 11 10 44 44 H 1.08998 * 109.33241 * 292.07372 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 3.4321 1.2749 0.0005 5 6 4.0485 2.5164 0.0000 6 6 3.2555 3.6487 -0.0039 7 6 1.8790 3.5089 -0.0029 8 7 1.3195 2.3146 -0.0008 9 6 3.8541 5.0303 -0.0096 10 6 5.3241 4.9614 0.4072 11 7 5.9945 3.9305 -0.4008 12 6 5.7583 4.1488 -1.8341 13 1 4.6983 4.0187 -2.0516 14 6 6.1857 5.5688 -2.2109 15 6 6.5730 3.1389 -2.6449 16 6 8.0528 3.2648 -2.2772 17 6 8.8686 2.3538 -3.1580 18 1 8.3803 1.7462 -3.9056 19 6 10.2381 2.2960 -3.0095 20 7 10.8325 3.0355 -2.0988 21 14 11.2492 1.1674 -4.1017 22 1 11.0585 1.5528 -5.5231 23 1 12.6854 1.2885 -3.7439 24 1 10.8075 -0.2369 -3.9061 25 6 5.5499 2.5932 0.0077 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 4.0229 0.3708 0.0014 30 1 1.2541 4.3896 -0.0034 31 1 3.3088 5.6643 0.6895 32 1 3.7814 5.4512 -1.0125 33 1 5.3929 4.7004 1.4633 34 1 5.7988 5.9272 0.2349 35 1 7.2459 5.6989 -1.9934 36 1 6.0101 5.7310 -3.2744 37 1 5.6054 6.2882 -1.6334 38 1 6.2274 2.1298 -2.4208 39 1 6.4447 3.3391 -3.7087 40 1 8.3767 4.2955 -2.4215 41 1 8.1931 2.9825 -1.2337 42 1 11.7960 2.9946 -1.9940 43 1 5.9527 1.8525 -0.6831 44 1 5.9164 2.3824 1.0123 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172506513.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:46:20 Heat of formation + Delta-G solvation = -24.268733 kcal Electronic energy + Delta-G solvation = -23697.825640 eV Core-core repulsion = 20421.335970 eV Total energy + Delta-G solvation = -3276.489670 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 7.77 seconds Orbital eigenvalues (eV) -42.17690 -40.39481 -38.51779 -35.94133 -34.37093 -33.93079 -32.22003 -30.89674 -29.99195 -28.04072 -26.91855 -25.98035 -24.88707 -23.81279 -23.50621 -21.86130 -19.66562 -18.75209 -18.42770 -18.14571 -17.16636 -17.00848 -16.51834 -16.29689 -15.96709 -15.84150 -15.43732 -15.05055 -14.80549 -14.46544 -14.15033 -13.86181 -13.71353 -13.58796 -13.27962 -13.16244 -12.94882 -12.81366 -12.74382 -12.61572 -12.42407 -12.28460 -12.08208 -11.80383 -11.72589 -11.32920 -11.10035 -10.93028 -10.72413 -10.47017 -10.39730 -9.33971 -9.07431 -8.10508 -6.19890 0.10854 0.19439 1.40849 1.43021 1.50768 2.11076 2.45392 2.68280 3.02999 3.21800 3.31834 3.68030 3.84843 3.88940 3.98809 4.15297 4.19327 4.25464 4.35747 4.40841 4.47509 4.50580 4.59924 4.67927 4.71620 4.80439 4.81114 4.87003 4.87479 4.91469 5.00938 5.07139 5.12882 5.17503 5.33872 5.37378 5.50686 5.53996 5.65151 5.99840 6.07381 6.20652 6.24131 6.30729 6.40375 6.79398 7.00280 7.47466 8.99948 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.018757 B = 0.004057 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.442386 B = 6900.424061 C = 7919.251211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.324 6.324 3 C 0.298 3.702 4 C -0.199 4.199 5 C -0.033 4.033 6 C -0.166 4.166 7 C 0.140 3.860 8 N -0.551 5.551 9 C -0.101 4.101 10 C 0.048 3.952 11 N -0.527 5.527 12 C 0.091 3.909 13 H 0.043 0.957 14 C -0.141 4.141 15 C -0.100 4.100 16 C 0.048 3.952 17 C -0.546 4.546 18 H 0.049 0.951 19 C 0.004 3.996 20 N -0.928 5.928 21 Si 0.954 3.046 22 H -0.270 1.270 23 H -0.283 1.283 24 H -0.271 1.271 25 C 0.088 3.912 26 H 0.058 0.942 27 H 0.055 0.945 28 H 0.121 0.879 29 H 0.141 0.859 30 H 0.189 0.811 31 H 0.109 0.891 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.093 0.907 35 H 0.046 0.954 36 H 0.059 0.941 37 H 0.078 0.922 38 H 0.040 0.960 39 H 0.047 0.953 40 H -0.005 1.005 41 H 0.004 0.996 42 H 0.261 0.739 43 H 0.081 0.919 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.657 2.459 6.415 21.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.232 6.232 3 C 0.121 3.879 4 C -0.220 4.220 5 C -0.043 4.043 6 C -0.169 4.169 7 C -0.016 4.016 8 N -0.275 5.275 9 C -0.140 4.140 10 C -0.080 4.080 11 N -0.249 5.249 12 C -0.017 4.017 13 H 0.061 0.939 14 C -0.199 4.199 15 C -0.137 4.137 16 C 0.011 3.989 17 C -0.585 4.585 18 H 0.067 0.933 19 C -0.193 4.193 20 N -0.568 5.568 21 Si 0.779 3.221 22 H -0.195 1.195 23 H -0.208 1.208 24 H -0.196 1.196 25 C -0.040 4.040 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.139 0.861 29 H 0.159 0.841 30 H 0.206 0.794 31 H 0.127 0.873 32 H 0.104 0.896 33 H 0.098 0.902 34 H 0.111 0.889 35 H 0.065 0.935 36 H 0.078 0.922 37 H 0.097 0.903 38 H 0.059 0.941 39 H 0.065 0.935 40 H 0.014 0.986 41 H 0.022 0.978 42 H 0.069 0.931 43 H 0.099 0.901 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -20.760 2.174 6.557 21.879 hybrid contribution 0.707 -0.813 -0.699 1.285 sum -20.053 1.360 5.857 20.935 Atomic orbital electron populations 1.23036 0.75833 1.04545 1.02215 1.86220 1.24438 1.24532 1.88012 1.19903 0.89481 0.85100 0.93393 1.21088 0.92237 0.99453 1.09188 1.20637 0.98188 0.92238 0.93209 1.20557 0.94602 0.96519 1.05221 1.22821 0.92222 0.94043 0.92523 1.67308 1.41024 0.99106 1.20021 1.21000 0.97137 0.91934 1.03903 1.22368 0.91463 0.96415 0.97748 1.62560 1.56449 1.01804 1.04088 1.21573 0.96552 0.96348 0.87204 0.93918 1.21890 1.01774 0.94910 1.01285 1.21597 0.97053 0.97181 0.97906 1.18763 0.90298 0.94644 0.95204 1.21817 0.92882 1.24776 1.18980 0.93264 1.25834 0.99297 0.97347 0.96856 1.70095 1.09923 1.41582 1.35201 0.85686 0.77543 0.79510 0.79389 1.19480 1.20833 1.19581 1.21134 0.87269 0.92946 1.02652 0.92328 0.92630 0.86120 0.84066 0.79394 0.87285 0.89642 0.90208 0.88894 0.93535 0.92245 0.90332 0.94130 0.93473 0.98639 0.97776 0.93055 0.90061 0.88432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.68 10.38 113.37 1.18 1.86 16 2 O -0.32 -8.33 10.48 -89.89 -0.94 -9.28 16 3 C 0.30 8.22 7.49 84.78 0.63 8.86 16 4 C -0.20 -5.55 9.71 22.51 0.22 -5.33 16 5 C -0.03 -0.91 5.25 -19.89 -0.10 -1.01 16 6 C -0.17 -3.82 5.05 -19.88 -0.10 -3.92 16 7 C 0.14 2.99 10.83 84.71 0.92 3.90 16 8 N -0.55 -13.98 9.22 -308.80 -2.85 -16.83 16 9 C -0.10 -1.86 5.09 29.79 0.15 -1.71 16 10 C 0.05 1.10 5.39 86.24 0.47 1.57 16 11 N -0.53 -16.57 4.06 -876.16 -3.56 -20.13 16 12 C 0.09 2.98 1.64 44.91 0.07 3.05 16 13 H 0.04 1.31 5.74 -2.39 -0.01 1.30 16 14 C -0.14 -4.27 8.32 71.98 0.60 -3.67 16 15 C -0.10 -4.15 4.53 30.60 0.14 -4.01 16 16 C 0.05 2.52 4.54 29.85 0.14 2.65 16 17 C -0.55 -31.67 9.11 25.60 0.23 -31.43 16 18 H 0.05 2.78 7.74 -2.91 -0.02 2.75 16 19 C 0.00 0.26 5.46 84.65 0.46 0.72 16 20 N -0.93 -57.04 13.29 21.45 0.28 -56.75 16 21 Si 0.95 45.16 29.54 68.60 2.03 47.18 16 22 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 23 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 24 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 25 C 0.09 2.70 5.44 85.48 0.46 3.16 16 26 H 0.06 1.00 8.11 -2.39 -0.02 0.99 16 27 H 0.05 0.99 8.10 -2.39 -0.02 0.97 16 28 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.14 3.79 8.06 -2.91 -0.02 3.77 16 30 H 0.19 2.63 8.06 -2.91 -0.02 2.61 16 31 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.09 1.56 6.07 -2.38 -0.01 1.55 16 33 H 0.08 1.75 8.05 -2.39 -0.02 1.73 16 34 H 0.09 2.03 6.70 -2.39 -0.02 2.01 16 35 H 0.05 1.70 6.42 -2.39 -0.02 1.69 16 36 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.08 1.82 5.70 -2.39 -0.01 1.81 16 38 H 0.04 1.69 6.40 -2.39 -0.02 1.68 16 39 H 0.05 1.96 8.14 -2.38 -0.02 1.94 16 40 H 0.00 -0.27 6.29 -2.39 -0.02 -0.28 16 41 H 0.00 0.22 7.68 -2.38 -0.02 0.20 16 42 H 0.26 15.15 8.31 -92.71 -0.77 14.37 16 43 H 0.08 2.86 5.93 -2.39 -0.01 2.84 16 44 H 0.10 2.82 8.14 -2.39 -0.02 2.80 16 Total: -1.00 -69.02 340.20 1.42 -67.60 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: 0.99 Total: 13.51 kcal Atomic # 6 Polarization: -30.79 SS G_CDS: 5.47 Total: -25.32 kcal Atomic # 7 Polarization: -87.58 SS G_CDS: -6.12 Total: -93.70 kcal Atomic # 8 Polarization: -8.33 SS G_CDS: -0.94 Total: -9.28 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.18 kcal Total: -69.02 1.42 -67.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172506513.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.336 kcal (2) G-P(sol) polarization free energy of solvation -69.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.77 seconds