Wall clock time and date at job start Tue Mar 31 2020 07:47:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47222 * 2 1 4 4 C 1.53005 * 109.46993 * 120.00188 * 2 1 3 5 5 C 1.53002 * 109.47040 * 184.99885 * 4 2 1 6 6 C 1.50692 * 109.47298 * 179.97438 * 5 4 2 7 7 H 1.08001 * 119.99843 * 359.97438 * 6 5 4 8 8 C 1.37873 * 120.00223 * 180.02562 * 6 5 4 9 9 N 1.31518 * 120.00144 * 359.97438 * 8 6 5 10 10 Si 1.86807 * 119.99979 * 180.02562 * 8 6 5 11 11 H 1.48493 * 109.47484 * 59.99670 * 10 8 6 12 12 H 1.48502 * 109.46935 * 180.02562 * 10 8 6 13 13 H 1.48505 * 109.47054 * 299.99653 * 10 8 6 14 14 N 1.46911 * 109.47118 * 239.99847 * 2 1 3 15 15 C 1.47841 * 110.99755 * 303.04551 * 14 2 1 16 16 C 1.54906 * 104.79591 * 146.36291 * 15 14 2 17 17 C 1.55135 * 101.65383 * 322.92940 * 16 15 14 18 18 H 1.09003 * 110.85172 * 277.19969 * 17 16 15 19 19 O 1.42900 * 110.71007 * 154.03346 * 17 16 15 20 20 C 1.35915 * 116.99910 * 90.42019 * 19 17 16 21 21 C 1.39145 * 120.47278 * 354.08278 * 20 19 17 22 22 C 1.38530 * 118.37174 * 179.75915 * 21 20 19 23 23 C 1.38249 * 119.22560 * 0.49801 * 22 21 20 24 24 N 1.31850 * 120.88603 * 359.76388 * 23 22 21 25 25 C 1.31844 * 121.77763 * 359.97438 * 24 23 22 26 26 C 1.47438 * 110.99606 * 63.88539 * 14 2 1 27 27 H 1.09010 * 109.47018 * 67.09023 * 1 2 3 28 28 H 1.09005 * 109.47470 * 187.09133 * 1 2 3 29 29 H 1.08998 * 109.47255 * 307.09107 * 1 2 3 30 30 H 1.08992 * 109.46699 * 304.99608 * 4 2 1 31 31 H 1.08996 * 109.46831 * 64.99963 * 4 2 1 32 32 H 1.09001 * 109.47347 * 300.00035 * 5 4 2 33 33 H 1.09001 * 109.46740 * 59.99834 * 5 4 2 34 34 H 0.96994 * 119.99777 * 179.97438 * 9 8 6 35 35 H 1.09002 * 110.37294 * 265.18935 * 15 14 2 36 36 H 1.08998 * 110.37590 * 27.42055 * 15 14 2 37 37 H 1.08995 * 110.99252 * 204.83250 * 16 15 14 38 38 H 1.09002 * 110.99091 * 81.01809 * 16 15 14 39 39 H 1.08002 * 120.81152 * 0.02562 * 21 20 19 40 40 H 1.08008 * 120.38619 * 180.21758 * 22 21 20 41 41 H 1.07999 * 119.56528 * 179.74419 * 23 22 21 42 42 H 1.07997 * 119.65653 * 180.02562 * 25 24 23 43 43 H 1.09005 * 109.88949 * 117.33549 * 26 14 2 44 44 H 1.08996 * 110.02977 * 356.22750 * 26 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5648 -0.6134 1.3137 6 6 4.0671 -1.3232 2.5444 7 1 3.3685 -1.8030 3.2139 8 6 5.4183 -1.3593 2.8163 9 7 6.2689 -0.7747 2.0012 10 14 6.0409 -2.2400 4.3416 11 1 5.6486 -3.6709 4.2819 12 1 7.5208 -2.1340 4.4048 13 1 5.4482 -1.6143 5.5510 14 7 2.0197 -0.6926 -1.1995 15 6 1.4867 -2.0697 -1.2708 16 6 1.3061 -2.3462 -2.7843 17 6 0.8304 -0.9629 -3.3009 18 1 -0.2417 -0.8393 -3.1479 19 8 1.1645 -0.7965 -4.6803 20 6 0.2411 -1.2006 -5.5920 21 6 -0.9137 -1.8598 -5.1821 22 6 -1.8281 -2.2478 -6.1476 23 6 -1.5609 -1.9791 -7.4771 24 7 -0.4541 -1.3571 -7.8327 25 6 0.4390 -0.9668 -6.9448 26 6 1.6245 0.0278 -2.4237 27 1 -0.3633 0.4001 -0.9467 28 1 -0.3634 -1.0198 0.1269 29 1 -0.3634 0.6197 0.8197 30 1 1.6054 -0.2618 2.1369 31 1 1.7516 -1.7715 1.2055 32 1 3.9994 -1.0729 0.4260 33 1 3.8531 0.4369 1.3574 34 1 7.2194 -0.7998 2.1928 35 1 2.1970 -2.7744 -0.8384 36 1 0.5286 -2.1330 -0.7548 37 1 0.5462 -3.1089 -2.9540 38 1 2.2522 -2.6307 -3.2448 39 1 -1.0947 -2.0601 -4.1363 40 1 -2.7371 -2.7585 -5.8654 41 1 -2.2681 -2.2829 -8.2348 42 1 1.3337 -0.4595 -7.2742 43 1 2.5125 0.3664 -2.9577 44 1 0.9975 0.8819 -2.1684 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172507060.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:32 Heat of formation + Delta-G solvation = 0.633698 kcal Electronic energy + Delta-G solvation = -22977.261978 eV Core-core repulsion = 19701.852158 eV Total energy + Delta-G solvation = -3275.409819 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 5.63 seconds Orbital eigenvalues (eV) -40.99144 -39.60262 -37.91912 -34.35710 -32.63235 -32.49901 -30.69321 -29.96499 -28.67830 -28.24976 -25.17060 -24.12981 -23.43964 -22.48107 -21.24265 -20.73738 -19.05081 -18.73210 -17.06693 -16.92784 -16.26175 -15.94036 -15.45370 -15.14503 -14.62607 -14.37495 -14.33563 -14.00653 -13.81093 -13.45152 -13.17557 -12.71884 -12.59257 -12.36407 -12.13744 -12.09936 -11.71603 -11.60317 -11.24480 -11.10995 -11.02459 -10.81331 -10.68202 -10.47969 -10.24536 -10.07369 -9.86752 -9.67612 -9.23922 -8.93067 -8.66681 -8.25666 -7.91948 -5.90402 -3.92411 0.83864 0.95989 2.80854 3.36596 3.41377 3.43297 3.51179 4.10015 4.23362 4.35343 4.40073 4.50817 4.51987 4.61222 4.69705 4.82630 4.90490 5.15664 5.22633 5.36084 5.38410 5.44519 5.44757 5.50443 5.58588 5.64768 5.73544 5.77708 5.89286 5.97630 6.00809 6.16938 6.18684 6.25800 6.30513 6.58003 6.79512 7.04197 7.20833 7.27055 7.42320 7.67752 7.81685 8.03068 8.18741 8.53717 9.16308 9.70455 11.20464 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.032877 B = 0.002840 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.443057 B = 9858.103478 C =10103.900768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.073 3.927 3 H 0.081 0.919 4 C -0.101 4.101 5 C 0.029 3.971 6 C -0.521 4.521 7 H 0.050 0.950 8 C 0.057 3.943 9 N -0.893 5.893 10 Si 0.887 3.113 11 H -0.278 1.278 12 H -0.288 1.288 13 H -0.278 1.278 14 N -0.499 5.499 15 C 0.041 3.959 16 C -0.150 4.150 17 C 0.062 3.938 18 H 0.078 0.922 19 O -0.293 6.293 20 C 0.089 3.911 21 C -0.169 4.169 22 C -0.131 4.131 23 C 0.051 3.949 24 N -0.448 5.448 25 C 0.071 3.929 26 C 0.047 3.953 27 H 0.046 0.954 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.050 0.950 31 H 0.047 0.953 32 H 0.031 0.969 33 H 0.010 0.990 34 H 0.259 0.741 35 H 0.092 0.908 36 H 0.054 0.946 37 H 0.073 0.927 38 H 0.090 0.910 39 H 0.140 0.860 40 H 0.136 0.864 41 H 0.157 0.843 42 H 0.164 0.836 43 H 0.091 0.909 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.290 -1.378 -15.213 23.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.035 4.035 3 H 0.099 0.901 4 C -0.139 4.139 5 C -0.008 4.008 6 C -0.560 4.560 7 H 0.068 0.932 8 C -0.144 4.144 9 N -0.532 5.532 10 Si 0.715 3.285 11 H -0.204 1.204 12 H -0.214 1.214 13 H -0.204 1.204 14 N -0.223 5.223 15 C -0.087 4.087 16 C -0.188 4.188 17 C 0.005 3.995 18 H 0.096 0.904 19 O -0.204 6.204 20 C 0.040 3.960 21 C -0.195 4.195 22 C -0.150 4.150 23 C -0.106 4.106 24 N -0.157 5.157 25 C -0.088 4.088 26 C -0.081 4.081 27 H 0.065 0.935 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.050 0.950 33 H 0.028 0.972 34 H 0.069 0.931 35 H 0.110 0.890 36 H 0.072 0.928 37 H 0.091 0.909 38 H 0.108 0.892 39 H 0.157 0.843 40 H 0.154 0.846 41 H 0.174 0.826 42 H 0.181 0.819 43 H 0.109 0.891 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -16.194 -1.096 -16.088 22.853 hybrid contribution -0.872 -0.745 1.935 2.250 sum -17.066 -1.841 -14.153 22.247 Atomic orbital electron populations 1.22570 0.98868 1.01856 1.01329 1.22115 0.91021 0.98997 0.91401 0.90070 1.21693 1.00961 0.98214 0.93008 1.19000 0.87922 0.96813 0.97031 1.21280 0.91850 1.34370 1.08484 0.93192 1.24998 0.97140 0.95740 0.96482 1.69967 1.02272 1.44144 1.36867 0.86746 0.77641 0.80253 0.83827 1.20388 1.21365 1.20415 1.63878 1.56525 1.01374 1.00566 1.23050 0.99712 0.91850 0.94051 1.23262 1.02813 0.95664 0.97089 1.23919 0.99488 0.97553 0.78581 0.90432 1.86182 1.40350 1.78253 1.15607 1.20252 0.89439 0.94840 0.91435 1.21802 0.94924 1.01515 1.01258 1.22005 0.99786 0.99502 0.93757 1.22644 0.95088 0.97914 0.94952 1.67722 1.02129 1.08874 1.37009 1.22259 0.99654 1.00768 0.86144 1.22841 0.99427 0.95173 0.90638 0.93483 0.92423 0.91993 0.93162 0.93378 0.95022 0.97182 0.93108 0.89003 0.92760 0.90872 0.89168 0.84282 0.84591 0.82620 0.81884 0.89090 0.91743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.37 8.52 37.16 0.32 -2.05 16 2 C 0.07 1.18 2.18 -67.71 -0.15 1.03 16 3 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 4 C -0.10 -2.01 4.54 -26.73 -0.12 -2.13 16 5 C 0.03 0.76 4.86 -27.89 -0.14 0.62 16 6 C -0.52 -14.82 9.11 -34.45 -0.31 -15.14 16 7 H 0.05 1.38 7.74 -52.49 -0.41 0.97 16 8 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 9 N -0.89 -27.23 13.29 55.43 0.74 -26.50 16 10 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 13 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 14 N -0.50 -7.87 4.63 -223.29 -1.03 -8.90 16 15 C 0.04 0.56 5.18 -2.30 -0.01 0.55 16 16 C -0.15 -1.75 6.63 -24.60 -0.16 -1.91 16 17 C 0.06 0.70 2.74 -24.91 -0.07 0.63 16 18 H 0.08 0.76 6.31 -51.93 -0.33 0.44 16 19 O -0.29 -3.53 9.88 -19.47 -0.19 -3.72 16 20 C 0.09 0.97 6.69 -39.07 -0.26 0.71 16 21 C -0.17 -1.57 9.00 -39.14 -0.35 -1.92 16 22 C -0.13 -1.04 10.11 -39.47 -0.40 -1.44 16 23 C 0.05 0.45 11.18 -17.54 -0.20 0.25 16 24 N -0.45 -4.96 10.36 -13.13 -0.14 -5.10 16 25 C 0.07 0.77 11.14 -17.37 -0.19 0.58 16 26 C 0.05 0.62 6.01 -2.84 -0.02 0.61 16 27 H 0.05 0.52 6.42 -51.92 -0.33 0.19 16 28 H 0.06 0.70 6.20 -51.93 -0.32 0.38 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.05 0.94 7.09 -51.93 -0.37 0.57 16 32 H 0.03 0.88 7.75 -51.93 -0.40 0.47 16 33 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 35 H 0.09 1.45 8.10 -51.93 -0.42 1.03 16 36 H 0.05 0.69 5.45 -51.93 -0.28 0.41 16 37 H 0.07 0.71 7.77 -51.93 -0.40 0.30 16 38 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.14 1.12 5.76 -52.49 -0.30 0.82 16 40 H 0.14 0.70 8.06 -52.48 -0.42 0.28 16 41 H 0.16 0.93 8.06 -52.49 -0.42 0.51 16 42 H 0.16 1.54 8.06 -52.49 -0.42 1.11 16 43 H 0.09 1.29 8.06 -51.93 -0.42 0.87 16 44 H 0.06 0.78 6.33 -51.93 -0.33 0.45 16 LS Contribution 348.53 15.07 5.25 5.25 Total: -1.00 -31.69 348.53 -9.39 -41.08 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -6.83 Total: -0.92 kcal Atomic # 6 Polarization: -15.87 SS G_CDS: -2.16 Total: -18.04 kcal Atomic # 7 Polarization: -40.06 SS G_CDS: -0.43 Total: -40.50 kcal Atomic # 8 Polarization: -3.53 SS G_CDS: -0.19 Total: -3.72 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.69 -9.39 -41.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172507060.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.718 kcal (2) G-P(sol) polarization free energy of solvation -31.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.085 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.63 seconds