Wall clock time and date at job start Tue Mar 31 2020 07:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47222 * 2 1 4 4 C 1.53005 * 109.46993 * 120.00188 * 2 1 3 5 5 C 1.53002 * 109.47040 * 184.99885 * 4 2 1 6 6 C 1.50692 * 109.47298 * 179.97438 * 5 4 2 7 7 H 1.08001 * 119.99843 * 359.97438 * 6 5 4 8 8 C 1.37873 * 120.00223 * 180.02562 * 6 5 4 9 9 N 1.31518 * 120.00144 * 359.97438 * 8 6 5 10 10 Si 1.86807 * 119.99979 * 180.02562 * 8 6 5 11 11 H 1.48493 * 109.47484 * 59.99670 * 10 8 6 12 12 H 1.48502 * 109.46935 * 180.02562 * 10 8 6 13 13 H 1.48505 * 109.47054 * 299.99653 * 10 8 6 14 14 N 1.46911 * 109.47118 * 239.99847 * 2 1 3 15 15 C 1.47841 * 110.99755 * 303.04551 * 14 2 1 16 16 C 1.54906 * 104.79591 * 146.36291 * 15 14 2 17 17 C 1.55135 * 101.65383 * 322.92940 * 16 15 14 18 18 H 1.09003 * 110.85172 * 277.19969 * 17 16 15 19 19 O 1.42900 * 110.71007 * 154.03346 * 17 16 15 20 20 C 1.35915 * 116.99910 * 90.42019 * 19 17 16 21 21 C 1.39145 * 120.47278 * 354.08278 * 20 19 17 22 22 C 1.38530 * 118.37174 * 179.75915 * 21 20 19 23 23 C 1.38249 * 119.22560 * 0.49801 * 22 21 20 24 24 N 1.31850 * 120.88603 * 359.76388 * 23 22 21 25 25 C 1.31844 * 121.77763 * 359.97438 * 24 23 22 26 26 C 1.47438 * 110.99606 * 63.88539 * 14 2 1 27 27 H 1.09010 * 109.47018 * 67.09023 * 1 2 3 28 28 H 1.09005 * 109.47470 * 187.09133 * 1 2 3 29 29 H 1.08998 * 109.47255 * 307.09107 * 1 2 3 30 30 H 1.08992 * 109.46699 * 304.99608 * 4 2 1 31 31 H 1.08996 * 109.46831 * 64.99963 * 4 2 1 32 32 H 1.09001 * 109.47347 * 300.00035 * 5 4 2 33 33 H 1.09001 * 109.46740 * 59.99834 * 5 4 2 34 34 H 0.96994 * 119.99777 * 179.97438 * 9 8 6 35 35 H 1.09002 * 110.37294 * 265.18935 * 15 14 2 36 36 H 1.08998 * 110.37590 * 27.42055 * 15 14 2 37 37 H 1.08995 * 110.99252 * 204.83250 * 16 15 14 38 38 H 1.09002 * 110.99091 * 81.01809 * 16 15 14 39 39 H 1.08002 * 120.81152 * 0.02562 * 21 20 19 40 40 H 1.08008 * 120.38619 * 180.21758 * 22 21 20 41 41 H 1.07999 * 119.56528 * 179.74419 * 23 22 21 42 42 H 1.07997 * 119.65653 * 180.02562 * 25 24 23 43 43 H 1.09005 * 109.88949 * 117.33549 * 26 14 2 44 44 H 1.08996 * 110.02977 * 356.22750 * 26 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5648 -0.6134 1.3137 6 6 4.0671 -1.3232 2.5444 7 1 3.3685 -1.8030 3.2139 8 6 5.4183 -1.3593 2.8163 9 7 6.2689 -0.7747 2.0012 10 14 6.0409 -2.2400 4.3416 11 1 5.6486 -3.6709 4.2819 12 1 7.5208 -2.1340 4.4048 13 1 5.4482 -1.6143 5.5510 14 7 2.0197 -0.6926 -1.1995 15 6 1.4867 -2.0697 -1.2708 16 6 1.3061 -2.3462 -2.7843 17 6 0.8304 -0.9629 -3.3009 18 1 -0.2417 -0.8393 -3.1479 19 8 1.1645 -0.7965 -4.6803 20 6 0.2411 -1.2006 -5.5920 21 6 -0.9137 -1.8598 -5.1821 22 6 -1.8281 -2.2478 -6.1476 23 6 -1.5609 -1.9791 -7.4771 24 7 -0.4541 -1.3571 -7.8327 25 6 0.4390 -0.9668 -6.9448 26 6 1.6245 0.0278 -2.4237 27 1 -0.3633 0.4001 -0.9467 28 1 -0.3634 -1.0198 0.1269 29 1 -0.3634 0.6197 0.8197 30 1 1.6054 -0.2618 2.1369 31 1 1.7516 -1.7715 1.2055 32 1 3.9994 -1.0729 0.4260 33 1 3.8531 0.4369 1.3574 34 1 7.2194 -0.7998 2.1928 35 1 2.1970 -2.7744 -0.8384 36 1 0.5286 -2.1330 -0.7548 37 1 0.5462 -3.1089 -2.9540 38 1 2.2522 -2.6307 -3.2448 39 1 -1.0947 -2.0601 -4.1363 40 1 -2.7371 -2.7585 -5.8654 41 1 -2.2681 -2.2829 -8.2348 42 1 1.3337 -0.4595 -7.2742 43 1 2.5125 0.3664 -2.9577 44 1 0.9975 0.8819 -2.1684 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172507060.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:21 Heat of formation + Delta-G solvation = -19.455964 kcal Electronic energy + Delta-G solvation = -22978.133131 eV Core-core repulsion = 19701.852158 eV Total energy + Delta-G solvation = -3276.280972 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = -4.08 seconds Orbital eigenvalues (eV) -41.79684 -40.58179 -38.86686 -35.94693 -34.43918 -33.19009 -31.74903 -31.32111 -29.90628 -29.23610 -26.99910 -24.95915 -24.18785 -23.75358 -22.76776 -21.87325 -20.36001 -19.52031 -18.37552 -17.82473 -17.65816 -17.16083 -16.53856 -16.31023 -16.10679 -15.57219 -15.13497 -14.93968 -14.77056 -14.50231 -14.42505 -14.17579 -13.84864 -13.57336 -13.45014 -13.16158 -12.96350 -12.85737 -12.73241 -12.57202 -12.40593 -12.23810 -12.00106 -11.78205 -11.63946 -11.45535 -11.23813 -10.91919 -10.75515 -10.56965 -10.48688 -9.42994 -9.07593 -8.13678 -6.24640 0.15724 0.25330 1.39696 1.42857 1.50614 1.97228 2.43372 2.80833 3.03003 3.18682 3.41536 3.56599 3.62766 3.68868 3.82048 3.91573 4.01023 4.12831 4.15702 4.26774 4.30690 4.42969 4.44257 4.51164 4.72320 4.75880 4.76400 4.88333 4.90203 4.95650 4.98069 5.03831 5.09538 5.11490 5.16832 5.32986 5.45262 5.51717 5.58686 5.88077 6.00988 6.11923 6.22734 6.28220 6.33592 6.95693 6.97629 7.43780 8.97475 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.032877 B = 0.002840 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.443057 B = 9858.103478 C =10103.900768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.078 3.922 3 H 0.066 0.934 4 C -0.089 4.089 5 C 0.038 3.962 6 C -0.542 4.542 7 H 0.057 0.943 8 C -0.002 4.002 9 N -0.933 5.933 10 Si 0.961 3.039 11 H -0.267 1.267 12 H -0.285 1.285 13 H -0.267 1.267 14 N -0.533 5.533 15 C 0.042 3.958 16 C -0.141 4.141 17 C 0.073 3.927 18 H 0.104 0.896 19 O -0.310 6.310 20 C 0.070 3.930 21 C -0.169 4.169 22 C -0.123 4.123 23 C 0.046 3.954 24 N -0.474 5.474 25 C 0.052 3.948 26 C 0.048 3.952 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.001 0.999 33 H -0.023 1.023 34 H 0.261 0.739 35 H 0.062 0.938 36 H 0.074 0.926 37 H 0.101 0.899 38 H 0.069 0.931 39 H 0.157 0.843 40 H 0.171 0.829 41 H 0.183 0.817 42 H 0.163 0.837 43 H 0.070 0.930 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.301 -2.590 -14.880 25.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.030 4.030 3 H 0.084 0.916 4 C -0.127 4.127 5 C 0.001 3.999 6 C -0.580 4.580 7 H 0.075 0.925 8 C -0.200 4.200 9 N -0.574 5.574 10 Si 0.785 3.215 11 H -0.192 1.192 12 H -0.211 1.211 13 H -0.192 1.192 14 N -0.258 5.258 15 C -0.085 4.085 16 C -0.180 4.180 17 C 0.016 3.984 18 H 0.122 0.878 19 O -0.222 6.222 20 C 0.022 3.978 21 C -0.196 4.196 22 C -0.142 4.142 23 C -0.111 4.111 24 N -0.183 5.183 25 C -0.106 4.106 26 C -0.080 4.080 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.019 0.981 33 H -0.005 1.005 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.092 0.908 37 H 0.120 0.880 38 H 0.088 0.912 39 H 0.174 0.826 40 H 0.189 0.811 41 H 0.200 0.800 42 H 0.180 0.820 43 H 0.088 0.912 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -19.217 -2.306 -15.760 24.960 hybrid contribution 0.068 -0.372 1.760 1.800 sum -19.150 -2.678 -14.001 23.873 Atomic orbital electron populations 1.22429 0.95279 1.02866 1.02865 1.21893 0.93755 0.97471 0.89893 0.91550 1.21489 0.96567 0.99162 0.95473 1.18819 0.92144 0.93970 0.94945 1.21769 0.92454 1.34445 1.09365 0.92478 1.25971 0.97483 0.96527 0.99982 1.70123 1.02597 1.45637 1.39041 0.85574 0.76955 0.79296 0.79641 1.19201 1.21079 1.19167 1.63682 1.58217 1.02569 1.01341 1.23001 0.99574 0.90206 0.95761 1.23188 1.02807 0.96831 0.95126 1.23786 1.00288 0.96167 0.78148 0.87837 1.86153 1.41297 1.78824 1.15914 1.20356 0.90196 0.96101 0.91124 1.22069 0.94263 1.00732 1.02492 1.22385 1.00458 0.98429 0.92947 1.23220 0.94666 0.96821 0.96411 1.67734 1.03125 1.09949 1.37501 1.22331 1.00111 1.01570 0.86574 1.22755 0.99278 0.96023 0.89918 0.91369 0.91427 0.91221 0.92759 0.92950 0.98090 1.00457 0.93046 0.91984 0.90763 0.88036 0.91199 0.82588 0.81120 0.79967 0.81981 0.91159 0.90272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.94 8.52 71.98 0.61 -3.33 16 2 C 0.08 2.50 2.18 44.91 0.10 2.60 16 3 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 4 C -0.09 -3.57 4.54 30.60 0.14 -3.43 16 5 C 0.04 2.06 4.86 29.85 0.15 2.21 16 6 C -0.54 -31.45 9.11 25.60 0.23 -31.22 16 7 H 0.06 3.15 7.74 -2.91 -0.02 3.13 16 8 C 0.00 -0.14 5.46 84.65 0.46 0.33 16 9 N -0.93 -58.70 13.29 21.45 0.28 -58.41 16 10 Si 0.96 45.14 29.54 68.60 2.03 47.16 16 11 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 12 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 13 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 14 N -0.53 -17.00 4.63 -860.35 -3.98 -20.98 16 15 C 0.04 1.13 5.18 86.77 0.45 1.58 16 16 C -0.14 -3.11 6.63 31.98 0.21 -2.90 16 17 C 0.07 1.53 2.74 31.77 0.09 1.62 16 18 H 0.10 1.65 6.31 -2.39 -0.02 1.64 16 19 O -0.31 -7.31 9.88 -92.59 -0.91 -8.23 16 20 C 0.07 1.45 6.69 22.60 0.15 1.61 16 21 C -0.17 -2.63 9.00 22.56 0.20 -2.43 16 22 C -0.12 -1.51 10.11 22.34 0.23 -1.28 16 23 C 0.05 0.69 11.18 84.69 0.95 1.64 16 24 N -0.47 -10.03 10.36 -195.45 -2.02 -12.05 16 25 C 0.05 1.12 11.14 84.80 0.94 2.07 16 26 C 0.05 1.26 6.01 86.65 0.52 1.78 16 27 H 0.07 1.27 6.42 -2.38 -0.02 1.25 16 28 H 0.07 1.40 6.20 -2.38 -0.01 1.38 16 29 H 0.07 1.47 8.14 -2.39 -0.02 1.46 16 30 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.05 2.03 7.09 -2.39 -0.02 2.02 16 32 H 0.00 0.04 7.75 -2.39 -0.02 0.02 16 33 H -0.02 -1.36 8.14 -2.39 -0.02 -1.38 16 34 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 35 H 0.06 2.03 8.10 -2.39 -0.02 2.01 16 36 H 0.07 1.70 5.45 -2.39 -0.01 1.69 16 37 H 0.10 1.66 7.77 -2.39 -0.02 1.64 16 38 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.16 1.83 5.76 -2.91 -0.02 1.81 16 40 H 0.17 0.88 8.06 -2.91 -0.02 0.86 16 41 H 0.18 1.59 8.06 -2.91 -0.02 1.57 16 42 H 0.16 3.24 8.06 -2.91 -0.02 3.22 16 43 H 0.07 2.09 8.06 -2.38 -0.02 2.07 16 44 H 0.08 1.80 6.33 -2.39 -0.02 1.79 16 Total: -1.00 -71.50 348.53 1.80 -69.70 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: 0.98 Total: 11.98 kcal Atomic # 6 Polarization: -34.60 SS G_CDS: 5.43 Total: -29.17 kcal Atomic # 7 Polarization: -85.73 SS G_CDS: -5.72 Total: -91.45 kcal Atomic # 8 Polarization: -7.31 SS G_CDS: -0.91 Total: -8.23 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.16 kcal Total: -71.50 1.80 -69.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172507060.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.244 kcal (2) G-P(sol) polarization free energy of solvation -71.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -4.08 seconds