Wall clock time and date at job start Tue Mar 31 2020 09:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46492 * 109.47161 * 2 1 4 4 C 1.36023 * 119.61725 * 270.02324 * 3 2 1 5 5 C 1.35220 * 120.82121 * 179.71286 * 4 3 2 6 6 C 1.40258 * 120.03936 * 0.52685 * 5 4 3 7 7 C 1.36775 * 119.24032 * 359.47969 * 6 5 4 8 8 N 1.40051 * 120.39891 * 180.23462 * 7 6 5 9 9 C 1.46496 * 120.00068 * 0.02562 * 8 7 6 10 10 C 1.53006 * 109.46907 * 274.99980 * 9 8 7 11 11 C 1.52998 * 109.47016 * 179.97438 * 10 9 8 12 12 C 1.53002 * 109.47063 * 60.00094 * 11 10 9 13 13 C 1.50698 * 109.47348 * 179.97438 * 12 11 10 14 14 H 1.08008 * 119.99579 * 119.99692 * 13 12 11 15 15 C 1.37868 * 120.00184 * 300.00153 * 13 12 11 16 16 N 1.31511 * 120.00340 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00130 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46910 * 59.99931 * 17 15 13 19 19 H 1.48499 * 109.47328 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47382 * 300.00147 * 17 15 13 21 21 C 1.52997 * 109.47090 * 299.99969 * 12 11 10 22 22 C 1.52993 * 109.47430 * 154.99809 * 9 8 7 23 23 C 1.34673 * 119.61932 * 90.00175 * 3 2 1 24 24 O 1.22076 * 120.03147 * 0.02562 * 23 3 2 25 25 H 1.08996 * 109.47324 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47130 * 299.99980 * 1 2 3 27 27 H 1.08997 * 109.47515 * 59.99763 * 1 2 3 28 28 H 1.09000 * 109.46449 * 239.99718 * 2 1 3 29 29 H 1.08996 * 109.46823 * 120.00518 * 2 1 3 30 30 H 1.08001 * 119.59126 * 0.02562 * 4 3 2 31 31 H 1.07996 * 119.98011 * 180.28262 * 5 4 3 32 32 H 1.08002 * 120.38206 * 179.76385 * 6 5 4 33 33 H 0.96999 * 119.99734 * 179.97438 * 8 7 6 34 34 H 1.08999 * 109.47080 * 34.99694 * 9 8 7 35 35 H 1.08999 * 109.47017 * 299.99753 * 10 9 8 36 36 H 1.09001 * 109.47313 * 59.99990 * 10 9 8 37 37 H 1.08991 * 109.47392 * 300.00191 * 11 10 9 38 38 H 1.09001 * 109.47315 * 179.97438 * 11 10 9 39 39 H 1.09003 * 109.47037 * 59.99348 * 12 11 10 40 40 H 0.97001 * 120.00624 * 180.02562 * 16 15 13 41 41 H 1.09004 * 109.47352 * 299.99907 * 21 12 11 42 42 H 1.09001 * 109.47275 * 179.97438 * 21 12 11 43 43 H 1.09001 * 109.47017 * 300.00227 * 22 9 8 44 44 H 1.09008 * 109.46519 * 59.99748 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2420 2.0151 -1.1825 5 6 2.6871 3.2916 -1.2109 6 6 2.9348 3.9757 -0.0118 7 6 2.7106 3.3402 1.1785 8 7 2.9451 4.0020 2.3903 9 6 3.4330 5.3834 2.3881 10 6 4.9577 5.3855 2.2607 11 6 5.4672 6.8282 2.2578 12 6 5.0636 7.5142 3.5644 13 6 5.5659 8.9350 3.5619 14 1 4.8674 9.7548 3.6427 15 6 6.9170 9.1883 3.4562 16 7 7.7675 8.1901 3.3572 17 14 7.5396 10.9495 3.4523 18 1 7.1477 11.6158 4.7203 19 1 9.0194 10.9512 3.3285 20 1 6.9465 11.6817 2.3046 21 6 3.5390 7.5120 3.6918 22 6 3.0294 6.0689 3.6949 23 6 2.2403 2.0087 1.1708 24 8 2.0351 1.4270 2.2242 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8932 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 2.0569 1.4941 -2.1103 31 1 2.8558 3.7834 -2.1575 32 1 3.2941 4.9940 -0.0281 33 1 2.7838 3.5459 3.2310 34 1 2.9973 5.9212 1.5461 35 1 5.3934 4.8477 3.1027 36 1 5.2453 4.8971 1.3296 37 1 5.0315 7.3656 1.4156 38 1 6.5535 6.8297 2.1675 39 1 5.4993 6.9766 4.4067 40 1 8.7181 8.3683 3.2832 41 1 3.1032 8.0496 2.8496 42 1 3.2514 8.0004 4.6229 43 1 1.9432 6.0673 3.7857 44 1 3.4652 5.5309 4.5370 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173330489.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:04:43 Heat of formation + Delta-G solvation = -37.326300 kcal Electronic energy + Delta-G solvation = -23322.438065 eV Core-core repulsion = 20045.382177 eV Total energy + Delta-G solvation = -3277.055888 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 2.47 seconds Orbital eigenvalues (eV) -42.28726 -39.81657 -37.89533 -37.12081 -35.09227 -33.83025 -31.45747 -31.30952 -30.85795 -29.00080 -26.55917 -25.46886 -23.84049 -23.36007 -23.02652 -21.86360 -20.60542 -18.78541 -18.37761 -18.37031 -17.33270 -16.82181 -16.67615 -16.28407 -16.12623 -15.41838 -15.13123 -14.91711 -14.72492 -14.66106 -14.15967 -14.00935 -13.59680 -13.22085 -13.20443 -13.00068 -12.90122 -12.81321 -12.71513 -12.58679 -12.32507 -12.17971 -12.08404 -12.02601 -11.83645 -11.39918 -11.19484 -11.00304 -10.76688 -10.56723 -10.35526 -9.83874 -8.05570 -7.87725 -6.19314 0.17697 1.01659 1.43115 1.43942 1.51559 1.67162 2.45136 2.62396 2.80561 3.21360 3.64794 3.85890 4.00296 4.04883 4.10555 4.19978 4.27969 4.40461 4.41970 4.49339 4.54395 4.65478 4.68194 4.78440 4.79650 4.92489 4.93938 4.96913 5.10446 5.14705 5.22881 5.23619 5.31049 5.36533 5.44642 5.49115 5.62304 5.69141 5.83225 6.04652 6.10898 6.22068 6.39078 6.43402 6.78367 6.93606 7.04132 7.48844 8.98640 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.036039 B = 0.003190 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.748134 B = 8774.344627 C = 9090.426338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.086 3.914 3 N -0.482 5.482 4 C 0.065 3.935 5 C -0.174 4.174 6 C -0.150 4.150 7 C 0.073 3.927 8 N -0.728 5.728 9 C 0.172 3.828 10 C -0.116 4.116 11 C -0.096 4.096 12 C 0.044 3.956 13 C -0.533 4.533 14 H 0.053 0.947 15 C 0.011 3.989 16 N -0.918 5.918 17 Si 0.951 3.049 18 H -0.273 1.273 19 H -0.286 1.286 20 H -0.269 1.269 21 C -0.096 4.096 22 C -0.114 4.114 23 C 0.491 3.509 24 O -0.603 6.603 25 H 0.094 0.906 26 H 0.030 0.970 27 H 0.075 0.925 28 H 0.132 0.868 29 H 0.075 0.925 30 H 0.204 0.796 31 H 0.170 0.830 32 H 0.127 0.873 33 H 0.397 0.603 34 H 0.081 0.919 35 H 0.036 0.964 36 H 0.053 0.947 37 H 0.036 0.964 38 H 0.058 0.942 39 H -0.011 1.011 40 H 0.259 0.741 41 H 0.057 0.943 42 H 0.051 0.949 43 H 0.075 0.925 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.529 -14.783 -13.378 24.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.034 4.034 3 N -0.194 5.194 4 C -0.059 4.059 5 C -0.196 4.196 6 C -0.180 4.180 7 C -0.033 4.033 8 N -0.357 5.357 9 C 0.067 3.933 10 C -0.155 4.155 11 C -0.135 4.135 12 C 0.025 3.975 13 C -0.571 4.571 14 H 0.072 0.928 15 C -0.187 4.187 16 N -0.558 5.558 17 Si 0.777 3.223 18 H -0.199 1.199 19 H -0.212 1.212 20 H -0.194 1.194 21 C -0.134 4.134 22 C -0.152 4.152 23 C 0.292 3.708 24 O -0.491 6.491 25 H 0.113 0.887 26 H 0.050 0.950 27 H 0.094 0.906 28 H 0.150 0.850 29 H 0.094 0.906 30 H 0.221 0.779 31 H 0.188 0.812 32 H 0.145 0.855 33 H 0.231 0.769 34 H 0.099 0.901 35 H 0.055 0.945 36 H 0.071 0.929 37 H 0.054 0.946 38 H 0.076 0.924 39 H 0.007 0.993 40 H 0.068 0.932 41 H 0.075 0.925 42 H 0.070 0.930 43 H 0.093 0.907 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.438 -15.065 -12.777 23.891 hybrid contribution 0.884 0.952 0.893 1.577 sum -12.554 -14.113 -11.883 22.316 Atomic orbital electron populations 1.22073 0.93697 1.04052 1.02013 1.22140 0.96226 0.79414 1.05637 1.45261 1.53044 1.15186 1.05877 1.22278 0.99841 0.94460 0.89345 1.20712 1.05807 0.94447 0.98667 1.21013 1.04627 1.01265 0.91079 1.18688 1.03461 0.92272 0.88852 1.44586 1.72856 1.13527 1.04750 1.20801 0.92882 0.80841 0.98790 1.21906 0.95812 0.97657 1.00083 1.21365 1.01409 0.92578 0.98169 1.18651 0.91402 0.94185 0.93247 1.21593 0.92288 0.93477 1.49785 0.92830 1.25744 0.97357 1.00614 0.95009 1.70021 1.02392 1.32221 1.51127 0.85715 0.76940 0.80809 0.78806 1.19861 1.21209 1.19431 1.21446 0.96745 0.94495 1.00724 1.21714 1.00701 0.96389 0.96364 1.16849 0.82401 0.87436 0.84140 1.90890 1.58311 1.68631 1.31252 0.88685 0.95039 0.90597 0.85011 0.90647 0.77884 0.81231 0.85545 0.76883 0.90108 0.94523 0.92866 0.94554 0.92387 0.99301 0.93192 0.92465 0.93016 0.90657 0.92760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.01 10.24 71.98 0.74 -1.28 16 2 C 0.09 1.23 6.05 86.38 0.52 1.75 16 3 N -0.48 -9.82 2.59 -650.12 -1.68 -11.51 16 4 C 0.07 0.92 10.28 83.35 0.86 1.77 16 5 C -0.17 -3.00 10.00 22.06 0.22 -2.78 16 6 C -0.15 -3.85 8.92 22.42 0.20 -3.65 16 7 C 0.07 2.25 6.67 38.22 0.25 2.50 16 8 N -0.73 -24.03 5.25 -318.40 -1.67 -25.70 16 9 C 0.17 5.86 2.15 44.99 0.10 5.95 16 10 C -0.12 -4.59 5.45 30.60 0.17 -4.42 16 11 C -0.10 -4.56 4.98 30.59 0.15 -4.40 16 12 C 0.04 2.18 2.10 -11.54 -0.02 2.16 16 13 C -0.53 -29.42 8.56 25.60 0.22 -29.21 16 14 H 0.05 2.88 7.74 -2.91 -0.02 2.86 16 15 C 0.01 0.62 5.30 84.65 0.45 1.07 16 16 N -0.92 -53.71 11.32 21.44 0.24 -53.47 16 17 Si 0.95 43.79 29.54 68.60 2.03 45.82 16 18 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 19 H -0.29 -13.01 7.11 99.48 0.71 -12.31 16 20 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 21 C -0.10 -3.89 5.14 30.61 0.16 -3.73 16 22 C -0.11 -3.93 5.39 30.61 0.17 -3.77 16 23 C 0.49 14.90 7.43 84.99 0.63 15.54 16 24 O -0.60 -22.28 15.97 -5.56 -0.09 -22.37 16 25 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.13 0.76 8.01 -2.39 -0.02 0.74 16 29 H 0.07 1.43 7.39 -2.39 -0.02 1.41 16 30 H 0.20 0.75 8.04 -2.91 -0.02 0.72 16 31 H 0.17 1.85 8.06 -2.91 -0.02 1.83 16 32 H 0.13 3.38 6.17 -2.91 -0.02 3.36 16 33 H 0.40 13.56 8.06 -92.71 -0.75 12.82 16 34 H 0.08 2.65 6.52 -2.39 -0.02 2.63 16 35 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.05 2.00 7.74 -2.39 -0.02 1.99 16 37 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.06 3.16 6.07 -2.39 -0.01 3.14 16 39 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 40 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 41 H 0.06 2.22 8.14 -2.38 -0.02 2.20 16 42 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 43 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 44 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 Total: -1.00 -70.50 348.21 3.87 -66.63 By element: Atomic # 1 Polarization: 22.85 SS G_CDS: 0.24 Total: 23.09 kcal Atomic # 6 Polarization: -27.30 SS G_CDS: 4.81 Total: -22.49 kcal Atomic # 7 Polarization: -87.56 SS G_CDS: -3.11 Total: -90.68 kcal Atomic # 8 Polarization: -22.28 SS G_CDS: -0.09 Total: -22.37 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -70.50 3.87 -66.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173330489.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.307 kcal (2) G-P(sol) polarization free energy of solvation -70.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.47 seconds