Wall clock time and date at job start Tue Mar 31 2020 08:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.52997 * 109.47164 * 240.00295 * 2 1 3 5 5 C 1.50706 * 109.47267 * 65.00123 * 4 2 1 6 6 O 1.21284 * 119.99693 * 359.97438 * 5 4 2 7 7 N 1.34771 * 120.00154 * 180.02562 * 5 4 2 8 8 C 1.46505 * 120.00007 * 179.97438 * 7 5 4 9 9 C 1.53000 * 109.46975 * 179.97438 * 8 7 5 10 10 C 1.53002 * 109.46776 * 179.97438 * 9 8 7 11 11 N 1.46505 * 109.46902 * 180.02562 * 10 9 8 12 12 C 1.36932 * 119.99777 * 179.97438 * 11 10 9 13 13 H 1.07997 * 120.00663 * 0.02562 * 12 11 10 14 14 C 1.38817 * 119.99677 * 179.97438 * 12 11 10 15 15 N 1.31628 * 119.99908 * 180.02562 * 14 12 11 16 16 Si 1.86799 * 120.00161 * 0.02562 * 14 12 11 17 17 H 1.48497 * 109.46889 * 89.99846 * 16 14 12 18 18 H 1.48504 * 109.47040 * 209.99711 * 16 14 12 19 19 H 1.48493 * 109.47038 * 329.99862 * 16 14 12 20 20 C 1.50698 * 109.47184 * 119.99962 * 2 1 3 21 21 C 1.38245 * 119.99431 * 59.73158 * 20 2 1 22 22 C 1.38237 * 119.99269 * 179.78957 * 21 20 2 23 23 C 1.38234 * 120.00384 * 0.43420 * 22 21 20 24 24 C 1.38233 * 119.99643 * 359.81821 * 23 22 21 25 25 C 1.38228 * 120.00126 * 240.00037 * 20 2 1 26 26 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 28 28 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 29 29 H 1.09000 * 109.47278 * 184.99561 * 4 2 1 30 30 H 1.08994 * 109.47510 * 305.00071 * 4 2 1 31 31 H 0.96994 * 120.00429 * 359.97438 * 7 5 4 32 32 H 1.09000 * 109.47095 * 299.99285 * 8 7 5 33 33 H 1.09004 * 109.47029 * 59.99136 * 8 7 5 34 34 H 1.09000 * 109.47170 * 299.99906 * 9 8 7 35 35 H 1.08998 * 109.47042 * 60.00662 * 9 8 7 36 36 H 1.09000 * 109.47312 * 299.99963 * 10 9 8 37 37 H 1.08994 * 109.47359 * 60.00390 * 10 9 8 38 38 H 0.97002 * 120.00238 * 359.97438 * 11 10 9 39 39 H 0.96993 * 120.00156 * 180.02562 * 15 14 12 40 40 H 1.07995 * 119.99936 * 359.97438 * 21 20 2 41 41 H 1.08000 * 119.99610 * 180.27818 * 22 21 20 42 42 H 1.07998 * 120.00233 * 179.83582 * 23 22 21 43 43 H 1.08009 * 119.99828 * 179.97438 * 24 23 22 44 44 H 1.07992 * 120.00101 * 359.97438 * 25 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.6414 0.0572 -2.4766 6 8 1.0110 1.0871 -2.3632 7 7 1.9845 -0.3917 -3.7002 8 6 1.5965 0.3647 -4.8933 9 6 2.1066 -0.3564 -6.1426 10 6 1.7008 0.4333 -7.3887 11 7 2.1888 -0.2576 -8.5849 12 6 1.9431 0.2662 -9.8260 13 1 1.3900 1.1887 -9.9231 14 6 2.4059 -0.3881 -10.9595 15 7 2.1702 0.1156 -12.1525 16 14 3.3631 -1.9834 -10.7917 17 1 2.4210 -3.1309 -10.8169 18 1 4.3227 -2.1058 -11.9184 19 1 4.1066 -1.9816 -9.5063 20 6 2.0324 -0.7104 1.2304 21 6 1.6938 -2.0323 1.4519 22 6 2.1582 -2.6852 2.5784 23 6 2.9537 -2.0137 3.4879 24 6 3.2879 -0.6904 3.2690 25 6 2.8271 -0.0386 2.1403 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 3.1264 -0.7993 -1.2057 30 1 1.6055 -1.7197 -1.2953 31 1 2.4884 -1.2155 -3.7909 32 1 0.5102 0.4428 -4.9367 33 1 2.0310 1.3634 -4.8477 34 1 3.1930 -0.4342 -6.0991 35 1 1.6723 -1.3551 -6.1884 36 1 0.6144 0.5107 -7.4320 37 1 2.1347 1.4321 -7.3432 38 1 2.6858 -1.0860 -8.4978 39 1 2.4932 -0.3418 -12.9445 40 1 1.0690 -2.5557 0.7434 41 1 1.8974 -3.7192 2.7492 42 1 3.3143 -2.5231 4.3693 43 1 3.9091 -0.1656 3.9798 44 1 3.0883 0.9952 1.9693 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001175317992.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:13:01 Heat of formation + Delta-G solvation = -19.328720 kcal Electronic energy + Delta-G solvation = -21611.022138 eV Core-core repulsion = 18334.746683 eV Total energy + Delta-G solvation = -3276.275455 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.33289 -39.36001 -36.37543 -35.25587 -34.44297 -32.08498 -31.25962 -30.52461 -29.83870 -28.05151 -25.33734 -23.84297 -22.89000 -22.22839 -21.34818 -20.81990 -19.91183 -17.73124 -17.39658 -16.73221 -16.21322 -15.90859 -15.52651 -15.26568 -14.79450 -14.53741 -14.20599 -13.97507 -13.78371 -13.52720 -13.52232 -12.98171 -12.84109 -12.78955 -12.53252 -12.03129 -12.00575 -11.65517 -11.48977 -11.21672 -11.14884 -11.03256 -10.95975 -10.83731 -10.71930 -10.18295 -9.82559 -9.60788 -9.26197 -9.11294 -9.03643 -8.91942 -7.26100 -5.78300 -3.14497 1.00863 1.05867 2.53594 3.06979 3.34924 3.37202 3.43156 3.45601 4.31698 4.39243 4.57023 4.65115 4.65723 4.77858 4.78053 4.84231 4.96343 5.14058 5.16671 5.18561 5.21287 5.32865 5.45075 5.48702 5.52175 5.64325 5.68369 5.75041 5.80982 5.88765 5.90932 5.94721 6.08152 6.12417 6.17378 6.19272 6.33385 6.40407 6.66444 6.66812 6.69974 7.39509 7.97736 8.12828 8.40479 9.19115 9.91185 10.10677 11.40024 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.033329 B = 0.002117 C = 0.002041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.897324 B =13222.651965 C =13713.088856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.036 4.036 3 H 0.087 0.913 4 C -0.134 4.134 5 C 0.511 3.489 6 O -0.538 6.538 7 N -0.730 5.730 8 C 0.122 3.878 9 C -0.142 4.142 10 C 0.160 3.840 11 N -0.757 5.757 12 C -0.246 4.246 13 H 0.091 0.909 14 C 0.003 3.997 15 N -0.934 5.934 16 Si 0.887 3.113 17 H -0.284 1.284 18 H -0.291 1.291 19 H -0.278 1.278 20 C -0.075 4.075 21 C -0.115 4.115 22 C -0.119 4.119 23 C -0.127 4.127 24 C -0.119 4.119 25 C -0.116 4.116 26 H 0.050 0.950 27 H 0.053 0.947 28 H 0.080 0.920 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.400 0.600 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.030 0.970 37 H 0.030 0.970 38 H 0.360 0.640 39 H 0.260 0.740 40 H 0.121 0.879 41 H 0.120 0.880 42 H 0.119 0.881 43 H 0.121 0.879 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.404 -5.738 33.127 33.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.054 4.054 3 H 0.105 0.895 4 C -0.174 4.174 5 C 0.297 3.703 6 O -0.415 6.415 7 N -0.382 5.382 8 C -0.002 4.002 9 C -0.180 4.180 10 C 0.032 3.968 11 N -0.403 5.403 12 C -0.376 4.376 13 H 0.109 0.891 14 C -0.193 4.193 15 N -0.581 5.581 16 Si 0.717 3.283 17 H -0.211 1.211 18 H -0.217 1.217 19 H -0.204 1.204 20 C -0.075 4.075 21 C -0.133 4.133 22 C -0.137 4.137 23 C -0.145 4.145 24 C -0.137 4.137 25 C -0.134 4.134 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.099 0.901 29 H 0.112 0.888 30 H 0.112 0.888 31 H 0.234 0.766 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.048 0.952 37 H 0.048 0.952 38 H 0.193 0.807 39 H 0.070 0.930 40 H 0.139 0.861 41 H 0.138 0.862 42 H 0.137 0.863 43 H 0.139 0.861 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 0.855 -4.819 33.003 33.364 hybrid contribution 1.049 -1.652 -0.094 1.959 sum 1.903 -6.471 32.909 33.593 Atomic orbital electron populations 1.21970 0.93567 1.01741 1.03377 1.19885 0.96846 0.99155 0.89558 0.89491 1.21763 1.03095 1.00215 0.92360 1.20621 0.79296 0.85785 0.84599 1.90682 1.39676 1.24554 1.86616 1.46120 1.57914 1.27955 1.06162 1.21335 1.00478 0.95452 0.82909 1.21993 1.01513 1.00217 0.94263 1.20502 0.97266 0.94571 0.84428 1.42687 1.67501 1.27623 1.02443 1.19075 1.29848 1.06897 0.81751 0.89140 1.24701 1.00788 0.98703 0.95102 1.69706 1.51057 1.40475 0.96902 0.86508 0.80127 0.84760 0.76871 1.21073 1.21691 1.20407 1.19928 0.97156 0.94220 0.96169 1.21034 1.00102 0.94389 0.97784 1.21157 0.98032 0.99888 0.94643 1.21152 0.98911 0.94938 0.99483 1.21158 1.00004 0.94973 0.97565 1.21122 0.97884 0.99997 0.94410 0.93122 0.92747 0.90091 0.88786 0.88787 0.76625 0.91206 0.91228 0.91383 0.91374 0.95170 0.95228 0.80700 0.93031 0.86078 0.86151 0.86274 0.86144 0.86012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 8.74 37.16 0.32 -1.03 16 2 C -0.04 -0.30 2.21 -91.77 -0.20 -0.51 16 3 H 0.09 0.83 7.69 -51.93 -0.40 0.43 16 4 C -0.13 -1.04 4.92 -27.88 -0.14 -1.18 16 5 C 0.51 5.64 7.55 -10.99 -0.08 5.56 16 6 O -0.54 -7.90 13.96 5.55 0.08 -7.82 16 7 N -0.73 -7.50 5.56 -60.29 -0.33 -7.83 16 8 C 0.12 1.53 5.67 -4.04 -0.02 1.51 16 9 C -0.14 -1.97 5.44 -26.73 -0.15 -2.11 16 10 C 0.16 3.02 6.26 -4.04 -0.03 2.99 16 11 N -0.76 -17.96 5.41 -59.91 -0.32 -18.28 16 12 C -0.25 -7.03 10.47 -15.06 -0.16 -7.19 16 13 H 0.09 2.77 8.06 -52.49 -0.42 2.35 16 14 C 0.00 0.08 5.50 -17.43 -0.10 -0.01 16 15 N -0.93 -29.47 13.97 55.49 0.78 -28.69 16 16 Si 0.89 21.99 27.74 -169.99 -4.71 17.27 16 17 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 18 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 19 H -0.28 -6.42 6.52 56.52 0.37 -6.05 16 20 C -0.07 -0.60 4.78 -104.62 -0.50 -1.10 16 21 C -0.12 -0.85 8.76 -39.58 -0.35 -1.19 16 22 C -0.12 -0.82 10.05 -39.58 -0.40 -1.22 16 23 C -0.13 -0.86 10.05 -39.58 -0.40 -1.25 16 24 C -0.12 -0.84 10.05 -39.58 -0.40 -1.23 16 25 C -0.12 -0.90 9.67 -39.59 -0.38 -1.28 16 26 H 0.05 0.40 7.37 -51.93 -0.38 0.02 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.08 0.91 5.95 -51.93 -0.31 0.60 16 29 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.09 0.58 7.59 -51.93 -0.39 0.19 16 31 H 0.40 3.08 8.47 -40.82 -0.35 2.73 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.36 8.22 5.53 -40.82 -0.23 8.00 16 39 H 0.26 7.77 8.31 -40.82 -0.34 7.44 16 40 H 0.12 0.74 7.16 -52.49 -0.38 0.37 16 41 H 0.12 0.61 8.06 -52.49 -0.42 0.18 16 42 H 0.12 0.58 8.06 -52.49 -0.42 0.16 16 43 H 0.12 0.62 8.06 -52.48 -0.42 0.20 16 44 H 0.12 0.81 7.95 -52.49 -0.42 0.40 16 LS Contribution 360.88 15.07 5.44 5.44 Total: -1.00 -33.93 360.88 -9.14 -43.07 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -7.09 Total: 6.10 kcal Atomic # 6 Polarization: -6.29 SS G_CDS: -2.97 Total: -9.26 kcal Atomic # 7 Polarization: -54.92 SS G_CDS: 0.12 Total: -54.81 kcal Atomic # 8 Polarization: -7.90 SS G_CDS: 0.08 Total: -7.82 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.71 Total: 17.27 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.93 -9.14 -43.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175317992.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.745 kcal (2) G-P(sol) polarization free energy of solvation -33.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds