Wall clock time and date at job start Tue Mar 31 2020 08:13:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.52997 * 109.47164 * 240.00295 * 2 1 3 5 5 C 1.50706 * 109.47267 * 65.00123 * 4 2 1 6 6 O 1.21284 * 119.99693 * 359.97438 * 5 4 2 7 7 N 1.34771 * 120.00154 * 180.02562 * 5 4 2 8 8 C 1.46505 * 120.00007 * 179.97438 * 7 5 4 9 9 C 1.53000 * 109.46975 * 179.97438 * 8 7 5 10 10 C 1.53002 * 109.46776 * 179.97438 * 9 8 7 11 11 N 1.46505 * 109.46902 * 180.02562 * 10 9 8 12 12 C 1.36932 * 119.99777 * 179.97438 * 11 10 9 13 13 H 1.07997 * 120.00663 * 0.02562 * 12 11 10 14 14 C 1.38817 * 119.99677 * 179.97438 * 12 11 10 15 15 N 1.31628 * 119.99908 * 180.02562 * 14 12 11 16 16 Si 1.86799 * 120.00161 * 0.02562 * 14 12 11 17 17 H 1.48497 * 109.46889 * 89.99846 * 16 14 12 18 18 H 1.48504 * 109.47040 * 209.99711 * 16 14 12 19 19 H 1.48493 * 109.47038 * 329.99862 * 16 14 12 20 20 C 1.50698 * 109.47184 * 119.99962 * 2 1 3 21 21 C 1.38245 * 119.99431 * 59.73158 * 20 2 1 22 22 C 1.38237 * 119.99269 * 179.78957 * 21 20 2 23 23 C 1.38234 * 120.00384 * 0.43420 * 22 21 20 24 24 C 1.38233 * 119.99643 * 359.81821 * 23 22 21 25 25 C 1.38228 * 120.00126 * 240.00037 * 20 2 1 26 26 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 28 28 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 29 29 H 1.09000 * 109.47278 * 184.99561 * 4 2 1 30 30 H 1.08994 * 109.47510 * 305.00071 * 4 2 1 31 31 H 0.96994 * 120.00429 * 359.97438 * 7 5 4 32 32 H 1.09000 * 109.47095 * 299.99285 * 8 7 5 33 33 H 1.09004 * 109.47029 * 59.99136 * 8 7 5 34 34 H 1.09000 * 109.47170 * 299.99906 * 9 8 7 35 35 H 1.08998 * 109.47042 * 60.00662 * 9 8 7 36 36 H 1.09000 * 109.47312 * 299.99963 * 10 9 8 37 37 H 1.08994 * 109.47359 * 60.00390 * 10 9 8 38 38 H 0.97002 * 120.00238 * 359.97438 * 11 10 9 39 39 H 0.96993 * 120.00156 * 180.02562 * 15 14 12 40 40 H 1.07995 * 119.99936 * 359.97438 * 21 20 2 41 41 H 1.08000 * 119.99610 * 180.27818 * 22 21 20 42 42 H 1.07998 * 120.00233 * 179.83582 * 23 22 21 43 43 H 1.08009 * 119.99828 * 179.97438 * 24 23 22 44 44 H 1.07992 * 120.00101 * 359.97438 * 25 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.6414 0.0572 -2.4766 6 8 1.0110 1.0871 -2.3632 7 7 1.9845 -0.3917 -3.7002 8 6 1.5965 0.3647 -4.8933 9 6 2.1066 -0.3564 -6.1426 10 6 1.7008 0.4333 -7.3887 11 7 2.1888 -0.2576 -8.5849 12 6 1.9431 0.2662 -9.8260 13 1 1.3900 1.1887 -9.9231 14 6 2.4059 -0.3881 -10.9595 15 7 2.1702 0.1156 -12.1525 16 14 3.3631 -1.9834 -10.7917 17 1 2.4210 -3.1309 -10.8169 18 1 4.3227 -2.1058 -11.9184 19 1 4.1066 -1.9816 -9.5063 20 6 2.0324 -0.7104 1.2304 21 6 1.6938 -2.0323 1.4519 22 6 2.1582 -2.6852 2.5784 23 6 2.9537 -2.0137 3.4879 24 6 3.2879 -0.6904 3.2690 25 6 2.8271 -0.0386 2.1403 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 3.1264 -0.7993 -1.2057 30 1 1.6055 -1.7197 -1.2953 31 1 2.4884 -1.2155 -3.7909 32 1 0.5102 0.4428 -4.9367 33 1 2.0310 1.3634 -4.8477 34 1 3.1930 -0.4342 -6.0991 35 1 1.6723 -1.3551 -6.1884 36 1 0.6144 0.5107 -7.4320 37 1 2.1347 1.4321 -7.3432 38 1 2.6858 -1.0860 -8.4978 39 1 2.4932 -0.3418 -12.9445 40 1 1.0690 -2.5557 0.7434 41 1 1.8974 -3.7192 2.7492 42 1 3.3143 -2.5231 4.3693 43 1 3.9091 -0.1656 3.9798 44 1 3.0883 0.9952 1.9693 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001175317992.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:13:00 Heat of formation + Delta-G solvation = -41.119890 kcal Electronic energy + Delta-G solvation = -21611.967074 eV Core-core repulsion = 18334.746683 eV Total energy + Delta-G solvation = -3277.220391 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -41.09695 -40.01918 -37.69592 -36.22307 -35.66833 -33.88795 -31.95029 -31.74284 -30.62499 -28.91999 -26.80136 -24.64362 -23.84890 -23.35258 -22.68221 -21.68194 -20.67692 -19.63805 -18.23264 -17.39909 -17.16861 -16.92095 -16.49937 -16.18958 -15.94473 -15.69394 -15.52761 -14.91531 -14.79527 -14.51594 -14.46134 -14.14126 -13.87804 -13.77783 -13.63970 -13.25410 -12.90364 -12.71678 -12.54263 -12.50359 -12.20122 -12.13157 -12.07066 -12.00481 -11.81253 -11.72872 -11.54146 -10.98497 -10.75058 -10.05121 -9.76958 -9.57165 -9.32540 -8.03750 -5.38917 0.48678 0.55069 1.38075 1.43556 1.50933 1.68567 2.21319 2.48765 2.93165 3.27167 3.55592 3.65270 3.79537 4.04482 4.08291 4.13737 4.21231 4.23698 4.24651 4.33406 4.36054 4.53348 4.66054 4.66598 4.70672 4.71951 4.72605 4.86817 4.88885 5.03718 5.17185 5.20025 5.25080 5.26375 5.28685 5.36241 5.51249 5.64526 5.68491 5.73872 5.78940 6.17183 6.19735 6.60271 7.06533 7.30974 7.81051 8.02122 9.17662 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.033329 B = 0.002117 C = 0.002041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.897324 B =13222.651965 C =13713.088856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.032 4.032 3 H 0.069 0.931 4 C -0.125 4.125 5 C 0.508 3.492 6 O -0.579 6.579 7 N -0.720 5.720 8 C 0.131 3.869 9 C -0.122 4.122 10 C 0.153 3.847 11 N -0.758 5.758 12 C -0.243 4.243 13 H 0.052 0.948 14 C -0.069 4.069 15 N -0.985 5.985 16 Si 0.964 3.036 17 H -0.276 1.276 18 H -0.296 1.296 19 H -0.246 1.246 20 C -0.083 4.083 21 C -0.122 4.122 22 C -0.126 4.126 23 C -0.133 4.133 24 C -0.128 4.128 25 C -0.132 4.132 26 H 0.063 0.937 27 H 0.050 0.950 28 H 0.056 0.944 29 H 0.112 0.888 30 H 0.118 0.882 31 H 0.416 0.584 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.025 0.975 37 H 0.023 0.977 38 H 0.369 0.631 39 H 0.259 0.741 40 H 0.134 0.866 41 H 0.139 0.861 42 H 0.137 0.863 43 H 0.135 0.865 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.760 -8.598 35.510 36.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.051 4.051 3 H 0.088 0.912 4 C -0.164 4.164 5 C 0.296 3.704 6 O -0.460 6.460 7 N -0.372 5.372 8 C 0.006 3.994 9 C -0.160 4.160 10 C 0.026 3.974 11 N -0.404 5.404 12 C -0.374 4.374 13 H 0.070 0.930 14 C -0.260 4.260 15 N -0.635 5.635 16 Si 0.790 3.210 17 H -0.202 1.202 18 H -0.223 1.223 19 H -0.170 1.170 20 C -0.083 4.083 21 C -0.140 4.140 22 C -0.144 4.144 23 C -0.151 4.151 24 C -0.145 4.145 25 C -0.150 4.150 26 H 0.082 0.918 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.130 0.870 30 H 0.136 0.864 31 H 0.253 0.747 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.099 0.901 35 H 0.101 0.899 36 H 0.043 0.957 37 H 0.041 0.959 38 H 0.203 0.797 39 H 0.067 0.933 40 H 0.152 0.848 41 H 0.157 0.843 42 H 0.155 0.845 43 H 0.153 0.847 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 2.223 -7.701 35.446 36.341 hybrid contribution 0.553 -0.648 -0.787 1.160 sum 2.776 -8.349 34.659 35.758 Atomic orbital electron populations 1.21905 0.94227 1.02142 1.01978 1.19782 0.96242 0.98536 0.90492 0.91241 1.21762 1.04243 1.00443 0.89971 1.21216 0.78354 0.85377 0.85453 1.90678 1.41556 1.26538 1.87182 1.45965 1.57749 1.28275 1.05228 1.21052 0.99757 0.95147 0.83427 1.21758 1.02334 0.99953 0.91938 1.20670 0.96778 0.94880 0.85039 1.42650 1.67663 1.28074 1.02030 1.19050 1.28630 1.05591 0.84106 0.92966 1.25651 1.02593 1.03244 0.94505 1.69909 1.52952 1.42677 0.97954 0.85283 0.78489 0.79266 0.77966 1.20161 1.22289 1.16992 1.19878 0.97766 0.94657 0.95988 1.21218 1.00243 0.94128 0.98364 1.21449 0.97714 1.00844 0.94369 1.21460 0.98626 0.94926 1.00114 1.21404 1.00134 0.95408 0.97601 1.21290 0.98366 1.00380 0.94943 0.91763 0.93040 0.92526 0.87003 0.86414 0.74706 0.92203 0.92358 0.90075 0.89880 0.95733 0.95884 0.79746 0.93255 0.84836 0.84333 0.84473 0.84704 0.85838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 8.74 71.98 0.63 -1.94 16 2 C -0.03 -0.51 2.21 -11.54 -0.03 -0.53 16 3 H 0.07 1.34 7.69 -2.39 -0.02 1.33 16 4 C -0.12 -1.65 4.92 29.85 0.15 -1.50 16 5 C 0.51 10.49 7.55 87.66 0.66 11.15 16 6 O -0.58 -17.04 13.96 -3.04 -0.04 -17.09 16 7 N -0.72 -13.09 5.56 -463.04 -2.57 -15.66 16 8 C 0.13 3.09 5.67 86.38 0.49 3.58 16 9 C -0.12 -3.07 5.44 30.60 0.17 -2.90 16 10 C 0.15 5.64 6.26 86.38 0.54 6.18 16 11 N -0.76 -35.01 5.41 -343.45 -1.86 -36.87 16 12 C -0.24 -14.06 10.47 84.04 0.88 -13.18 16 13 H 0.05 3.34 8.06 -2.91 -0.02 3.32 16 14 C -0.07 -4.07 5.50 84.86 0.47 -3.60 16 15 N -0.98 -63.61 13.97 21.65 0.30 -63.31 16 16 Si 0.96 44.64 27.74 68.60 1.90 46.54 16 17 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 18 H -0.30 -13.93 7.11 99.48 0.71 -13.23 16 19 H -0.25 -9.97 6.52 99.48 0.65 -9.33 16 20 C -0.08 -1.20 4.78 -19.87 -0.09 -1.30 16 21 C -0.12 -1.51 8.76 22.27 0.20 -1.31 16 22 C -0.13 -1.41 10.05 22.27 0.22 -1.19 16 23 C -0.13 -1.50 10.05 22.27 0.22 -1.28 16 24 C -0.13 -1.59 10.05 22.27 0.22 -1.36 16 25 C -0.13 -1.91 9.67 22.27 0.22 -1.69 16 26 H 0.06 0.92 7.37 -2.39 -0.02 0.91 16 27 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.06 1.30 5.95 -2.39 -0.01 1.28 16 29 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.12 1.04 7.59 -2.39 -0.02 1.02 16 31 H 0.42 4.91 8.47 -92.71 -0.79 4.12 16 32 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.06 1.52 8.14 -2.39 -0.02 1.51 16 34 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.37 15.70 5.53 -92.71 -0.51 15.19 16 39 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16 40 H 0.13 1.24 7.16 -2.91 -0.02 1.22 16 41 H 0.14 0.98 8.06 -2.91 -0.02 0.95 16 42 H 0.14 0.97 8.06 -2.91 -0.02 0.95 16 43 H 0.14 1.17 8.06 -2.91 -0.02 1.15 16 44 H 0.12 1.62 7.95 -2.91 -0.02 1.60 16 Total: -1.00 -75.11 360.88 2.31 -72.80 By element: Atomic # 1 Polarization: 24.83 SS G_CDS: -0.37 Total: 24.46 kcal Atomic # 6 Polarization: -15.82 SS G_CDS: 4.94 Total: -10.88 kcal Atomic # 7 Polarization: -111.71 SS G_CDS: -4.13 Total: -115.84 kcal Atomic # 8 Polarization: -17.04 SS G_CDS: -0.04 Total: -17.09 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 1.90 Total: 46.54 kcal Total: -75.11 2.31 -72.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175317992.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.685 kcal (2) G-P(sol) polarization free energy of solvation -75.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds