Wall clock time and date at job start Tue Mar 31 2020 07:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 110.28998 * 2 1 4 4 C 1.54385 * 110.32749 * 122.24121 * 2 1 3 5 5 N 1.48564 * 104.59324 * 142.74600 * 4 2 1 6 6 C 1.46904 * 110.99652 * 200.95881 * 5 4 2 7 7 C 1.50694 * 109.47220 * 290.13179 * 6 5 4 8 8 C 1.38312 * 119.92734 * 269.72780 * 7 6 5 9 9 C 1.38102 * 120.06659 * 179.72988 * 8 7 6 10 10 C 1.38874 * 119.93233 * 0.53836 * 9 8 7 11 11 O 1.35746 * 120.07198 * 179.75001 * 10 9 8 12 12 C 1.34829 * 117.00512 * 174.44153 * 11 10 9 13 13 H 1.08003 * 119.99410 * 5.06577 * 12 11 10 14 14 C 1.38653 * 120.00474 * 185.06093 * 12 11 10 15 15 N 1.31554 * 119.99707 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99859 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47245 * 90.00209 * 16 14 12 18 18 H 1.48504 * 109.46764 * 209.99374 * 16 14 12 19 19 H 1.48494 * 109.47271 * 329.99787 * 16 14 12 20 20 C 1.38887 * 119.86286 * 359.73280 * 10 9 8 21 21 C 1.38103 * 119.92799 * 359.97438 * 20 10 9 22 22 C 1.48559 * 104.22428 * 320.51462 * 5 4 2 23 23 C 1.54266 * 110.32204 * 237.87528 * 2 1 3 24 24 H 1.09005 * 110.32066 * 122.10312 * 23 2 1 25 25 C 1.52999 * 110.32566 * 0.02562 * 23 2 1 26 26 N 1.46890 * 109.47599 * 174.99779 * 25 23 2 27 27 H 1.09000 * 109.46974 * 182.12486 * 1 2 3 28 28 H 1.09000 * 109.46541 * 302.12443 * 1 2 3 29 29 H 1.08993 * 109.46908 * 62.12207 * 1 2 3 30 30 H 1.08999 * 110.40678 * 261.52570 * 4 2 1 31 31 H 1.08997 * 110.40582 * 23.97042 * 4 2 1 32 32 H 1.09001 * 109.46975 * 50.12773 * 6 5 4 33 33 H 1.08998 * 109.47079 * 170.12882 * 6 5 4 34 34 H 1.07998 * 119.96144 * 359.97438 * 8 7 6 35 35 H 1.08001 * 120.02981 * 180.27243 * 9 8 7 36 36 H 0.97004 * 119.99636 * 180.02562 * 15 14 12 37 37 H 1.07993 * 120.03450 * 180.02562 * 20 10 9 38 38 H 1.07996 * 119.96186 * 179.97438 * 21 20 10 39 39 H 1.08998 * 110.41145 * 280.70947 * 22 5 4 40 40 H 1.08998 * 110.40982 * 158.26222 * 22 5 4 41 41 H 1.08998 * 109.47150 * 54.99262 * 25 23 2 42 42 H 1.09002 * 109.46775 * 295.00228 * 25 23 2 43 43 H 1.00904 * 111.00185 * 56.04239 * 26 25 23 44 44 H 1.00895 * 111.00326 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0224 0.0000 4 6 2.0663 -0.7723 1.2245 5 7 3.2694 -1.4836 0.7208 6 6 3.6070 -2.6234 1.5840 7 6 4.1191 -2.1167 2.9076 8 6 5.4719 -1.8874 3.0820 9 6 5.9437 -1.4179 4.2920 10 6 5.0597 -1.1865 5.3378 11 8 5.5211 -0.7297 6.5300 12 6 4.6000 -0.4169 7.4637 13 1 3.5541 -0.6108 7.2766 14 6 4.9955 0.1535 8.6639 15 7 6.2694 0.3900 8.8916 16 14 3.7194 0.5862 9.9577 17 1 3.5177 -0.5746 10.8617 18 1 4.1906 1.7523 10.7472 19 1 2.4355 0.9247 9.2928 20 6 3.7026 -1.4230 5.1613 21 6 3.2362 -1.8869 3.9470 22 6 2.8806 -1.9416 -0.6379 23 6 2.0658 -0.7693 -1.2251 24 1 2.7067 -0.1244 -1.8265 25 6 0.9049 -1.2987 -2.0695 26 7 1.4321 -1.9227 -3.2904 27 1 -0.3633 -1.0270 0.0381 28 1 -0.3632 0.5465 0.8704 29 1 -0.3633 0.4805 -0.9084 30 1 2.3395 -0.0799 2.0207 31 1 1.3230 -1.4865 1.5788 32 1 2.7171 -3.2314 1.7475 33 1 4.3766 -3.2275 1.1038 34 1 6.1594 -2.0721 2.2699 35 1 6.9996 -1.2348 4.4262 36 1 6.5461 0.7887 9.7315 37 1 3.0127 -1.2437 5.9726 38 1 2.1811 -2.0714 3.8093 39 1 2.2648 -2.8387 -0.5749 40 1 3.7670 -2.1296 -1.2437 41 1 0.2456 -0.4736 -2.3388 42 1 0.3460 -2.0380 -1.4958 43 1 2.0961 -2.6490 -3.0675 44 1 0.6843 -2.2809 -3.8653 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205136087.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:16 Heat of formation + Delta-G solvation = -1.645535 kcal Electronic energy + Delta-G solvation = -22843.947327 eV Core-core repulsion = 19568.438673 eV Total energy + Delta-G solvation = -3275.508654 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.86137 -38.87085 -36.75683 -35.01790 -33.11286 -32.24907 -30.32438 -30.07147 -28.75000 -26.58784 -25.47927 -24.67248 -23.36915 -21.95879 -21.24672 -20.26839 -19.07882 -17.94948 -16.90499 -16.63790 -16.16473 -15.29716 -15.06173 -14.79036 -14.52328 -14.24992 -14.12871 -13.90309 -13.55634 -13.44458 -12.86617 -12.79800 -12.62244 -12.50518 -12.35209 -12.05659 -11.78830 -11.66181 -11.35469 -11.16119 -10.80755 -10.76213 -10.67158 -10.61219 -10.53152 -10.46432 -10.38532 -9.31167 -9.00343 -8.82649 -8.40211 -8.13618 -7.14970 -6.43850 -4.02640 2.25321 2.31193 3.12673 3.13776 3.18617 3.97220 4.04428 4.19506 4.41008 4.60907 4.65060 4.83355 5.02284 5.10390 5.13008 5.22020 5.27233 5.30986 5.34718 5.38357 5.44807 5.48440 5.57586 5.68609 5.72581 5.79278 5.81547 5.90857 5.97020 6.01170 6.16774 6.22688 6.24717 6.44606 6.73102 6.78051 6.89237 6.92574 7.06692 7.10092 7.12593 7.29381 7.42495 7.46608 7.85769 8.01327 9.01869 9.72781 10.74309 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.027381 B = 0.003087 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.357681 B = 9069.014860 C = 9768.899775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.093 4.093 3 H 0.081 0.919 4 C 0.041 3.959 5 N -0.502 5.502 6 C 0.103 3.897 7 C -0.178 4.178 8 C -0.053 4.053 9 C -0.194 4.194 10 C 0.156 3.844 11 O -0.179 6.179 12 C -0.391 4.391 13 H 0.091 0.909 14 C 0.039 3.961 15 N -0.863 5.863 16 Si 0.940 3.060 17 H -0.273 1.273 18 H -0.277 1.277 19 H -0.268 1.268 20 C -0.234 4.234 21 C -0.065 4.065 22 C 0.035 3.965 23 C -0.087 4.087 24 H 0.087 0.913 25 C 0.067 3.933 26 N -0.853 5.853 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.085 0.915 31 H 0.041 0.959 32 H 0.032 0.968 33 H 0.073 0.927 34 H 0.111 0.889 35 H 0.116 0.884 36 H 0.270 0.730 37 H 0.125 0.875 38 H 0.100 0.900 39 H 0.035 0.965 40 H 0.079 0.921 41 H 0.076 0.924 42 H 0.027 0.973 43 H 0.340 0.660 44 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.085 -4.455 -18.584 22.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.112 4.112 3 H 0.099 0.901 4 C -0.087 4.087 5 N -0.225 5.225 6 C -0.024 4.024 7 C -0.179 4.179 8 C -0.072 4.072 9 C -0.213 4.213 10 C 0.102 3.898 11 O -0.082 6.082 12 C -0.468 4.468 13 H 0.109 0.891 14 C -0.165 4.165 15 N -0.498 5.498 16 Si 0.765 3.235 17 H -0.199 1.199 18 H -0.202 1.202 19 H -0.192 1.192 20 C -0.254 4.254 21 C -0.083 4.083 22 C -0.093 4.093 23 C -0.107 4.107 24 H 0.105 0.895 25 C -0.063 4.063 26 N -0.382 5.382 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.103 0.897 31 H 0.059 0.941 32 H 0.050 0.950 33 H 0.091 0.909 34 H 0.129 0.871 35 H 0.134 0.866 36 H 0.080 0.920 37 H 0.143 0.857 38 H 0.119 0.881 39 H 0.053 0.947 40 H 0.098 0.902 41 H 0.095 0.905 42 H 0.045 0.955 43 H 0.152 0.848 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -9.946 -3.255 -18.466 21.225 hybrid contribution -1.827 -1.240 1.164 2.496 sum -11.773 -4.495 -17.302 21.405 Atomic orbital electron populations 1.21950 0.95067 1.01663 1.01840 1.21915 0.95221 1.00036 0.94073 0.90050 1.23189 0.90846 0.97473 0.97201 1.65473 1.32816 1.23017 1.01229 1.20941 0.98869 0.91018 0.91543 1.19027 0.93747 1.10687 0.94445 1.20453 0.94389 0.96852 0.95495 1.20214 0.99102 1.09489 0.92508 1.19392 0.91903 0.91782 0.86731 1.83978 1.35243 1.70893 1.18081 1.21312 0.89086 1.41665 0.94702 0.89146 1.25281 0.97254 0.96312 0.97683 1.70040 1.14641 1.40236 1.24885 0.85723 0.79494 0.78434 0.79840 1.19913 1.20243 1.19224 1.21108 0.95847 1.09699 0.98704 1.20560 0.97596 0.97502 0.92683 1.23176 0.98646 0.95841 0.91678 1.21956 0.96217 0.96901 0.95588 0.89467 1.22039 0.96173 0.98234 0.89891 1.58752 1.20568 1.38950 1.19959 0.92741 0.92458 0.92256 0.89655 0.94118 0.94989 0.90858 0.87105 0.86579 0.92041 0.85710 0.88143 0.94663 0.90247 0.90525 0.95516 0.84802 0.84901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 7.93 37.16 0.29 -0.95 16 2 C -0.09 -0.95 3.65 -89.23 -0.33 -1.28 16 3 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 4 C 0.04 0.52 5.02 -2.18 -0.01 0.50 16 5 N -0.50 -6.64 5.36 -231.41 -1.24 -7.88 16 6 C 0.10 1.44 4.96 -4.98 -0.02 1.41 16 7 C -0.18 -3.07 5.10 -104.58 -0.53 -3.61 16 8 C -0.05 -0.97 9.69 -39.60 -0.38 -1.36 16 9 C -0.19 -4.18 9.99 -39.40 -0.39 -4.57 16 10 C 0.16 3.81 6.65 -39.11 -0.26 3.55 16 11 O -0.18 -5.15 9.76 0.07 0.00 -5.15 16 12 C -0.39 -11.02 9.49 30.89 0.29 -10.73 16 13 H 0.09 2.36 5.20 -52.48 -0.27 2.08 16 14 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 15 N -0.86 -25.50 13.67 55.48 0.76 -24.74 16 16 Si 0.94 20.62 29.55 -169.99 -5.02 15.60 16 17 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 18 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 19 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 20 C -0.23 -5.13 9.17 -39.39 -0.36 -5.49 16 21 C -0.06 -1.19 8.72 -39.61 -0.35 -1.53 16 22 C 0.03 0.36 5.32 -2.18 -0.01 0.35 16 23 C -0.09 -0.84 3.29 -89.23 -0.29 -1.13 16 24 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 25 C 0.07 0.53 4.99 -3.83 -0.02 0.52 16 26 N -0.85 -6.26 9.62 -10.37 -0.10 -6.36 16 27 H 0.05 0.45 6.89 -51.93 -0.36 0.09 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.44 6.67 -51.93 -0.35 0.09 16 30 H 0.09 1.26 7.81 -51.93 -0.41 0.85 16 31 H 0.04 0.50 7.51 -51.93 -0.39 0.11 16 32 H 0.03 0.42 7.82 -51.93 -0.41 0.02 16 33 H 0.07 0.94 8.07 -51.93 -0.42 0.52 16 34 H 0.11 1.76 8.06 -52.49 -0.42 1.33 16 35 H 0.12 2.43 8.06 -52.49 -0.42 2.00 16 36 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 37 H 0.13 2.74 5.64 -52.49 -0.30 2.44 16 38 H 0.10 1.61 8.05 -52.49 -0.42 1.19 16 39 H 0.04 0.35 7.61 -51.93 -0.39 -0.05 16 40 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.08 0.60 6.48 -51.93 -0.34 0.26 16 42 H 0.03 0.21 6.93 -51.93 -0.36 -0.15 16 43 H 0.34 2.30 8.31 -39.29 -0.33 1.97 16 44 H 0.34 1.92 9.08 -39.29 -0.36 1.56 16 LS Contribution 347.83 15.07 5.24 5.24 Total: -1.00 -30.56 347.83 -9.60 -40.16 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -6.76 Total: 6.47 kcal Atomic # 6 Polarization: -20.87 SS G_CDS: -2.47 Total: -23.34 kcal Atomic # 7 Polarization: -38.40 SS G_CDS: -0.58 Total: -38.98 kcal Atomic # 8 Polarization: -5.15 SS G_CDS: 0.00 Total: -5.15 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.56 -9.60 -40.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205136087.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.514 kcal (2) G-P(sol) polarization free energy of solvation -30.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds