Wall clock time and date at job start Tue Mar 31 2020 07:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 110.28998 * 2 1 4 4 C 1.54385 * 110.32749 * 122.24121 * 2 1 3 5 5 N 1.48564 * 104.59324 * 142.74600 * 4 2 1 6 6 C 1.46904 * 110.99652 * 200.95881 * 5 4 2 7 7 C 1.50694 * 109.47220 * 290.13179 * 6 5 4 8 8 C 1.38312 * 119.92734 * 269.72780 * 7 6 5 9 9 C 1.38102 * 120.06659 * 179.72988 * 8 7 6 10 10 C 1.38874 * 119.93233 * 0.53836 * 9 8 7 11 11 O 1.35746 * 120.07198 * 179.75001 * 10 9 8 12 12 C 1.34829 * 117.00512 * 174.44153 * 11 10 9 13 13 H 1.08003 * 119.99410 * 5.06577 * 12 11 10 14 14 C 1.38653 * 120.00474 * 185.06093 * 12 11 10 15 15 N 1.31554 * 119.99707 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99859 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47245 * 90.00209 * 16 14 12 18 18 H 1.48504 * 109.46764 * 209.99374 * 16 14 12 19 19 H 1.48494 * 109.47271 * 329.99787 * 16 14 12 20 20 C 1.38887 * 119.86286 * 359.73280 * 10 9 8 21 21 C 1.38103 * 119.92799 * 359.97438 * 20 10 9 22 22 C 1.48559 * 104.22428 * 320.51462 * 5 4 2 23 23 C 1.54266 * 110.32204 * 237.87528 * 2 1 3 24 24 H 1.09005 * 110.32066 * 122.10312 * 23 2 1 25 25 C 1.52999 * 110.32566 * 0.02562 * 23 2 1 26 26 N 1.46890 * 109.47599 * 174.99779 * 25 23 2 27 27 H 1.09000 * 109.46974 * 182.12486 * 1 2 3 28 28 H 1.09000 * 109.46541 * 302.12443 * 1 2 3 29 29 H 1.08993 * 109.46908 * 62.12207 * 1 2 3 30 30 H 1.08999 * 110.40678 * 261.52570 * 4 2 1 31 31 H 1.08997 * 110.40582 * 23.97042 * 4 2 1 32 32 H 1.09001 * 109.46975 * 50.12773 * 6 5 4 33 33 H 1.08998 * 109.47079 * 170.12882 * 6 5 4 34 34 H 1.07998 * 119.96144 * 359.97438 * 8 7 6 35 35 H 1.08001 * 120.02981 * 180.27243 * 9 8 7 36 36 H 0.97004 * 119.99636 * 180.02562 * 15 14 12 37 37 H 1.07993 * 120.03450 * 180.02562 * 20 10 9 38 38 H 1.07996 * 119.96186 * 179.97438 * 21 20 10 39 39 H 1.08998 * 110.41145 * 280.70947 * 22 5 4 40 40 H 1.08998 * 110.40982 * 158.26222 * 22 5 4 41 41 H 1.08998 * 109.47150 * 54.99262 * 25 23 2 42 42 H 1.09002 * 109.46775 * 295.00228 * 25 23 2 43 43 H 1.00904 * 111.00185 * 56.04239 * 26 25 23 44 44 H 1.00895 * 111.00326 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0224 0.0000 4 6 2.0663 -0.7723 1.2245 5 7 3.2694 -1.4836 0.7208 6 6 3.6070 -2.6234 1.5840 7 6 4.1191 -2.1167 2.9076 8 6 5.4719 -1.8874 3.0820 9 6 5.9437 -1.4179 4.2920 10 6 5.0597 -1.1865 5.3378 11 8 5.5211 -0.7297 6.5300 12 6 4.6000 -0.4169 7.4637 13 1 3.5541 -0.6108 7.2766 14 6 4.9955 0.1535 8.6639 15 7 6.2694 0.3900 8.8916 16 14 3.7194 0.5862 9.9577 17 1 3.5177 -0.5746 10.8617 18 1 4.1906 1.7523 10.7472 19 1 2.4355 0.9247 9.2928 20 6 3.7026 -1.4230 5.1613 21 6 3.2362 -1.8869 3.9470 22 6 2.8806 -1.9416 -0.6379 23 6 2.0658 -0.7693 -1.2251 24 1 2.7067 -0.1244 -1.8265 25 6 0.9049 -1.2987 -2.0695 26 7 1.4321 -1.9227 -3.2904 27 1 -0.3633 -1.0270 0.0381 28 1 -0.3632 0.5465 0.8704 29 1 -0.3633 0.4805 -0.9084 30 1 2.3395 -0.0799 2.0207 31 1 1.3230 -1.4865 1.5788 32 1 2.7171 -3.2314 1.7475 33 1 4.3766 -3.2275 1.1038 34 1 6.1594 -2.0721 2.2699 35 1 6.9996 -1.2348 4.4262 36 1 6.5461 0.7887 9.7315 37 1 3.0127 -1.2437 5.9726 38 1 2.1811 -2.0714 3.8093 39 1 2.2648 -2.8387 -0.5749 40 1 3.7670 -2.1296 -1.2437 41 1 0.2456 -0.4736 -2.3388 42 1 0.3460 -2.0380 -1.4958 43 1 2.0961 -2.6490 -3.0675 44 1 0.6843 -2.2809 -3.8653 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205136087.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:16 Heat of formation + Delta-G solvation = -23.388613 kcal Electronic energy + Delta-G solvation = -22844.890177 eV Core-core repulsion = 19568.438673 eV Total energy + Delta-G solvation = -3276.451505 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.01495 -40.37900 -38.38255 -35.96522 -34.35444 -33.82396 -31.83607 -31.46144 -29.72345 -27.84602 -27.17162 -25.64808 -24.35913 -23.61465 -22.34348 -21.69618 -19.94455 -19.75790 -18.78904 -17.46125 -16.86891 -16.54928 -16.42809 -16.16335 -15.94816 -15.50471 -15.37303 -15.26149 -14.88419 -14.71103 -14.38110 -14.15131 -13.71063 -13.52501 -13.43880 -13.16517 -13.06641 -12.96203 -12.66355 -12.57124 -12.27743 -12.14134 -12.08330 -11.90108 -11.55207 -11.40614 -11.33382 -11.15939 -10.79592 -9.77451 -9.54383 -9.41093 -8.89378 -8.47481 -6.15700 0.60293 0.67860 1.34019 1.43442 1.51814 2.17248 2.75646 3.05897 3.33252 3.52364 3.54469 3.62094 3.83533 3.98313 4.03632 4.14856 4.23201 4.25448 4.38151 4.46973 4.49613 4.59350 4.60388 4.64402 4.70325 4.75744 4.78873 4.82352 4.86433 4.98371 5.08437 5.14213 5.23675 5.27914 5.30403 5.31013 5.44547 5.57538 5.71052 5.78185 5.98174 6.02828 6.10071 6.24226 6.28844 6.62886 6.97179 7.78593 8.75948 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.027381 B = 0.003087 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.357681 B = 9069.014860 C = 9768.899775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.091 4.091 3 H 0.070 0.930 4 C 0.039 3.961 5 N -0.520 5.520 6 C 0.106 3.894 7 C -0.153 4.153 8 C -0.049 4.049 9 C -0.206 4.206 10 C 0.114 3.886 11 O -0.233 6.233 12 C -0.413 4.413 13 H 0.101 0.899 14 C -0.024 4.024 15 N -0.921 5.921 16 Si 1.019 2.981 17 H -0.262 1.262 18 H -0.271 1.271 19 H -0.253 1.253 20 C -0.242 4.242 21 C -0.061 4.061 22 C 0.040 3.960 23 C -0.082 4.082 24 H 0.075 0.925 25 C 0.074 3.926 26 N -0.860 5.860 27 H 0.061 0.939 28 H 0.053 0.947 29 H 0.072 0.928 30 H 0.057 0.943 31 H 0.048 0.952 32 H 0.048 0.952 33 H 0.092 0.908 34 H 0.144 0.856 35 H 0.112 0.888 36 H 0.273 0.727 37 H 0.117 0.883 38 H 0.132 0.868 39 H 0.049 0.951 40 H 0.084 0.916 41 H 0.080 0.920 42 H 0.032 0.968 43 H 0.343 0.657 44 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.665 -5.654 -21.205 25.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.110 4.110 3 H 0.089 0.911 4 C -0.089 4.089 5 N -0.244 5.244 6 C -0.021 4.021 7 C -0.154 4.154 8 C -0.067 4.067 9 C -0.225 4.225 10 C 0.064 3.936 11 O -0.140 6.140 12 C -0.489 4.489 13 H 0.118 0.882 14 C -0.221 4.221 15 N -0.560 5.560 16 Si 0.838 3.162 17 H -0.187 1.187 18 H -0.196 1.196 19 H -0.177 1.177 20 C -0.261 4.261 21 C -0.079 4.079 22 C -0.088 4.088 23 C -0.101 4.101 24 H 0.094 0.906 25 C -0.057 4.057 26 N -0.391 5.391 27 H 0.080 0.920 28 H 0.072 0.928 29 H 0.090 0.910 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.110 0.890 34 H 0.162 0.838 35 H 0.130 0.870 36 H 0.082 0.918 37 H 0.135 0.865 38 H 0.149 0.851 39 H 0.067 0.933 40 H 0.103 0.897 41 H 0.098 0.902 42 H 0.050 0.950 43 H 0.156 0.844 44 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -12.549 -4.483 -21.157 25.004 hybrid contribution -1.045 -0.979 1.605 2.151 sum -13.594 -5.462 -19.552 24.432 Atomic orbital electron populations 1.21913 0.93472 1.02223 1.02394 1.21875 0.96515 0.99208 0.93428 0.91145 1.23163 0.90914 0.97330 0.97449 1.65386 1.33622 1.22966 1.02400 1.20956 1.00094 0.91446 0.89645 1.19552 0.93112 1.06884 0.95808 1.20836 0.95688 0.95394 0.94832 1.20460 0.98859 1.09929 0.93238 1.19922 0.93732 0.93407 0.86565 1.83941 1.36427 1.73758 1.19865 1.21809 0.89696 1.42120 0.95320 0.88206 1.26600 0.99719 0.95880 0.99900 1.70189 1.17208 1.42591 1.25987 0.84588 0.76719 0.78456 0.76451 1.18722 1.19558 1.17678 1.21203 0.94726 1.10134 1.00058 1.20872 0.99438 0.96188 0.91409 1.23192 0.99238 0.96479 0.89884 1.21885 0.96581 0.96375 0.95254 0.90613 1.21937 0.95335 0.98488 0.89905 1.58728 1.21207 1.39375 1.19826 0.92046 0.92804 0.90956 0.92422 0.93363 0.93372 0.89001 0.83823 0.87032 0.91841 0.86497 0.85053 0.93310 0.89717 0.90211 0.94967 0.84375 0.83727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 7.93 71.98 0.57 -1.45 16 2 C -0.09 -1.66 3.65 -9.89 -0.04 -1.70 16 3 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 4 C 0.04 0.90 5.02 86.45 0.43 1.33 16 5 N -0.52 -12.07 5.36 -886.04 -4.75 -16.82 16 6 C 0.11 2.51 4.96 85.55 0.42 2.93 16 7 C -0.15 -4.87 5.10 -19.83 -0.10 -4.97 16 8 C -0.05 -1.72 9.69 22.25 0.22 -1.50 16 9 C -0.21 -9.07 9.99 22.39 0.22 -8.84 16 10 C 0.11 5.83 6.65 22.58 0.15 5.98 16 11 O -0.23 -14.36 9.76 -22.68 -0.22 -14.58 16 12 C -0.41 -24.50 9.49 67.92 0.64 -23.85 16 13 H 0.10 5.44 5.20 -2.91 -0.02 5.42 16 14 C -0.02 -1.37 5.49 84.83 0.47 -0.90 16 15 N -0.92 -57.40 13.67 21.61 0.30 -57.11 16 16 Si 1.02 43.36 29.55 68.60 2.03 45.39 16 17 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 18 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 19 H -0.25 -10.00 7.11 99.48 0.71 -9.29 16 20 C -0.24 -10.76 9.17 22.39 0.21 -10.56 16 21 C -0.06 -2.13 8.72 22.25 0.19 -1.93 16 22 C 0.04 0.68 5.32 86.45 0.46 1.14 16 23 C -0.08 -1.33 3.29 -9.90 -0.03 -1.37 16 24 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 25 C 0.07 0.93 4.99 86.30 0.43 1.36 16 26 N -0.86 -9.91 9.62 -186.74 -1.80 -11.71 16 27 H 0.06 0.80 6.89 -2.39 -0.02 0.78 16 28 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.07 0.85 6.67 -2.39 -0.02 0.83 16 30 H 0.06 1.63 7.81 -2.39 -0.02 1.61 16 31 H 0.05 1.02 7.51 -2.39 -0.02 1.01 16 32 H 0.05 1.03 7.82 -2.39 -0.02 1.01 16 33 H 0.09 1.91 8.07 -2.39 -0.02 1.89 16 34 H 0.14 4.09 8.06 -2.91 -0.02 4.06 16 35 H 0.11 4.89 8.06 -2.91 -0.02 4.87 16 36 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 37 H 0.12 5.29 5.64 -2.91 -0.02 5.27 16 38 H 0.13 3.80 8.05 -2.91 -0.02 3.78 16 39 H 0.05 0.74 7.61 -2.39 -0.02 0.72 16 40 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.08 0.97 6.48 -2.39 -0.02 0.96 16 42 H 0.03 0.38 6.93 -2.39 -0.02 0.37 16 43 H 0.34 3.50 8.31 -89.69 -0.75 2.76 16 44 H 0.35 2.86 9.08 -89.70 -0.81 2.05 16 Total: -1.00 -70.81 347.83 -0.74 -71.56 By element: Atomic # 1 Polarization: 28.14 SS G_CDS: -0.55 Total: 27.60 kcal Atomic # 6 Polarization: -48.57 SS G_CDS: 4.25 Total: -44.32 kcal Atomic # 7 Polarization: -79.38 SS G_CDS: -6.25 Total: -85.64 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: -0.22 Total: -14.58 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -70.81 -0.74 -71.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205136087.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.166 kcal (2) G-P(sol) polarization free energy of solvation -70.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds