Wall clock time and date at job start Tue Mar 31 2020 07:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47002 * 2 1 4 4 C 1.50702 * 109.47408 * 239.99710 * 2 1 3 5 5 C 1.38221 * 119.61501 * 86.16506 * 4 2 1 6 6 C 1.38633 * 119.15881 * 179.75645 * 5 4 2 7 7 C 1.38675 * 118.42166 * 0.50495 * 6 5 4 8 8 C 1.38184 * 119.15852 * 359.73601 * 7 6 5 9 9 N 1.31856 * 119.61803 * 266.43640 * 4 2 1 10 10 N 1.46905 * 109.46982 * 119.99763 * 2 1 3 11 11 C 1.46847 * 111.00022 * 305.40530 * 10 2 1 12 12 C 1.53041 * 109.52384 * 174.16035 * 11 10 2 13 13 C 1.53115 * 109.30826 * 59.16154 * 12 11 10 14 14 C 1.53127 * 109.15879 * 302.40279 * 13 12 11 15 15 H 1.08997 * 109.50267 * 297.63708 * 14 13 12 16 16 O 1.42902 * 109.50364 * 177.56006 * 14 13 12 17 17 C 1.42900 * 113.99919 * 90.07784 * 16 14 13 18 18 C 1.50702 * 109.46910 * 179.97438 * 17 16 14 19 19 H 1.07998 * 120.00215 * 0.02562 * 18 17 16 20 20 C 1.37874 * 120.00133 * 180.02562 * 18 17 16 21 21 N 1.31521 * 119.99769 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00166 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46930 * 179.97438 * 22 20 18 24 24 H 1.48493 * 109.47352 * 300.00288 * 22 20 18 25 25 H 1.48501 * 109.46956 * 60.00281 * 22 20 18 26 26 C 1.46850 * 110.99818 * 181.19486 * 10 2 1 27 27 H 1.08999 * 109.47232 * 299.99919 * 1 2 3 28 28 H 1.09000 * 109.46971 * 60.00350 * 1 2 3 29 29 H 1.09005 * 109.46802 * 180.02562 * 1 2 3 30 30 H 1.07995 * 120.42636 * 359.97438 * 5 4 2 31 31 H 1.08000 * 120.79263 * 180.26178 * 6 5 4 32 32 H 1.07995 * 120.42353 * 179.71158 * 7 6 5 33 33 H 1.08008 * 119.61484 * 180.02562 * 8 7 6 34 34 H 1.09001 * 109.46077 * 294.17867 * 11 10 2 35 35 H 1.09005 * 109.46091 * 54.15452 * 11 10 2 36 36 H 1.09004 * 109.49984 * 179.12104 * 12 11 10 37 37 H 1.09000 * 109.50065 * 299.19820 * 12 11 10 38 38 H 1.09002 * 109.55691 * 182.48516 * 13 12 11 39 39 H 1.08992 * 109.49804 * 62.28756 * 13 12 11 40 40 H 1.09000 * 109.47065 * 60.00109 * 17 16 14 41 41 H 1.08993 * 109.47282 * 299.99718 * 17 16 14 42 42 H 0.96998 * 120.00295 * 359.97438 * 21 20 18 43 43 H 1.08996 * 109.46096 * 65.82595 * 26 10 2 44 44 H 1.08997 * 109.45313 * 305.84501 * 26 10 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 6 2.1844 -0.0076 -2.4108 6 6 2.6521 -0.6694 -3.5356 7 6 2.9407 -2.0219 -3.4333 8 6 2.7591 -2.6593 -2.2208 9 7 2.3169 -1.9966 -1.1698 10 7 2.0197 -0.6925 1.1995 11 6 1.4463 -0.1052 2.4172 12 6 1.8611 -0.9390 3.6315 13 6 3.3890 -0.9684 3.7274 14 6 3.9632 -1.5385 2.4273 15 1 3.6201 -2.5649 2.2972 16 8 5.3908 -1.5166 2.4863 17 6 5.9683 -2.7045 3.0317 18 6 7.4695 -2.5726 3.0455 19 1 7.9358 -1.6716 2.6753 20 6 8.2475 -3.6022 3.5308 21 7 7.6796 -4.6996 3.9812 22 14 10.1083 -3.4390 3.5473 23 1 10.7084 -4.6734 4.1142 24 1 10.6002 -3.2407 2.1603 25 1 10.4955 -2.2729 4.3813 26 6 3.4874 -0.6873 1.2478 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.9452 1.0446 -2.4555 31 1 2.7847 -0.1450 -4.4704 32 1 3.3024 -2.5702 -4.2905 33 1 2.9819 -3.7124 -2.1327 34 1 1.8116 0.9150 2.5351 35 1 0.3591 -0.0948 2.3382 36 1 1.4482 -0.4938 4.5368 37 1 1.4837 -1.9556 3.5210 38 1 3.6900 -1.5975 4.5651 39 1 3.7637 0.0439 3.8778 40 1 5.6848 -3.5605 2.4194 41 1 5.6066 -2.8501 4.0495 42 1 6.7134 -4.7845 3.9723 43 1 3.8431 0.3355 1.3713 44 1 3.8826 -1.0998 0.3195 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205620708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:21:04 Heat of formation + Delta-G solvation = -11.904213 kcal Electronic energy + Delta-G solvation = -23533.147168 eV Core-core repulsion = 20257.193664 eV Total energy + Delta-G solvation = -3275.953504 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.52940 -38.90092 -36.64160 -34.23767 -32.85951 -32.44239 -31.08421 -30.34450 -28.76965 -26.41755 -24.90143 -23.67895 -23.33589 -22.51704 -22.02443 -20.53822 -19.53220 -17.00403 -16.94829 -16.80046 -15.87200 -15.46986 -15.23186 -14.84823 -14.55601 -14.27802 -13.90061 -13.74839 -13.69510 -13.27299 -13.20297 -12.79530 -12.59282 -12.46734 -12.25911 -12.06773 -11.79918 -11.64911 -11.36970 -10.99183 -10.79833 -10.66776 -10.39185 -10.37233 -10.07670 -9.89059 -9.86639 -9.30528 -9.03545 -8.76229 -8.57222 -8.19936 -8.12501 -6.42217 -4.10395 1.02679 1.24596 3.44776 3.47871 3.66087 3.68302 3.79218 4.15615 4.48094 4.58958 4.77690 4.89101 4.98407 5.01455 5.03630 5.09428 5.12322 5.19439 5.29982 5.35714 5.38594 5.47864 5.56095 5.62403 5.66793 5.73432 5.80674 5.93099 5.93714 6.00344 6.07426 6.09985 6.11760 6.25636 6.29203 6.54205 6.62075 6.67505 6.88544 7.16468 7.20437 7.23960 7.96903 8.07446 8.24537 8.69125 8.86769 9.60188 10.98029 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.015304 B = 0.004245 C = 0.003531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.130990 B = 6594.168661 C = 7928.240877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.133 3.867 3 H 0.054 0.946 4 C 0.137 3.863 5 C -0.174 4.174 6 C -0.077 4.077 7 C -0.179 4.179 8 C 0.101 3.899 9 N -0.446 5.446 10 N -0.513 5.513 11 C 0.051 3.949 12 C -0.112 4.112 13 C -0.142 4.142 14 C 0.096 3.904 15 H 0.060 0.940 16 O -0.384 6.384 17 C 0.190 3.810 18 C -0.596 4.596 19 H 0.059 0.941 20 C 0.017 3.983 21 N -0.911 5.911 22 Si 1.078 2.922 23 H -0.281 1.281 24 H -0.286 1.286 25 H -0.286 1.286 26 C 0.070 3.930 27 H 0.066 0.934 28 H 0.059 0.941 29 H 0.069 0.931 30 H 0.130 0.870 31 H 0.132 0.868 32 H 0.132 0.868 33 H 0.156 0.844 34 H 0.030 0.970 35 H 0.078 0.922 36 H 0.065 0.935 37 H 0.071 0.929 38 H 0.065 0.935 39 H 0.062 0.938 40 H -0.005 1.005 41 H -0.005 1.005 42 H 0.267 0.733 43 H 0.031 0.969 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.361 9.990 -11.946 22.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.024 3.976 3 H 0.072 0.928 4 C -0.002 4.002 5 C -0.194 4.194 6 C -0.103 4.103 7 C -0.199 4.199 8 C -0.056 4.056 9 N -0.155 5.155 10 N -0.239 5.239 11 C -0.077 4.077 12 C -0.150 4.150 13 C -0.180 4.180 14 C 0.036 3.964 15 H 0.078 0.922 16 O -0.303 6.303 17 C 0.116 3.884 18 C -0.634 4.634 19 H 0.077 0.923 20 C -0.186 4.186 21 N -0.547 5.547 22 Si 0.905 3.095 23 H -0.206 1.206 24 H -0.213 1.213 25 H -0.213 1.213 26 C -0.057 4.057 27 H 0.085 0.915 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.148 0.852 31 H 0.150 0.850 32 H 0.150 0.850 33 H 0.173 0.827 34 H 0.049 0.951 35 H 0.097 0.903 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.013 0.987 41 H 0.012 0.988 42 H 0.077 0.923 43 H 0.049 0.951 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -15.098 8.420 -10.818 20.393 hybrid contribution -1.131 1.831 -1.181 2.454 sum -16.229 10.251 -11.998 22.637 Atomic orbital electron populations 1.21896 0.92898 1.03286 1.01872 1.20444 0.95728 0.94065 0.87356 0.92795 1.21114 0.94767 0.90459 0.93860 1.21866 1.02487 1.01243 0.93824 1.21497 0.95779 0.94543 0.98473 1.22170 1.02319 0.95663 0.99732 1.22922 0.94170 1.00450 0.88068 1.67644 1.09213 1.08221 1.30394 1.61689 1.07692 1.53983 1.00531 1.22229 0.99587 0.95892 0.89959 1.21518 0.96026 1.00954 0.96461 1.22097 0.94741 1.01848 0.99297 1.21737 0.83614 0.98533 0.92490 0.92205 1.87859 1.16204 1.42027 1.84205 1.20285 0.94299 0.82270 0.91595 1.21910 0.90173 1.05384 1.45977 0.92302 1.25913 1.07242 0.92139 0.93309 1.70790 1.12961 1.27264 1.43689 0.83417 0.73516 0.75934 0.76586 1.20612 1.21261 1.21260 1.21955 0.85834 0.98352 0.99594 0.91540 0.92160 0.91178 0.85164 0.85044 0.84970 0.82714 0.95140 0.90335 0.91591 0.91068 0.91632 0.91959 0.98705 0.98757 0.92264 0.95084 0.90275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 8.78 37.16 0.33 -1.03 16 2 C 0.13 1.61 2.33 -68.86 -0.16 1.45 16 3 H 0.05 0.61 8.10 -51.93 -0.42 0.19 16 4 C 0.14 1.78 4.82 -82.59 -0.40 1.39 16 5 C -0.17 -1.85 9.76 -39.44 -0.38 -2.24 16 6 C -0.08 -0.74 10.18 -39.27 -0.40 -1.14 16 7 C -0.18 -1.85 10.11 -39.44 -0.40 -2.24 16 8 C 0.10 1.29 11.18 -17.55 -0.20 1.09 16 9 N -0.45 -6.67 8.62 -9.47 -0.08 -6.76 16 10 N -0.51 -7.49 4.18 -228.07 -0.95 -8.44 16 11 C 0.05 0.64 5.11 -3.83 -0.02 0.62 16 12 C -0.11 -1.54 6.09 -26.65 -0.16 -1.70 16 13 C -0.14 -2.50 5.62 -26.61 -0.15 -2.65 16 14 C 0.10 1.96 2.77 -26.65 -0.07 1.89 16 15 H 0.06 1.30 7.79 -51.93 -0.40 0.90 16 16 O -0.38 -9.91 9.98 -35.23 -0.35 -10.26 16 17 C 0.19 5.42 4.81 36.01 0.17 5.60 16 18 C -0.60 -18.33 9.43 -34.44 -0.32 -18.65 16 19 H 0.06 1.82 7.81 -52.49 -0.41 1.41 16 20 C 0.02 0.51 5.46 -17.82 -0.10 0.42 16 21 N -0.91 -28.56 13.65 55.43 0.76 -27.81 16 22 Si 1.08 26.04 29.90 -169.99 -5.08 20.96 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 26 C 0.07 1.26 4.79 -3.83 -0.02 1.24 16 27 H 0.07 0.55 6.20 -51.93 -0.32 0.23 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 31 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 32 H 0.13 1.02 8.06 -52.49 -0.42 0.59 16 33 H 0.16 1.71 8.06 -52.48 -0.42 1.29 16 34 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.08 0.82 5.88 -51.93 -0.31 0.51 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.06 1.23 7.94 -51.93 -0.41 0.82 16 39 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 40 H 0.00 -0.14 7.95 -51.93 -0.41 -0.55 16 41 H -0.01 -0.15 7.81 -51.93 -0.41 -0.56 16 42 H 0.27 8.37 7.22 -40.82 -0.29 8.07 16 43 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.08 1.54 6.21 -51.93 -0.32 1.22 16 LS Contribution 351.04 15.07 5.29 5.29 Total: -1.00 -34.46 351.04 -9.86 -44.32 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -7.16 Total: -1.34 kcal Atomic # 6 Polarization: -13.68 SS G_CDS: -2.28 Total: -15.96 kcal Atomic # 7 Polarization: -42.73 SS G_CDS: -0.28 Total: -43.00 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: -0.35 Total: -10.26 kcal Atomic # 14 Polarization: 26.04 SS G_CDS: -5.08 Total: 20.96 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.46 -9.86 -44.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205620708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.415 kcal (2) G-P(sol) polarization free energy of solvation -34.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds