Wall clock time and date at job start Tue Mar 31 2020 07:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47002 * 2 1 4 4 C 1.50702 * 109.47408 * 239.99710 * 2 1 3 5 5 C 1.38221 * 119.61501 * 86.16506 * 4 2 1 6 6 C 1.38633 * 119.15881 * 179.75645 * 5 4 2 7 7 C 1.38675 * 118.42166 * 0.50495 * 6 5 4 8 8 C 1.38184 * 119.15852 * 359.73601 * 7 6 5 9 9 N 1.31856 * 119.61803 * 266.43640 * 4 2 1 10 10 N 1.46905 * 109.46982 * 119.99763 * 2 1 3 11 11 C 1.46847 * 111.00022 * 305.40530 * 10 2 1 12 12 C 1.53041 * 109.52384 * 174.16035 * 11 10 2 13 13 C 1.53115 * 109.30826 * 59.16154 * 12 11 10 14 14 C 1.53127 * 109.15879 * 302.40279 * 13 12 11 15 15 H 1.08997 * 109.50267 * 297.63708 * 14 13 12 16 16 O 1.42902 * 109.50364 * 177.56006 * 14 13 12 17 17 C 1.42900 * 113.99919 * 90.07784 * 16 14 13 18 18 C 1.50702 * 109.46910 * 179.97438 * 17 16 14 19 19 H 1.07998 * 120.00215 * 0.02562 * 18 17 16 20 20 C 1.37874 * 120.00133 * 180.02562 * 18 17 16 21 21 N 1.31521 * 119.99769 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00166 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46930 * 179.97438 * 22 20 18 24 24 H 1.48493 * 109.47352 * 300.00288 * 22 20 18 25 25 H 1.48501 * 109.46956 * 60.00281 * 22 20 18 26 26 C 1.46850 * 110.99818 * 181.19486 * 10 2 1 27 27 H 1.08999 * 109.47232 * 299.99919 * 1 2 3 28 28 H 1.09000 * 109.46971 * 60.00350 * 1 2 3 29 29 H 1.09005 * 109.46802 * 180.02562 * 1 2 3 30 30 H 1.07995 * 120.42636 * 359.97438 * 5 4 2 31 31 H 1.08000 * 120.79263 * 180.26178 * 6 5 4 32 32 H 1.07995 * 120.42353 * 179.71158 * 7 6 5 33 33 H 1.08008 * 119.61484 * 180.02562 * 8 7 6 34 34 H 1.09001 * 109.46077 * 294.17867 * 11 10 2 35 35 H 1.09005 * 109.46091 * 54.15452 * 11 10 2 36 36 H 1.09004 * 109.49984 * 179.12104 * 12 11 10 37 37 H 1.09000 * 109.50065 * 299.19820 * 12 11 10 38 38 H 1.09002 * 109.55691 * 182.48516 * 13 12 11 39 39 H 1.08992 * 109.49804 * 62.28756 * 13 12 11 40 40 H 1.09000 * 109.47065 * 60.00109 * 17 16 14 41 41 H 1.08993 * 109.47282 * 299.99718 * 17 16 14 42 42 H 0.96998 * 120.00295 * 359.97438 * 21 20 18 43 43 H 1.08996 * 109.46096 * 65.82595 * 26 10 2 44 44 H 1.08997 * 109.45313 * 305.84501 * 26 10 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 6 2.1844 -0.0076 -2.4108 6 6 2.6521 -0.6694 -3.5356 7 6 2.9407 -2.0219 -3.4333 8 6 2.7591 -2.6593 -2.2208 9 7 2.3169 -1.9966 -1.1698 10 7 2.0197 -0.6925 1.1995 11 6 1.4463 -0.1052 2.4172 12 6 1.8611 -0.9390 3.6315 13 6 3.3890 -0.9684 3.7274 14 6 3.9632 -1.5385 2.4273 15 1 3.6201 -2.5649 2.2972 16 8 5.3908 -1.5166 2.4863 17 6 5.9683 -2.7045 3.0317 18 6 7.4695 -2.5726 3.0455 19 1 7.9358 -1.6716 2.6753 20 6 8.2475 -3.6022 3.5308 21 7 7.6796 -4.6996 3.9812 22 14 10.1083 -3.4390 3.5473 23 1 10.7084 -4.6734 4.1142 24 1 10.6002 -3.2407 2.1603 25 1 10.4955 -2.2729 4.3813 26 6 3.4874 -0.6873 1.2478 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.9452 1.0446 -2.4555 31 1 2.7847 -0.1450 -4.4704 32 1 3.3024 -2.5702 -4.2905 33 1 2.9819 -3.7124 -2.1327 34 1 1.8116 0.9150 2.5351 35 1 0.3591 -0.0948 2.3382 36 1 1.4482 -0.4938 4.5368 37 1 1.4837 -1.9556 3.5210 38 1 3.6900 -1.5975 4.5651 39 1 3.7637 0.0439 3.8778 40 1 5.6848 -3.5605 2.4194 41 1 5.6066 -2.8501 4.0495 42 1 6.7134 -4.7845 3.9723 43 1 3.8431 0.3355 1.3713 44 1 3.8826 -1.0998 0.3195 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205620708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:53 Heat of formation + Delta-G solvation = -34.630238 kcal Electronic energy + Delta-G solvation = -23534.132642 eV Core-core repulsion = 20257.193664 eV Total energy + Delta-G solvation = -3276.938978 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 10.59 seconds Orbital eigenvalues (eV) -41.47488 -40.21299 -38.33994 -35.66497 -34.93330 -33.30304 -32.16522 -31.61430 -29.95934 -28.56961 -25.98651 -24.88622 -24.58420 -24.33709 -23.32717 -21.60814 -20.86167 -19.22299 -18.08453 -17.80575 -17.19532 -16.68718 -16.40929 -16.20702 -16.03739 -15.67893 -15.48511 -15.11586 -14.91776 -14.52038 -14.36471 -14.33812 -14.11191 -13.95816 -13.33473 -13.21121 -13.03893 -12.82120 -12.76620 -12.59894 -12.28229 -12.09863 -11.92010 -11.91174 -11.65079 -11.51583 -10.89589 -10.83221 -10.73846 -10.33640 -10.18544 -9.89499 -9.28078 -8.87971 -6.59235 0.17374 0.42810 1.49885 1.59523 1.81013 2.39617 2.55676 2.88094 2.99659 3.22300 3.33232 3.73287 3.76205 3.81619 3.97514 4.05126 4.13765 4.16346 4.21809 4.27322 4.30479 4.37398 4.41346 4.49248 4.53221 4.63208 4.67948 4.76779 4.79062 4.80655 4.87001 4.91441 4.96501 5.00235 5.14710 5.20380 5.26240 5.28003 5.32101 5.63733 5.79816 5.85608 6.02182 6.14534 6.27586 6.61945 7.18918 7.22567 8.52614 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.015304 B = 0.004245 C = 0.003531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.130990 B = 6594.168661 C = 7928.240877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.130 3.870 3 H 0.068 0.932 4 C 0.112 3.888 5 C -0.173 4.173 6 C -0.076 4.076 7 C -0.176 4.176 8 C 0.071 3.929 9 N -0.490 5.490 10 N -0.524 5.524 11 C 0.051 3.949 12 C -0.104 4.104 13 C -0.136 4.136 14 C 0.087 3.913 15 H 0.037 0.963 16 O -0.402 6.402 17 C 0.205 3.795 18 C -0.626 4.626 19 H 0.053 0.947 20 C -0.027 4.027 21 N -0.925 5.925 22 Si 1.130 2.870 23 H -0.273 1.273 24 H -0.267 1.267 25 H -0.265 1.265 26 C 0.089 3.911 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.052 0.948 30 H 0.159 0.841 31 H 0.167 0.833 32 H 0.158 0.842 33 H 0.154 0.846 34 H 0.041 0.959 35 H 0.110 0.890 36 H 0.097 0.903 37 H 0.062 0.938 38 H 0.045 0.955 39 H 0.064 0.936 40 H -0.027 1.027 41 H -0.018 1.018 42 H 0.254 0.746 43 H 0.030 0.970 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.956 12.236 -13.018 24.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.022 3.978 3 H 0.085 0.915 4 C -0.027 4.027 5 C -0.193 4.193 6 C -0.102 4.102 7 C -0.196 4.196 8 C -0.085 4.085 9 N -0.199 5.199 10 N -0.250 5.250 11 C -0.076 4.076 12 C -0.142 4.142 13 C -0.174 4.174 14 C 0.029 3.971 15 H 0.055 0.945 16 O -0.321 6.321 17 C 0.130 3.870 18 C -0.664 4.664 19 H 0.071 0.929 20 C -0.225 4.225 21 N -0.561 5.561 22 Si 0.948 3.052 23 H -0.198 1.198 24 H -0.192 1.192 25 H -0.190 1.190 26 C -0.039 4.039 27 H 0.102 0.898 28 H 0.099 0.901 29 H 0.071 0.929 30 H 0.176 0.824 31 H 0.184 0.816 32 H 0.176 0.824 33 H 0.172 0.828 34 H 0.060 0.940 35 H 0.128 0.872 36 H 0.115 0.885 37 H 0.081 0.919 38 H 0.064 0.936 39 H 0.083 0.917 40 H -0.009 1.009 41 H -0.001 1.001 42 H 0.063 0.937 43 H 0.048 0.952 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -15.748 10.679 -11.902 22.443 hybrid contribution -1.039 1.129 -0.905 1.781 sum -16.786 11.808 -12.807 24.192 Atomic orbital electron populations 1.21858 0.90736 1.02698 1.03764 1.20644 0.97320 0.94116 0.85765 0.91472 1.21423 0.95741 0.90243 0.95265 1.22205 1.01492 1.02496 0.93155 1.21959 0.94408 0.94267 0.99592 1.22455 1.01314 0.96399 0.99433 1.23116 0.95468 1.00895 0.89054 1.67531 1.10765 1.09728 1.31872 1.61647 1.05150 1.55656 1.02561 1.22343 1.01246 0.95770 0.88261 1.21522 0.92557 1.01325 0.98809 1.22036 0.97845 1.01019 0.96526 1.22056 0.80894 0.98394 0.95797 0.94512 1.87795 1.19613 1.40542 1.84160 1.19910 0.93964 0.82643 0.90470 1.22257 0.91355 1.05757 1.46982 0.92851 1.27698 1.12205 0.91021 0.91565 1.70921 1.12254 1.28207 1.44725 0.82818 0.67390 0.76948 0.78070 1.19815 1.19192 1.19029 1.21617 0.88428 0.97042 0.96813 0.89802 0.90083 0.92930 0.82356 0.81574 0.82426 0.82821 0.94045 0.87245 0.88470 0.91876 0.93634 0.91702 1.00891 1.00054 0.93702 0.95216 0.92542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.20 8.78 71.98 0.63 -1.56 16 2 C 0.13 2.95 2.33 44.17 0.10 3.05 16 3 H 0.07 1.35 8.10 -2.39 -0.02 1.33 16 4 C 0.11 2.85 4.82 42.55 0.20 3.05 16 5 C -0.17 -3.33 9.76 22.36 0.22 -3.11 16 6 C -0.08 -1.30 10.18 22.47 0.23 -1.07 16 7 C -0.18 -3.47 10.11 22.36 0.23 -3.24 16 8 C 0.07 1.89 11.18 84.67 0.95 2.84 16 9 N -0.49 -15.18 8.62 -183.88 -1.58 -16.77 16 10 N -0.52 -15.01 4.18 -875.47 -3.66 -18.67 16 11 C 0.05 1.16 5.11 86.33 0.44 1.60 16 12 C -0.10 -2.75 6.09 30.65 0.19 -2.56 16 13 C -0.14 -4.91 5.62 30.68 0.17 -4.74 16 14 C 0.09 3.76 2.77 30.65 0.08 3.85 16 15 H 0.04 1.73 7.79 -2.39 -0.02 1.72 16 16 O -0.40 -21.82 9.98 -148.98 -1.49 -23.31 16 17 C 0.21 12.39 4.81 71.24 0.34 12.73 16 18 C -0.63 -39.64 9.43 25.60 0.24 -39.40 16 19 H 0.05 3.36 7.81 -2.91 -0.02 3.34 16 20 C -0.03 -1.67 5.46 84.65 0.46 -1.20 16 21 N -0.93 -59.27 13.65 21.45 0.29 -58.98 16 22 Si 1.13 51.83 29.90 68.60 2.05 53.88 16 23 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 24 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 25 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 26 C 0.09 3.28 4.79 86.33 0.41 3.69 16 27 H 0.08 1.07 6.20 -2.39 -0.01 1.06 16 28 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 30 H 0.16 2.02 8.06 -2.91 -0.02 2.00 16 31 H 0.17 1.61 8.06 -2.91 -0.02 1.59 16 32 H 0.16 2.15 8.06 -2.91 -0.02 2.13 16 33 H 0.15 3.75 8.06 -2.91 -0.02 3.73 16 34 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.11 1.89 5.88 -2.38 -0.01 1.88 16 36 H 0.10 1.99 8.14 -2.38 -0.02 1.97 16 37 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.04 1.78 7.94 -2.39 -0.02 1.77 16 39 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 40 H -0.03 -1.67 7.95 -2.39 -0.02 -1.69 16 41 H -0.02 -1.12 7.81 -2.39 -0.02 -1.14 16 42 H 0.25 16.58 7.22 -92.71 -0.67 15.91 16 43 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.06 2.32 6.21 -2.39 -0.01 2.30 16 Total: -1.00 -78.31 351.04 1.58 -76.73 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: 1.06 Total: 13.20 kcal Atomic # 6 Polarization: -30.99 SS G_CDS: 4.90 Total: -26.09 kcal Atomic # 7 Polarization: -89.46 SS G_CDS: -4.95 Total: -94.41 kcal Atomic # 8 Polarization: -21.82 SS G_CDS: -1.49 Total: -23.31 kcal Atomic # 14 Polarization: 51.83 SS G_CDS: 2.05 Total: 53.88 kcal Total: -78.31 1.58 -76.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205620708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.099 kcal (2) G-P(sol) polarization free energy of solvation -78.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 10.59 seconds