Wall clock time and date at job start Tue Mar 31 2020 07:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47596 * 2 1 4 4 C 1.50697 * 109.46900 * 120.00160 * 2 1 3 5 5 C 1.38229 * 119.62011 * 273.95337 * 4 2 1 6 6 C 1.38624 * 119.16559 * 179.97438 * 5 4 2 7 7 C 1.38675 * 118.42065 * 0.02562 * 6 5 4 8 8 C 1.38190 * 119.16165 * 359.97438 * 7 6 5 9 9 N 1.31857 * 119.62218 * 93.68515 * 4 2 1 10 10 N 1.46904 * 109.46801 * 239.99768 * 2 1 3 11 11 C 1.46843 * 110.99947 * 54.56678 * 10 2 1 12 12 C 1.53038 * 109.52422 * 185.83725 * 11 10 2 13 13 C 1.53127 * 109.30962 * 300.84300 * 12 11 10 14 14 C 1.53117 * 109.15824 * 57.59394 * 13 12 11 15 15 H 1.08996 * 109.50432 * 62.36479 * 14 13 12 16 16 O 1.42900 * 109.50151 * 182.44762 * 14 13 12 17 17 C 1.42904 * 113.99701 * 269.92163 * 16 14 13 18 18 C 1.50695 * 109.47094 * 180.02562 * 17 16 14 19 19 H 1.08000 * 120.00568 * 359.97438 * 18 17 16 20 20 C 1.37878 * 120.00055 * 179.97438 * 18 17 16 21 21 N 1.31520 * 120.00032 * 179.97438 * 20 18 17 22 22 Si 1.86797 * 120.00093 * 359.97438 * 20 18 17 23 23 H 1.48503 * 109.47193 * 89.99428 * 22 20 18 24 24 H 1.48492 * 109.47379 * 209.99900 * 22 20 18 25 25 H 1.48506 * 109.47061 * 329.99906 * 22 20 18 26 26 C 1.46846 * 110.99863 * 178.77669 * 10 2 1 27 27 H 1.08996 * 109.46983 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46522 * 300.00022 * 1 2 3 29 29 H 1.09002 * 109.47044 * 59.99809 * 1 2 3 30 30 H 1.08002 * 120.41416 * 0.02562 * 5 4 2 31 31 H 1.08000 * 120.79462 * 180.02562 * 6 5 4 32 32 H 1.08001 * 120.42243 * 179.97438 * 7 6 5 33 33 H 1.08000 * 119.61607 * 180.02562 * 8 7 6 34 34 H 1.09000 * 109.46403 * 305.85582 * 11 10 2 35 35 H 1.09004 * 109.46567 * 65.81949 * 11 10 2 36 36 H 1.08995 * 109.50003 * 60.76152 * 12 11 10 37 37 H 1.09002 * 109.50428 * 180.84203 * 12 11 10 38 38 H 1.09005 * 109.48781 * 297.70979 * 13 12 11 39 39 H 1.08999 * 109.55407 * 177.52020 * 13 12 11 40 40 H 1.09005 * 109.46707 * 299.99606 * 17 16 14 41 41 H 1.08995 * 109.47328 * 59.99571 * 17 16 14 42 42 H 0.97005 * 119.99716 * 180.02562 * 21 20 18 43 43 H 1.09004 * 109.46237 * 54.14593 * 26 10 2 44 44 H 1.09004 * 109.46022 * 294.17729 * 26 10 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 2.1819 -0.0082 2.4116 6 6 2.6441 -0.6712 3.5379 7 6 2.9405 -2.0218 3.4335 8 6 2.7660 -2.6576 2.2190 9 7 2.3190 -1.9960 1.1694 10 7 2.0196 -0.6926 -1.1995 11 6 1.4457 -0.1058 -2.4171 12 6 1.8606 -0.9397 -3.6314 13 6 3.3886 -0.9686 -3.7275 14 6 3.9632 -1.5382 -2.4275 15 1 3.6205 -2.5646 -2.2971 16 8 5.3908 -1.5156 -2.4868 17 6 5.9687 -2.7034 -3.0321 18 6 7.4697 -2.5709 -3.0463 19 1 7.9359 -1.6696 -2.6764 20 6 8.2481 -3.6003 -3.5316 21 7 9.5581 -3.4844 -3.5445 22 14 7.4420 -5.1594 -4.1708 23 1 7.1664 -5.0147 -5.6228 24 1 8.3518 -6.3125 -3.9522 25 1 6.1669 -5.3906 -3.4456 26 6 3.4873 -0.6869 -1.2482 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3632 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.9409 1.0437 2.4566 31 1 2.7704 -0.1483 4.4744 32 1 3.3031 -2.5700 4.2905 33 1 2.9941 -3.7094 2.1296 34 1 0.3586 -0.0956 -2.3378 35 1 1.8105 0.9146 -2.5354 36 1 1.4842 -1.9565 -3.5202 37 1 1.4468 -0.4953 -4.5366 38 1 3.7627 0.0440 -3.8783 39 1 3.6895 -1.5977 -4.5652 40 1 5.6856 -3.5594 -2.4194 41 1 5.6067 -2.8494 -4.0498 42 1 10.1057 -4.2085 -3.8863 43 1 3.8831 -1.0989 -0.3198 44 1 3.8426 0.3362 -1.3719 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205620711.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:21:15 Heat of formation + Delta-G solvation = -3.500024 kcal Electronic energy + Delta-G solvation = -23559.792667 eV Core-core repulsion = 20284.203596 eV Total energy + Delta-G solvation = -3275.589071 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 6.32 seconds Orbital eigenvalues (eV) -40.53046 -38.91793 -36.67531 -34.21750 -32.57899 -32.43468 -31.09392 -30.42174 -28.95354 -27.47700 -24.95247 -23.67943 -23.33595 -22.25716 -21.71361 -20.53579 -19.55242 -17.04835 -16.91490 -16.63467 -15.83638 -15.52064 -15.34914 -14.78177 -14.57178 -14.35064 -14.28964 -13.80758 -13.68946 -13.26830 -13.17882 -12.84228 -12.71158 -12.32964 -12.20158 -12.10481 -12.01079 -11.76467 -11.36442 -10.98312 -10.91038 -10.77963 -10.50267 -10.35329 -10.02661 -9.88023 -9.78411 -9.30901 -9.12333 -9.03085 -8.77017 -8.38146 -8.16598 -6.08315 -4.06858 1.02864 1.24783 3.28050 3.34791 3.38238 3.67143 3.78672 4.15427 4.39373 4.55325 4.77994 4.85390 4.97532 5.00576 5.02801 5.08724 5.10528 5.18222 5.23185 5.28667 5.38034 5.47175 5.55963 5.61411 5.64885 5.72347 5.79459 5.92244 5.92588 5.99128 6.07209 6.08859 6.11124 6.23543 6.25828 6.48847 6.61744 6.65015 6.74317 7.08125 7.15473 7.21396 7.64976 8.07031 8.10737 8.72393 9.03125 9.51546 11.04779 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.015425 B = 0.004473 C = 0.003761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.746767 B = 6257.928830 C = 7443.587903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.133 3.867 3 H 0.055 0.945 4 C 0.137 3.863 5 C -0.174 4.174 6 C -0.077 4.077 7 C -0.179 4.179 8 C 0.101 3.899 9 N -0.447 5.447 10 N -0.513 5.513 11 C 0.050 3.950 12 C -0.112 4.112 13 C -0.143 4.143 14 C 0.094 3.906 15 H 0.061 0.939 16 O -0.377 6.377 17 C 0.172 3.828 18 C -0.518 4.518 19 H 0.081 0.919 20 C 0.073 3.927 21 N -0.897 5.897 22 Si 0.874 3.126 23 H -0.274 1.274 24 H -0.282 1.282 25 H -0.265 1.265 26 C 0.069 3.931 27 H 0.069 0.931 28 H 0.059 0.941 29 H 0.066 0.934 30 H 0.130 0.870 31 H 0.132 0.868 32 H 0.132 0.868 33 H 0.155 0.845 34 H 0.078 0.922 35 H 0.031 0.969 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.003 0.997 41 H -0.002 1.002 42 H 0.266 0.734 43 H 0.080 0.920 44 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.901 6.769 10.785 24.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.024 3.976 3 H 0.073 0.927 4 C -0.002 4.002 5 C -0.194 4.194 6 C -0.103 4.103 7 C -0.199 4.199 8 C -0.056 4.056 9 N -0.155 5.155 10 N -0.239 5.239 11 C -0.077 4.077 12 C -0.150 4.150 13 C -0.181 4.181 14 C 0.035 3.965 15 H 0.079 0.921 16 O -0.296 6.296 17 C 0.097 3.903 18 C -0.556 4.556 19 H 0.099 0.901 20 C -0.129 4.129 21 N -0.535 5.535 22 Si 0.701 3.299 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.189 1.189 26 C -0.059 4.059 27 H 0.088 0.912 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.148 0.852 31 H 0.150 0.850 32 H 0.150 0.850 33 H 0.173 0.827 34 H 0.096 0.904 35 H 0.049 0.951 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.021 0.979 41 H 0.015 0.985 42 H 0.076 0.924 43 H 0.098 0.902 44 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -20.862 5.892 10.021 23.882 hybrid contribution 0.133 0.165 0.380 0.435 sum -20.729 6.057 10.401 23.970 Atomic orbital electron populations 1.21896 0.92923 1.03254 1.01878 1.20441 0.95700 0.94110 0.87334 0.92730 1.21108 0.94783 0.90441 0.93855 1.21870 1.02478 1.01244 0.93792 1.21497 0.95748 0.94532 0.98488 1.22172 1.02275 0.95701 0.99723 1.22910 0.94204 1.00416 0.88090 1.67634 1.09210 1.08235 1.30451 1.61689 1.07692 1.54008 1.00536 1.22227 0.99586 0.95948 0.89946 1.21520 0.96027 1.00928 0.96507 1.22117 0.94754 1.02057 0.99204 1.21767 0.83493 0.98647 0.92634 0.92081 1.87888 1.16223 1.41423 1.84034 1.20608 0.94737 0.83109 0.91858 1.20907 0.88077 1.04532 1.42049 0.90068 1.24754 0.94692 0.98148 0.95304 1.69883 1.03813 1.33217 1.46632 0.86868 0.79893 0.83311 0.79857 1.19919 1.20784 1.18944 1.21962 0.85825 0.98488 0.99580 0.91207 0.92173 0.91540 0.85158 0.85047 0.84982 0.82734 0.90362 0.95076 0.91111 0.91575 0.91741 0.91586 0.97900 0.98458 0.92416 0.90151 0.94910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 8.78 37.16 0.33 -0.97 16 2 C 0.13 1.56 2.33 -68.86 -0.16 1.40 16 3 H 0.06 0.60 8.10 -51.93 -0.42 0.18 16 4 C 0.14 1.73 4.82 -82.59 -0.40 1.33 16 5 C -0.17 -1.80 9.76 -39.44 -0.39 -2.19 16 6 C -0.08 -0.73 10.18 -39.28 -0.40 -1.13 16 7 C -0.18 -1.80 10.11 -39.44 -0.40 -2.20 16 8 C 0.10 1.24 11.18 -17.55 -0.20 1.05 16 9 N -0.45 -6.46 8.61 -9.47 -0.08 -6.54 16 10 N -0.51 -7.18 4.18 -228.08 -0.95 -8.13 16 11 C 0.05 0.60 5.11 -3.84 -0.02 0.59 16 12 C -0.11 -1.45 6.09 -26.65 -0.16 -1.61 16 13 C -0.14 -2.38 5.62 -26.60 -0.15 -2.53 16 14 C 0.09 1.83 2.77 -26.65 -0.07 1.75 16 15 H 0.06 1.24 7.79 -51.93 -0.40 0.83 16 16 O -0.38 -9.29 9.98 -35.23 -0.35 -9.64 16 17 C 0.17 4.57 4.57 36.00 0.16 4.73 16 18 C -0.52 -15.83 9.99 -34.44 -0.34 -16.17 16 19 H 0.08 2.71 8.06 -52.49 -0.42 2.29 16 20 C 0.07 2.18 5.47 -17.82 -0.10 2.08 16 21 N -0.90 -28.15 13.96 55.43 0.77 -27.38 16 22 Si 0.87 21.93 27.47 -169.99 -4.67 17.26 16 23 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.26 -6.43 6.54 56.52 0.37 -6.06 16 26 C 0.07 1.18 4.79 -3.83 -0.02 1.17 16 27 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.52 6.20 -51.93 -0.32 0.20 16 30 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 31 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 32 H 0.13 0.99 8.06 -52.49 -0.42 0.56 16 33 H 0.16 1.63 8.06 -52.49 -0.42 1.21 16 34 H 0.08 0.78 5.88 -51.93 -0.31 0.47 16 35 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 39 H 0.07 1.14 7.94 -51.93 -0.41 0.73 16 40 H 0.00 0.09 7.14 -51.93 -0.37 -0.28 16 41 H 0.00 -0.06 7.37 -51.93 -0.38 -0.44 16 42 H 0.27 7.72 8.31 -40.82 -0.34 7.38 16 43 H 0.08 1.51 6.21 -51.93 -0.32 1.19 16 44 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 LS Contribution 348.74 15.07 5.26 5.26 Total: -1.00 -33.91 348.74 -9.52 -43.43 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: -7.18 Total: -1.56 kcal Atomic # 6 Polarization: -10.38 SS G_CDS: -2.31 Total: -12.70 kcal Atomic # 7 Polarization: -41.79 SS G_CDS: -0.26 Total: -42.05 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: -0.35 Total: -9.64 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.67 Total: 17.26 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.91 -9.52 -43.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205620711.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.926 kcal (2) G-P(sol) polarization free energy of solvation -33.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.33 seconds