Wall clock time and date at job start Tue Mar 31 2020 07:21:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47596 * 2 1 4 4 C 1.50697 * 109.46900 * 120.00160 * 2 1 3 5 5 C 1.38229 * 119.62011 * 273.95337 * 4 2 1 6 6 C 1.38624 * 119.16559 * 179.97438 * 5 4 2 7 7 C 1.38675 * 118.42065 * 0.02562 * 6 5 4 8 8 C 1.38190 * 119.16165 * 359.97438 * 7 6 5 9 9 N 1.31857 * 119.62218 * 93.68515 * 4 2 1 10 10 N 1.46904 * 109.46801 * 239.99768 * 2 1 3 11 11 C 1.46843 * 110.99947 * 54.56678 * 10 2 1 12 12 C 1.53038 * 109.52422 * 185.83725 * 11 10 2 13 13 C 1.53127 * 109.30962 * 300.84300 * 12 11 10 14 14 C 1.53117 * 109.15824 * 57.59394 * 13 12 11 15 15 H 1.08996 * 109.50432 * 62.36479 * 14 13 12 16 16 O 1.42900 * 109.50151 * 182.44762 * 14 13 12 17 17 C 1.42904 * 113.99701 * 269.92163 * 16 14 13 18 18 C 1.50695 * 109.47094 * 180.02562 * 17 16 14 19 19 H 1.08000 * 120.00568 * 359.97438 * 18 17 16 20 20 C 1.37878 * 120.00055 * 179.97438 * 18 17 16 21 21 N 1.31520 * 120.00032 * 179.97438 * 20 18 17 22 22 Si 1.86797 * 120.00093 * 359.97438 * 20 18 17 23 23 H 1.48503 * 109.47193 * 89.99428 * 22 20 18 24 24 H 1.48492 * 109.47379 * 209.99900 * 22 20 18 25 25 H 1.48506 * 109.47061 * 329.99906 * 22 20 18 26 26 C 1.46846 * 110.99863 * 178.77669 * 10 2 1 27 27 H 1.08996 * 109.46983 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46522 * 300.00022 * 1 2 3 29 29 H 1.09002 * 109.47044 * 59.99809 * 1 2 3 30 30 H 1.08002 * 120.41416 * 0.02562 * 5 4 2 31 31 H 1.08000 * 120.79462 * 180.02562 * 6 5 4 32 32 H 1.08001 * 120.42243 * 179.97438 * 7 6 5 33 33 H 1.08000 * 119.61607 * 180.02562 * 8 7 6 34 34 H 1.09000 * 109.46403 * 305.85582 * 11 10 2 35 35 H 1.09004 * 109.46567 * 65.81949 * 11 10 2 36 36 H 1.08995 * 109.50003 * 60.76152 * 12 11 10 37 37 H 1.09002 * 109.50428 * 180.84203 * 12 11 10 38 38 H 1.09005 * 109.48781 * 297.70979 * 13 12 11 39 39 H 1.08999 * 109.55407 * 177.52020 * 13 12 11 40 40 H 1.09005 * 109.46707 * 299.99606 * 17 16 14 41 41 H 1.08995 * 109.47328 * 59.99571 * 17 16 14 42 42 H 0.97005 * 119.99716 * 180.02562 * 21 20 18 43 43 H 1.09004 * 109.46237 * 54.14593 * 26 10 2 44 44 H 1.09004 * 109.46022 * 294.17729 * 26 10 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 2.1819 -0.0082 2.4116 6 6 2.6441 -0.6712 3.5379 7 6 2.9405 -2.0218 3.4335 8 6 2.7660 -2.6576 2.2190 9 7 2.3190 -1.9960 1.1694 10 7 2.0196 -0.6926 -1.1995 11 6 1.4457 -0.1058 -2.4171 12 6 1.8606 -0.9397 -3.6314 13 6 3.3886 -0.9686 -3.7275 14 6 3.9632 -1.5382 -2.4275 15 1 3.6205 -2.5646 -2.2971 16 8 5.3908 -1.5156 -2.4868 17 6 5.9687 -2.7034 -3.0321 18 6 7.4697 -2.5709 -3.0463 19 1 7.9359 -1.6696 -2.6764 20 6 8.2481 -3.6003 -3.5316 21 7 9.5581 -3.4844 -3.5445 22 14 7.4420 -5.1594 -4.1708 23 1 7.1664 -5.0147 -5.6228 24 1 8.3518 -6.3125 -3.9522 25 1 6.1669 -5.3906 -3.4456 26 6 3.4873 -0.6869 -1.2482 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3632 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.9409 1.0437 2.4566 31 1 2.7704 -0.1483 4.4744 32 1 3.3031 -2.5700 4.2905 33 1 2.9941 -3.7094 2.1296 34 1 0.3586 -0.0956 -2.3378 35 1 1.8105 0.9146 -2.5354 36 1 1.4842 -1.9565 -3.5202 37 1 1.4468 -0.4953 -4.5366 38 1 3.7627 0.0440 -3.8783 39 1 3.6895 -1.5977 -4.5652 40 1 5.6856 -3.5594 -2.4194 41 1 5.6067 -2.8494 -4.0498 42 1 10.1057 -4.2085 -3.8863 43 1 3.8831 -1.0989 -0.3198 44 1 3.8426 0.3362 -1.3719 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205620711.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:21:09 Heat of formation + Delta-G solvation = -26.428007 kcal Electronic energy + Delta-G solvation = -23560.786899 eV Core-core repulsion = 20284.203596 eV Total energy + Delta-G solvation = -3276.583303 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 5.88 seconds Orbital eigenvalues (eV) -41.43159 -40.14447 -38.25168 -35.44947 -34.75108 -33.27211 -32.10810 -31.70581 -30.28902 -29.26446 -25.94316 -24.66174 -24.30743 -24.05332 -23.23565 -21.56806 -20.78026 -19.09732 -17.92964 -17.76348 -17.26961 -16.70727 -16.42587 -16.24735 -16.05112 -15.85386 -15.41001 -14.98719 -14.81584 -14.69353 -14.37007 -14.13695 -13.95839 -13.91301 -13.41844 -13.16726 -13.06443 -12.87709 -12.76584 -12.58634 -12.28966 -12.06357 -11.91941 -11.77650 -11.68465 -11.41666 -11.31313 -10.94290 -10.71846 -10.31274 -10.15202 -9.86171 -9.23755 -8.41332 -6.49430 0.20569 0.45472 1.29783 1.32755 1.44332 2.26091 2.52265 2.90861 2.91255 3.26934 3.36935 3.81291 3.84558 3.85949 4.05781 4.08150 4.19395 4.22391 4.26337 4.30615 4.33915 4.44068 4.48439 4.56413 4.60468 4.67225 4.74361 4.82964 4.83685 4.88854 4.95327 4.96331 5.04350 5.05548 5.21445 5.23910 5.30445 5.32163 5.37849 5.41458 5.82608 5.89443 6.07463 6.19431 6.53743 6.71627 7.15151 7.21524 8.75826 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.015425 B = 0.004473 C = 0.003761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.746767 B = 6257.928830 C = 7443.587903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.130 3.870 3 H 0.064 0.936 4 C 0.113 3.887 5 C -0.176 4.176 6 C -0.078 4.078 7 C -0.178 4.178 8 C 0.074 3.926 9 N -0.487 5.487 10 N -0.520 5.520 11 C 0.049 3.951 12 C -0.104 4.104 13 C -0.140 4.140 14 C 0.086 3.914 15 H 0.050 0.950 16 O -0.404 6.404 17 C 0.187 3.813 18 C -0.547 4.547 19 H 0.030 0.970 20 C 0.018 3.982 21 N -0.939 5.939 22 Si 0.952 3.048 23 H -0.256 1.256 24 H -0.268 1.268 25 H -0.252 1.252 26 C 0.085 3.915 27 H 0.054 0.946 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.156 0.844 31 H 0.164 0.836 32 H 0.157 0.843 33 H 0.158 0.842 34 H 0.108 0.892 35 H 0.037 0.963 36 H 0.067 0.933 37 H 0.095 0.905 38 H 0.060 0.940 39 H 0.056 0.944 40 H 0.004 0.996 41 H 0.010 0.990 42 H 0.274 0.726 43 H 0.057 0.943 44 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.686 6.769 10.917 26.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.021 3.979 3 H 0.082 0.918 4 C -0.025 4.025 5 C -0.196 4.196 6 C -0.104 4.104 7 C -0.197 4.197 8 C -0.083 4.083 9 N -0.196 5.196 10 N -0.247 5.247 11 C -0.078 4.078 12 C -0.142 4.142 13 C -0.178 4.178 14 C 0.028 3.972 15 H 0.068 0.932 16 O -0.324 6.324 17 C 0.111 3.889 18 C -0.585 4.585 19 H 0.048 0.952 20 C -0.180 4.180 21 N -0.578 5.578 22 Si 0.773 3.227 23 H -0.180 1.180 24 H -0.193 1.193 25 H -0.176 1.176 26 C -0.044 4.044 27 H 0.073 0.927 28 H 0.097 0.903 29 H 0.101 0.899 30 H 0.174 0.826 31 H 0.182 0.818 32 H 0.175 0.825 33 H 0.175 0.825 34 H 0.126 0.874 35 H 0.055 0.945 36 H 0.086 0.914 37 H 0.114 0.886 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.021 0.979 41 H 0.027 0.973 42 H 0.084 0.916 43 H 0.076 0.924 44 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -23.666 5.914 10.164 26.426 hybrid contribution 1.057 0.264 0.436 1.173 sum -22.609 6.178 10.600 25.724 Atomic orbital electron populations 1.21851 0.90761 1.02759 1.03644 1.20628 0.97291 0.94039 0.85946 0.91801 1.21404 0.95679 0.90306 0.95145 1.22195 1.01682 1.02428 0.93265 1.21941 0.94505 0.94364 0.99545 1.22461 1.01362 0.96349 0.99572 1.23144 0.95263 1.00975 0.88932 1.67533 1.10655 1.09559 1.31815 1.61670 1.05180 1.55415 1.02396 1.22353 1.01152 0.95775 0.88522 1.21520 0.92801 1.01434 0.98447 1.22076 0.97609 1.01195 0.96876 1.22074 0.80707 0.98945 0.95498 0.93181 1.87835 1.19681 1.40627 1.84213 1.20276 0.92291 0.83824 0.92463 1.21129 0.90664 1.03446 1.43236 0.95166 1.25785 0.95204 1.02199 0.94862 1.70024 1.05697 1.34977 1.47145 0.85658 0.79298 0.77816 0.79935 1.18002 1.19299 1.17553 1.21665 0.88340 0.97102 0.97255 0.92734 0.90312 0.89855 0.82609 0.81818 0.82506 0.82463 0.87414 0.94452 0.91379 0.88646 0.92118 0.92527 0.97853 0.97253 0.91646 0.92445 0.95678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.09 8.78 71.98 0.63 -1.45 16 2 C 0.13 2.84 2.33 44.17 0.10 2.94 16 3 H 0.06 1.27 8.10 -2.39 -0.02 1.25 16 4 C 0.11 2.79 4.82 42.55 0.21 3.00 16 5 C -0.18 -3.35 9.76 22.36 0.22 -3.13 16 6 C -0.08 -1.32 10.18 22.47 0.23 -1.09 16 7 C -0.18 -3.39 10.11 22.36 0.23 -3.17 16 8 C 0.07 1.85 11.18 84.67 0.95 2.80 16 9 N -0.49 -14.34 8.61 -183.88 -1.58 -15.92 16 10 N -0.52 -14.07 4.18 -875.50 -3.66 -17.73 16 11 C 0.05 1.05 5.11 86.33 0.44 1.49 16 12 C -0.10 -2.47 6.09 30.65 0.19 -2.28 16 13 C -0.14 -4.57 5.62 30.68 0.17 -4.40 16 14 C 0.09 3.42 2.77 30.65 0.08 3.51 16 15 H 0.05 2.08 7.79 -2.39 -0.02 2.06 16 16 O -0.40 -20.74 9.98 -148.98 -1.49 -22.22 16 17 C 0.19 10.15 4.57 71.23 0.33 10.48 16 18 C -0.55 -34.90 9.99 25.60 0.26 -34.64 16 19 H 0.03 2.15 8.06 -2.91 -0.02 2.13 16 20 C 0.02 1.09 5.47 84.65 0.46 1.56 16 21 N -0.94 -60.39 13.96 21.45 0.30 -60.09 16 22 Si 0.95 45.08 27.47 68.60 1.88 46.97 16 23 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 24 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 25 H -0.25 -11.33 6.54 99.48 0.65 -10.68 16 26 C 0.08 2.97 4.79 86.33 0.41 3.38 16 27 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 29 H 0.08 1.01 6.20 -2.39 -0.01 0.99 16 30 H 0.16 2.03 8.06 -2.91 -0.02 2.01 16 31 H 0.16 1.63 8.06 -2.91 -0.02 1.61 16 32 H 0.16 2.07 8.06 -2.91 -0.02 2.05 16 33 H 0.16 3.52 8.06 -2.91 -0.02 3.50 16 34 H 0.11 1.73 5.88 -2.39 -0.01 1.71 16 35 H 0.04 0.78 8.14 -2.38 -0.02 0.76 16 36 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.06 2.01 8.14 -2.38 -0.02 1.99 16 39 H 0.06 1.93 7.94 -2.39 -0.02 1.91 16 40 H 0.00 0.20 7.14 -2.38 -0.02 0.19 16 41 H 0.01 0.50 7.37 -2.39 -0.02 0.48 16 42 H 0.27 16.11 8.31 -92.70 -0.77 15.33 16 43 H 0.06 2.26 6.21 -2.39 -0.01 2.25 16 44 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -77.54 348.74 1.27 -76.27 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: 0.91 Total: 13.74 kcal Atomic # 6 Polarization: -25.92 SS G_CDS: 4.90 Total: -21.01 kcal Atomic # 7 Polarization: -88.80 SS G_CDS: -4.94 Total: -93.74 kcal Atomic # 8 Polarization: -20.74 SS G_CDS: -1.49 Total: -22.22 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 1.88 Total: 46.97 kcal Total: -77.54 1.27 -76.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205620711.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.844 kcal (2) G-P(sol) polarization free energy of solvation -77.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.88 seconds